>LRP1_HHV1F (P17588) Latency-related protein 1|
          Length = 340

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 5   PHCHCPNINPSRLIPNPNHSPSPPMRRAAEPYEH*SH 115
           PH H P + P    P+  HS +PP+ RA  P    SH
Sbjct: 32  PHSHAPPL-PRTPTPSHPHSRAPPLPRAPTPTHPHSH 67

>AL_DROME (Q06453) Homeobox protein aristaless|
          Length = 408

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 29  NPSRLIPNPNHSPSPPMRRAAEPYE 103
           +P R +P P+H   PP  RAA P E
Sbjct: 349 SPQRQLPPPSHQAPPPPPRAATPPE 373

>CRIM1_BRARE (Q7T3Q2) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)|
          Length = 1027

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 6   PTATARTLIPLVSSPTPITLPPLQCGELPNLTSIE 110
           P        P+   PT IT+ P  CG L N T +E
Sbjct: 439 PVTVPGECCPVCEEPTYITMAPPACGSLDNCTLLE 473

>CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)|
           (Cysteine-rich repeat-containing protein S52)
          Length = 1036

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 33  PLVSSPTPITLPPLQCGELPNLT 101
           P+   PT IT+ P  CGEL N T
Sbjct: 454 PVCEEPTIITVDPPACGELSNCT 476

>PTC1_MOUSE (Q61115) Protein patched homolog 1 (PTC1) (PTC)|
          Length = 1434

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 17   CPNINPSR---LIPNPNHSPSPPMRRAAEPYEH*SHGS 121
            CP ++P+     +P P+  P P + R A P  H ++GS
Sbjct: 1167 CPEVSPANGLNRLPTPSPEPPPSVVRFAVPPGHTNNGS 1204

>GROU_DROME (P16371) Protein groucho (Enhancer of split m9/10 protein)|
           (E(spl)m9/10)
          Length = 719

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 20  PNINPSRLIPN---PNHSPSPPMRRAAEPYE 103
           P +NP +++P    P   P  P +R A+PY+
Sbjct: 325 PGVNPKQMMPQGPPPAGYPGAPYQRPADPYQ 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,449,581
Number of Sequences: 219361
Number of extensions: 209222
Number of successful extensions: 1320
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)