ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast75f11 |
|---|---|
| Clone Library Name | barley_pub |
>SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2| Length = 2061 Score = 36.6 bits (83), Expect = 0.031 Identities = 18/32 (56%), Positives = 20/32 (62%) Frame = +1 Query: 184 AMARPHRRPRQPQEAPPNPRRLPLHVHHHQSD 279 A A PH P P+E PP P R P H+HHH SD Sbjct: 1933 AHAHPHPHPH-PREPPPPPIRQP-HLHHHSSD 1962
>SIF1_DROME (P91621) Protein still life, isoform SIF type 1| Length = 2072 Score = 36.6 bits (83), Expect = 0.031 Identities = 18/32 (56%), Positives = 20/32 (62%) Frame = +1 Query: 184 AMARPHRRPRQPQEAPPNPRRLPLHVHHHQSD 279 A A PH P P+E PP P R P H+HHH SD Sbjct: 1944 AHAHPHPHPH-PREPPPPPIRQP-HLHHHSSD 1973
>PIAS2_MOUSE (Q8C5D8) Protein inhibitor of activated STAT2 (Protein inhibitor of| activated STAT x) (Msx-interacting zinc finger protein) (DAB2-interacting protein) (DIP) (Androgen receptor-interacting protein 3) (ARIP3) Length = 621 Score = 33.1 bits (74), Expect = 0.34 Identities = 25/96 (26%), Positives = 45/96 (46%) Frame = +2 Query: 50 LASPFRSMEKRAMVGAAGLFPDDIILEILSRLPVRSLHRFKCVSVPWRDLIADPANRKKL 229 + S FR E + ++G AG ++L +R+LH K P + R++ Sbjct: 10 MVSSFRVSELQVLLGFAGRNKSGRKHDLL----MRALHLLKSGCSPAVQIKIRELYRRRY 65 Query: 230 PQTLAGFLYMSIITNRIHHHFARVHGAAAPFDPSLP 337 P+TL G +S I + + + G+++P +P LP Sbjct: 66 PRTLEGLCDLSTIKSSVF----SLDGSSSPVEPDLP 97
>FXL12_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and leucine-rich repeat| protein 12) (F-box protein FBL12) Length = 326 Score = 31.6 bits (70), Expect = 0.99 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +2 Query: 110 PDDIILEILSRLPVRSLHRFKCVSVPWRDLIAD 208 PD ++LEI S LPVR R V W+ L+ D Sbjct: 8 PDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDD 40
>BAB1_DROME (Q9W0K7) Protein bric-a-brac 1| Length = 977 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = +1 Query: 178 LRAMARPHRRPRQPQEAPPN---PRRLPLHVHHHQS 276 L +RPH + Q Q+A P LPLH HHH S Sbjct: 373 LSRSSRPHSQSPQQQQAQQQGQLPLPLPLHPHHHAS 408
>PIAS2_RAT (Q6AZ28) Protein inhibitor of activated STAT2 (Protein inhibitor of| activated STAT x) (Msx-interacting-zinc finger protein) (DAB2-interacting protein) (DIP) (Androgen receptor-interacting protein 3) (ARIP3) Length = 572 Score = 30.8 bits (68), Expect = 1.7 Identities = 24/95 (25%), Positives = 44/95 (46%) Frame = +2 Query: 50 LASPFRSMEKRAMVGAAGLFPDDIILEILSRLPVRSLHRFKCVSVPWRDLIADPANRKKL 229 + S FR E + ++G AG ++L +R+LH K P + R++ Sbjct: 10 MVSSFRVSELQVLLGFAGRNKSGRKHDLL----MRALHLLKSGCTPAVQIKIRELYRRRY 65 Query: 230 PQTLAGFLYMSIITNRIHHHFARVHGAAAPFDPSL 334 P+TL G +S I + + + G+++P +P L Sbjct: 66 PRTLEGLSDLSTIKSSVF----SLDGSSSPVEPDL 96
>MMTA2_HUMAN (Q9BU76) Multiple myeloma tumor-associated protein 2 (hMMTAG2)| Length = 263 Score = 30.8 bits (68), Expect = 1.7 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +1 Query: 193 RPHRRPRQPQEAPPNPRRLPLHVHHHQSD 279 + HRRP + +P +P R P H HHH SD Sbjct: 206 KEHRRPAEATSSPTSPER-PRH-HHHDSD 232
>GID2_ORYSA (Q7XAK4) F-box protein GID2 (Gibberellin-insensitive dwarf protein| 2) (Protein GIBBERELLIN INSENSITIVE DWARF2) Length = 212 Score = 30.4 bits (67), Expect = 2.2 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 113 DDIILEILSRLPVRSLHRFKCVSVPWRDLIAD 208 +D++ E+L R R+L CVS WR L D Sbjct: 78 EDLVFEVLRRAEARTLAAAACVSRGWRQLAED 109
>HEX3_YEAST (P32828) Hexose metabolism-related protein HEX3| Length = 619 Score = 30.0 bits (66), Expect = 2.9 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 8/58 (13%) Frame = +2 Query: 296 RVHGAAAPFDPSLPYLHPNKDE--------RIIQVDACNGLLLYRGSNKSWDDFRFIV 445 R G P DPS Y+ +++ R IQVD NG L G+N DD IV Sbjct: 101 RFFGDDGPIDPSAHYVDLDQEPGSETLETPRTIQVDNTNGYLNDNGNNNESDDGLTIV 158
>FXL12_MOUSE (Q9EPX5) F-box/LRR-repeat protein 12 (F-box and leucine-rich repeat| protein 12) (F-box protein FBL12) Length = 326 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +2 Query: 110 PDDIILEILSRLPVRSLHRFKCVSVPWRDLIAD 208 PD ++LEI S LPVR R V W+ L+ D Sbjct: 8 PDLVLLEIFSYLPVRDRIRISRVCHRWKRLVDD 40
>PIAS2_HUMAN (O75928) Protein inhibitor of activated STAT2 (Protein inhibitor of| activated STAT x) (Msx-interacting zinc finger protein) (Miz1) (DAB2-interacting protein) (DIP) (Androgen receptor-interacting protein 3) (ARIP3) (PIAS-NY protein) Length = 621 Score = 29.6 bits (65), Expect = 3.8 Identities = 24/95 (25%), Positives = 43/95 (45%) Frame = +2 Query: 50 LASPFRSMEKRAMVGAAGLFPDDIILEILSRLPVRSLHRFKCVSVPWRDLIADPANRKKL 229 + S FR E + ++G AG ++L +R+LH K P + R++ Sbjct: 10 MVSSFRVSELQVLLGFAGRNKSGRKHDLL----MRALHLLKSGCSPAVQIKIRELYRRRY 65 Query: 230 PQTLAGFLYMSIITNRIHHHFARVHGAAAPFDPSL 334 P+TL G +S I + + + G ++P +P L Sbjct: 66 PRTLEGLSDLSTIKSSVF----SLDGGSSPVEPDL 96
>POF11_SCHPO (Q09855) F-box/WD-repeat protein pof11| Length = 506 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/55 (27%), Positives = 28/55 (50%) Frame = +2 Query: 104 LFPDDIILEILSRLPVRSLHRFKCVSVPWRDLIADPANRKKLPQTLAGFLYMSII 268 +FP+++ L + S L L + K +S W+ L+ DP K L F+ +++ Sbjct: 75 VFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKALYMQKGWFVNENVL 129
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = +1 Query: 178 LRAMARPHRRPRQPQEAPPNPRRLPLHVHHH 270 L A RRPR P P+ RR H HHH Sbjct: 490 LSAPPAQRRRPRSPPPRAPSRRRHHHHNHHH 520
>CHEB3_PSESM (Q886S8) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 336 Score = 29.3 bits (64), Expect = 4.9 Identities = 21/67 (31%), Positives = 31/67 (46%) Frame = -1 Query: 201 MRSRHGTETHLKRWRDLTGRRERISRMMSSGNRPAAPTIALFSIDRKGEASQILVEGGAS 22 M R G E + R RR+R+ + SS PAA I L + A+ +LV+ Sbjct: 130 MGQRVGRERVVTTSRSEVSRRDRLVAIGSSAGGPAALEILLKGLPENFPAAIVLVQHVDQ 189 Query: 21 TASAGMS 1 +AGM+ Sbjct: 190 VFAAGMA 196
>FBX11_RAT (Q7TSL3) F-box only protein 11| Length = 843 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 110 PDDIILEILSRLPVRSLHRFKCVSVPWRDLIADPANRKKL 229 PD+++L+I S L + L R CV + +L DP K+L Sbjct: 76 PDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRL 115
>FBX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated protein VIT-1)| Length = 843 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 110 PDDIILEILSRLPVRSLHRFKCVSVPWRDLIADPANRKKL 229 PD+++L+I S L + L R CV + +L DP K+L Sbjct: 76 PDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRL 115
>KIT_CANFA (O97799) Mast/stem cell growth factor receptor precursor (EC| 2.7.10.1) (SCFR) (Proto-oncogene tyrosine-protein kinase Kit) (c-kit) Length = 975 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +2 Query: 308 AAAPFDPSLPYLHPNKDERIIQV 376 + +P +PSLP +HP K E I+ V Sbjct: 30 SVSPGEPSLPSIHPAKSELIVSV 52
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = +2 Query: 20 VEAPPSTKI*LASPFRSMEKRAMVGAAGL--FPDDIILEILSRLPVRSLHRFKCVSVPWR 193 V +PP T+ L P + R A + PD +++I S LP L R V W Sbjct: 88 VHSPPPTR--LTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWY 145 Query: 194 DLIADP 211 +L DP Sbjct: 146 NLAWDP 151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,406,248 Number of Sequences: 219361 Number of extensions: 855759 Number of successful extensions: 3710 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3700 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
