ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009263.1| Triticum aestivum clone wlk4.pk0023.a11:fis, full... 60 1e-06
2gb|AY107381.1| Zea mays PCO061330 mRNA sequence 46 0.021
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.32
4dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.32
5dbj|AK108178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.32
6ref|XM_522326.1| PREDICTED: Pan troglodytes dual-specificity tyr... 40 1.3
7ref|NM_003845.1| Homo sapiens dual-specificity tyrosine-(Y)-phos... 40 1.3
8emb|Y09305.1|HSDYRK4 H.sapiens mRNA for protein kinase, Dyrk4, p... 40 1.3
9gb|BC031244.1| Homo sapiens dual-specificity tyrosine-(Y)-phosph... 40 1.3
10emb|CR615549.1| full-length cDNA clone CS0DL011YI01 of B cells (... 40 1.3
11gb|AC005832.1| Homo sapiens 12 BAC RPCI11-500M8 (Roswell Park Ca... 40 1.3
12gb|AF263541.1|AF263541 Homo sapiens protein kinase DYRK4 (DYRK4)... 40 1.3
13gb|AY888062.1| Synthetic construct Homo sapiens clone FLH159373.... 40 1.3
14gb|AY039003.1| Hordeum vulgare subsp. vulgare Mg-chelatase subun... 38 5.0
15ref|XM_516098.1| PREDICTED: Pan troglodytes similar to Wnt-10a p... 38 5.0
16gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 38 5.0
17gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 38 5.0
18gb|BC052234.1| Homo sapiens wingless-type MMTV integration site ... 38 5.0
19gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 38 5.0
20ref|NM_025216.2| Homo sapiens wingless-type MMTV integration sit... 38 5.0
21emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 38 5.0
22gb|BC040026.1| Homo sapiens wingless-type MMTV integration site ... 38 5.0
23gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 5.0
24emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 38 5.0
25emb|AL935257.1| Lactobacillus plantarum strain WCFS1 complete ge... 38 5.0
26dbj|AK024363.1| Homo sapiens cDNA FLJ14301 fis, clone PLACE10118... 38 5.0
27gb|AE012259.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 5.0
28gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequ... 38 5.0
29dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, co... 38 5.0
30gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 5.0
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
32gb|AC073128.5| Homo sapiens BAC clone RP11-647O5 from 2, complet... 38 5.0
33gb|AE009674.1| Brucella melitensis 16M chromosome II, section 36... 38 5.0
34gb|AF315943.1|AF315943 Homo sapiens WNT6 (WNT6) gene, partial cd... 38 5.0
35gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 38 5.0
36dbj|AK105756.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.0
37dbj|AK067836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.0
38gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 5.0
39emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 38 5.0
40dbj|AB039932.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, VA... 38 5.0 
>gb|BT009263.1| Triticum aestivum clone wlk4.pk0023.a11:fis, full insert mRNA
           sequence
          Length = 766

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 70  ccgccgtgatgcagcgcaggctcccggcgctcctgcgccgcg 111
           |||||| |||||||||| |||||||||||||||| |||||||
Sbjct: 47  ccgccgagatgcagcgccggctcccggcgctcctccgccgcg 88
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>gb|AY107381.1| Zea mays PCO061330 mRNA sequence
          Length = 1531

 Score = 46.1 bits (23), Expect = 0.021
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 77  gatgcagcgcaggctcccggcgctcctgcgccgcg 111
           |||||||||  |||||||||||||||| |||||||
Sbjct: 94  gatgcagcggtggctcccggcgctcctccgccgcg 128
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 91       tcccggcgctcctgcgccgcg 111
                |||||||||||||||||||||
Sbjct: 27770135 tcccggcgctcctgcgccgcg 27770115
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>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0663F07
          Length = 159046

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    tcccggcgctcctgcgccgcg 111
             |||||||||||||||||||||
Sbjct: 55468 tcccggcgctcctgcgccgcg 55448
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>dbj|AK108178.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-A08, full
           insert sequence
          Length = 968

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  tcccggcgctcctgcgccgcg 111
           |||||||||||||||||||||
Sbjct: 177 tcccggcgctcctgcgccgcg 157
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>ref|XM_522326.1| PREDICTED: Pan troglodytes dual-specificity
            tyrosine-(Y)-phosphorylation regulated kinase 4
            (LOC466926), mRNA
          Length = 2526

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 70   ccgccgtgatgcagcgcaggctcc 93
            ||||||||||||||| ||||||||
Sbjct: 1705 ccgccgtgatgcagcccaggctcc 1682
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>ref|NM_003845.1| Homo sapiens dual-specificity tyrosine-(Y)-phosphorylation regulated
            kinase 4 (DYRK4), mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 70   ccgccgtgatgcagcgcaggctcc 93
            ||||||||||||||| ||||||||
Sbjct: 1046 ccgccgtgatgcagcccaggctcc 1023
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>emb|Y09305.1|HSDYRK4 H.sapiens mRNA for protein kinase, Dyrk4, partial
          Length = 850

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 70 ccgccgtgatgcagcgcaggctcc 93
          ||||||||||||||| ||||||||
Sbjct: 50 ccgccgtgatgcagcccaggctcc 27
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>gb|BC031244.1| Homo sapiens dual-specificity tyrosine-(Y)-phosphorylation regulated
            kinase 4, mRNA (cDNA clone MGC:39640 IMAGE:5266287),
            complete cds
          Length = 1860

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 70   ccgccgtgatgcagcgcaggctcc 93
            ||||||||||||||| ||||||||
Sbjct: 1046 ccgccgtgatgcagcccaggctcc 1023
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>emb|CR615549.1| full-length cDNA clone CS0DL011YI01 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 947

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 70  ccgccgtgatgcagcgcaggctcc 93
           ||||||||||||||| ||||||||
Sbjct: 156 ccgccgtgatgcagcccaggctcc 133
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>gb|AC005832.1| Homo sapiens 12 BAC RPCI11-500M8 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 188948

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    ccgccgtgatgcagcgcaggctcc 93
             ||||||||||||||| ||||||||
Sbjct: 90088 ccgccgtgatgcagcccaggctcc 90111
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>gb|AF263541.1|AF263541 Homo sapiens protein kinase DYRK4 (DYRK4) mRNA, partial cds
          Length = 1746

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 70  ccgccgtgatgcagcgcaggctcc 93
           ||||||||||||||| ||||||||
Sbjct: 952 ccgccgtgatgcagcccaggctcc 929
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>gb|AY888062.1| Synthetic construct Homo sapiens clone FLH159373.01L
           dual-specificity tyrosine-phosophorylation regulated
           kinase 4 (DYRK4) mRNA, partial cds
          Length = 1563

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 70  ccgccgtgatgcagcgcaggctcc 93
           ||||||||||||||| ||||||||
Sbjct: 886 ccgccgtgatgcagcccaggctcc 863
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>gb|AY039003.1| Hordeum vulgare subsp. vulgare Mg-chelatase subunit XANTHA-F
            (Xantha-f) gene, complete cds
          Length = 6252

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 66   accgccgccgtgatgcagc 84
            |||||||||||||||||||
Sbjct: 1144 accgccgccgtgatgcagc 1162
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>ref|XM_516098.1| PREDICTED: Pan troglodytes similar to Wnt-10a protein precursor
            (LOC459952), mRNA
          Length = 3822

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 82   agcgcaggctcccggcgct 100
            |||||||||||||||||||
Sbjct: 1875 agcgcaggctcccggcgct 1893
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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     ccgccgccgtgatgcagcg 85
              |||||||||||||||||||
Sbjct: 920305 ccgccgccgtgatgcagcg 920287
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     ccgccgccgtgatgcagcg 85
              |||||||||||||||||||
Sbjct: 674890 ccgccgccgtgatgcagcg 674872
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>gb|BC052234.1| Homo sapiens wingless-type MMTV integration site family, member
           10A, mRNA (cDNA clone MGC:59695 IMAGE:5442628), complete
           cds
          Length = 2405

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  agcgcaggctcccggcgct 100
           |||||||||||||||||||
Sbjct: 90  agcgcaggctcccggcgct 108
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 67      ccgccgccgtgatgcagcg 85
               |||||||||||||||||||
Sbjct: 3100168 ccgccgccgtgatgcagcg 3100186
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>ref|NM_025216.2| Homo sapiens wingless-type MMTV integration site family, member 10A
           (WNT10A), mRNA
          Length = 2375

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  agcgcaggctcccggcgct 100
           |||||||||||||||||||
Sbjct: 79  agcgcaggctcccggcgct 97
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 67      ccgccgccgtgatgcagcg 85
               |||||||||||||||||||
Sbjct: 1889977 ccgccgccgtgatgcagcg 1889995
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>gb|BC040026.1| Homo sapiens wingless-type MMTV integration site family, member
           10A, mRNA (cDNA clone IMAGE:5189795)
          Length = 1562

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  agcgcaggctcccggcgct 100
           |||||||||||||||||||
Sbjct: 49  agcgcaggctcccggcgct 67
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 67      ccgccgccgtgatgcagcg 85
               |||||||||||||||||||
Sbjct: 1668725 ccgccgccgtgatgcagcg 1668707
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 67      ccgccgccgtgatgcagcg 85
               |||||||||||||||||||
Sbjct: 2830246 ccgccgccgtgatgcagcg 2830264
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>emb|AL935257.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 6/11
          Length = 302050

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    ccgccgtgatgcagcgcag 88
             |||||||||||||||||||
Sbjct: 18898 ccgccgtgatgcagcgcag 18880
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>dbj|AK024363.1| Homo sapiens cDNA FLJ14301 fis, clone PLACE1011896, highly similar
           to Mus musculus Wnt10a mRNA
          Length = 2375

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  agcgcaggctcccggcgct 100
           |||||||||||||||||||
Sbjct: 79  agcgcaggctcccggcgct 97
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>gb|AE012259.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 167
            of 460 of the complete genome
          Length = 9926

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 67   ccgccgccgtgatgcagcg 85
            |||||||||||||||||||
Sbjct: 1249 ccgccgccgtgatgcagcg 1267
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>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence
          Length = 505334

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    ccgccgccgtgatgcagcg 85
             |||||||||||||||||||
Sbjct: 81832 ccgccgccgtgatgcagcg 81850
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>dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence
          Length = 217594

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    ccgccgccgtgatgcagcg 85
             |||||||||||||||||||
Sbjct: 49237 ccgccgccgtgatgcagcg 49219
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 67      ccgccgccgtgatgcagcg 85
               |||||||||||||||||||
Sbjct: 3197634 ccgccgccgtgatgcagcg 3197616
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 93       ccggcgctcctgcgccgcg 111
                |||||||||||||||||||
Sbjct: 18547056 ccggcgctcctgcgccgcg 18547074
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>gb|AC073128.5| Homo sapiens BAC clone RP11-647O5 from 2, complete sequence
          Length = 55590

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    agcgcaggctcccggcgct 100
             |||||||||||||||||||
Sbjct: 13839 agcgcaggctcccggcgct 13857
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>gb|AE009674.1| Brucella melitensis 16M chromosome II, section 36 of 107 of the
           complete sequence
          Length = 12968

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  ccgccgccgtgatgcagcg 85
           |||||||||||||||||||
Sbjct: 904 ccgccgccgtgatgcagcg 922
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>gb|AF315943.1|AF315943 Homo sapiens WNT6 (WNT6) gene, partial cds; and WNT10A (WNT10A) gene,
             complete cds, complete sequence
          Length = 36654

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    agcgcaggctcccggcgct 100
             |||||||||||||||||||
Sbjct: 14280 agcgcaggctcccggcgct 14298
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>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     ccgccgccgtgatgcagcg 85
              |||||||||||||||||||
Sbjct: 296936 ccgccgccgtgatgcagcg 296954
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>dbj|AK105756.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D02, full
           insert sequence
          Length = 1959

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 93  ccggcgctcctgcgccgcg 111
           |||||||||||||||||||
Sbjct: 191 ccggcgctcctgcgccgcg 209
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>dbj|AK067836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123J03, full
           insert sequence
          Length = 1969

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 93  ccggcgctcctgcgccgcg 111
           |||||||||||||||||||
Sbjct: 189 ccggcgctcctgcgccgcg 207
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 67      ccgccgccgtgatgcagcg 85
               |||||||||||||||||||
Sbjct: 2047305 ccgccgccgtgatgcagcg 2047287
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>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     ccgccgccgtgatgcagcg 85
              |||||||||||||||||||
Sbjct: 297005 ccgccgccgtgatgcagcg 297023
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>dbj|AB039932.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, VAR region, complete
            cds
          Length = 73934

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 67   ccgccgccgtgatgcagcg 85
            |||||||||||||||||||
Sbjct: 9669 ccgccgccgtgatgcagcg 9651


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 225,315
Number of Sequences: 3902068
Number of extensions: 225315
Number of successful extensions: 17050
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16656
Number of HSP's gapped (non-prelim): 394
length of query: 111
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 90
effective length of database: 17,151,101,840
effective search space: 1543599165600
effective search space used: 1543599165600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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