ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast75f08 |
|---|---|
| Clone Library Name | barley_pub |
>RPB2_LYCES (Q42877) DNA-directed RNA polymerase II 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1191 Score = 168 bits (425), Expect = 8e-42 Identities = 79/157 (50%), Positives = 102/157 (64%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG VG +QE+ P+T +GI PDI++NPHA P+R T GQ Sbjct: 944 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1003 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 ATPFT TV+ IS+ LHK G+ G E++ NG TG+R+ ++IF GP +YQRL HM +DK+ Sbjct: 1004 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKI 1063 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GPV LTRQP R R GG++FGEMERDC++A Sbjct: 1064 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1100
>RPB2_ARATH (P38420) DNA-directed RNA polymerase II 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1188 Score = 164 bits (414), Expect = 1e-40 Identities = 77/157 (49%), Positives = 100/157 (63%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG VG +QE+ P+T +G+ PDI++NPHA P+R T GQ Sbjct: 945 HGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1004 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 ATPFT TV+ IS+ LHK G+ G E + NG TG+ + ++IF GP +YQRL HM +DK+ Sbjct: 1005 ATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKI 1064 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GPV LTRQP R R GG++FGEMERDC++A Sbjct: 1065 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1101
>RPB2_YEAST (P08518) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (B150) (RNA polymerase II subunit 2) Length = 1224 Score = 156 bits (394), Expect = 3e-38 Identities = 75/157 (47%), Positives = 98/157 (62%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG +G +E+ PFT +GIVPD++INPHA P+R T Sbjct: 984 HGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGD 1043 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 A+PFT TVE IS+ L + G+ G E + NG TGK++ + IF GP +YQRL HM +DK+ Sbjct: 1044 ASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKI 1103 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GP+ LTRQPV R R GG++FGEMERDC++A Sbjct: 1104 HARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA 1140
>RPB2_CANGA (Q6FLD5) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1223 Score = 156 bits (394), Expect = 3e-38 Identities = 75/157 (47%), Positives = 98/157 (62%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG +G +E+ PFT +GIVPD++INPHA P+R T Sbjct: 983 HGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGD 1042 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 A+PFT TVE IS+ L + G+ G E + NG TGK++ + IF GP +YQRL HM +DK+ Sbjct: 1043 ASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKI 1102 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GP+ LTRQPV R R GG++FGEMERDC++A Sbjct: 1103 HARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA 1139
>RPB2_ENCCU (Q8SR75) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1141 Score = 155 bits (393), Expect = 4e-38 Identities = 74/157 (47%), Positives = 100/157 (63%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 H QKG +G QE+ PFT +GIVPDI+INPHA P+R T G Sbjct: 908 HAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGD 967 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 ATPF+ TV+ IS +L GF + G+E + NG TG+++++ +F GP +YQRL HM +DK+ Sbjct: 968 ATPFSGVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKI 1027 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GP+ LTRQPV R R GG++FGEMERDC+++ Sbjct: 1028 HARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIIS 1064
>RPOB1_METTH (O27124) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 603 Score = 155 bits (391), Expect = 7e-38 Identities = 79/157 (50%), Positives = 98/157 (62%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGVVG + SQE+ PFT GIVPD+++NPHA P+R + GQ Sbjct: 367 HGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVD 426 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 TPFT + I E L GF GVES+ NG TG+R+++ IF G +YQ+L HM DKV Sbjct: 427 GTPFTGEDEDDIKEALRANGFETAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKV 486 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R+ GPV LTRQP R R GG++FGEMERDCL+A Sbjct: 487 YARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIA 523
>RPB2_ASHGO (Q753Q4) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1222 Score = 154 bits (390), Expect = 9e-38 Identities = 73/157 (46%), Positives = 98/157 (62%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG +G +E+ PFT +G+VPD++INPHA P+R T Sbjct: 982 HGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGD 1041 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 A+PFT TV+ IS+ L + G+ G E + NG TGK++ + IF GP +YQRL HM +DK+ Sbjct: 1042 ASPFTDITVDGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKI 1101 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GP+ LTRQPV R R GG++FGEMERDC++A Sbjct: 1102 HARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA 1138
>RPB2_SCHPO (Q02061) DNA-directed RNA polymerase II 138 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1210 Score = 152 bits (385), Expect = 3e-37 Identities = 73/157 (46%), Positives = 95/157 (60%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG +G E+ PF+ QGIVPDI+INPHA P+R T Sbjct: 973 HGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGD 1032 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 ATPFT TVE +S+ L GF G E + +G TG+++ + +F GP +YQRL H+ +DK+ Sbjct: 1033 ATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKI 1092 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GPV LTRQPV R R GG++FGEMERDC ++ Sbjct: 1093 HARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQIS 1129
>RPOB1_METTW (P09845) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 604 Score = 150 bits (379), Expect = 2e-36 Identities = 74/157 (47%), Positives = 98/157 (62%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGVVG + SQE+ PFT G+VPD+++NPHA P+R + GQ Sbjct: 368 HGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVD 427 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 TPFT + + E L GF GVE++ NG TG+R+++ IF G +YQ+L HM D++ Sbjct: 428 GTPFTGEEEKDLKEALKANGFESAGVETLYNGITGERIEAEIFIGVAYYQKLHHMTTDRI 487 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R+ GPV LTRQP R R GG++FGEMERDCL+A Sbjct: 488 YARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIA 524
>RPB2_MOUSE (Q8CFI7) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) (RPB2) Length = 1174 Score = 145 bits (367), Expect = 4e-35 Identities = 75/158 (47%), Positives = 93/158 (58%), Gaps = 1/158 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG G QE+ PFTC+GI PDI+INPHA P+R T G Sbjct: 939 HGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGD 998 Query: 185 ATPFTTAT-VEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATPF A V+ IS L G+ G E + NG TG+++ S IF GP +YQRL HM +DK Sbjct: 999 ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1058 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 + R GP+ L RQP+ R R GG++FGEMERDC +A Sbjct: 1059 IHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
>RPB2_HUMAN (P30876) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) (RPB2) Length = 1174 Score = 145 bits (367), Expect = 4e-35 Identities = 75/158 (47%), Positives = 93/158 (58%), Gaps = 1/158 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG G QE+ PFTC+GI PDI+INPHA P+R T G Sbjct: 939 HGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGD 998 Query: 185 ATPFTTAT-VEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATPF A V+ IS L G+ G E + NG TG+++ S IF GP +YQRL HM +DK Sbjct: 999 ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1058 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 + R GP+ L RQP+ R R GG++FGEMERDC +A Sbjct: 1059 IHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
>RPB2_CAEEL (Q10578) DNA-directed RNA polymerase II second largest subunit (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1193 Score = 142 bits (359), Expect = 3e-34 Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 1/158 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG +G + QE+ PFT +G+ PDI+INPHA P+R T G Sbjct: 945 HGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGD 1004 Query: 185 ATPFT-TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATPF T V+ IS L + G+ G E + NG TGK++ + IF GP +YQRL HM +DK Sbjct: 1005 ATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDK 1064 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 + R GP+ + RQP+ R R GG++FGEMERDC ++ Sbjct: 1065 IHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQIS 1102
>RPB2_DROME (P08266) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1176 Score = 140 bits (354), Expect = 1e-33 Identities = 71/158 (44%), Positives = 93/158 (58%), Gaps = 1/158 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG G QE+ FTC+G+ PDI+INPHA P+R T G Sbjct: 941 HGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGD 1000 Query: 185 ATPFTTAT-VEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATPF A V+ IS L + G+ G E + NG TG+++ + +F GP +YQRL HM +DK Sbjct: 1001 ATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 1060 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 + R GPV L RQP+ R R GG++FGEMERDC ++ Sbjct: 1061 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIS 1098
>RPOB_SULAC (P11513) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1126 Score = 137 bits (346), Expect = 1e-32 Identities = 72/157 (45%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGVVG L Q + P+T +GIVPDI++NPHA P+R T GQ Sbjct: 880 HGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVD 939 Query: 185 ATPFT-TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATPF T ++ + +++ KLG E V +G+TG++++S I G +YQ+L HM DK Sbjct: 940 ATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADK 999 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 + R GPV LTRQP R R GG++FGEMERDCL+ Sbjct: 1000 MHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 1036
>RPC2_YEAST (P22276) DNA-directed RNA polymerase III 130 kDa polypeptide (EC| 2.7.7.6) (C128) (RNA polymerase III subunit 2) Length = 1149 Score = 137 bits (345), Expect = 1e-32 Identities = 70/157 (44%), Positives = 94/157 (59%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV G + QE+ PF QGIVPDI++NPH FP+R T G+ Y Sbjct: 916 HGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEY 975 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 T F + +E +S+ L GF+ G + + +G TG+ +Q+ IF GP +YQ+L HM DK+ Sbjct: 976 GTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKM 1035 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GP LTRQP R R GG++ GEMERDC++A Sbjct: 1036 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIA 1072
>RPOB_THECE (P31814) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1122 Score = 136 bits (343), Expect = 2e-32 Identities = 67/156 (42%), Positives = 93/156 (59%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV+G + QE+ P+T GIVPD+++NPH P+R T GQ Sbjct: 885 HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVD 944 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 T F E + ++L +LGF G E + +G TG+R+++ +F G +YQRL HM DK+ Sbjct: 945 GTAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKM 1004 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 R+ GPV LT+QP R R GG++FGEMERD L+ Sbjct: 1005 HARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLI 1040
>RPC2_SCHPO (Q10233) Putative DNA-directed RNA polymerase III 130 kDa polypeptide| (EC 2.7.7.6) (RNA polymerase III subunit 2) Length = 1165 Score = 135 bits (339), Expect = 7e-32 Identities = 69/157 (43%), Positives = 91/157 (57%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV G + QE+ PF QGI PDI++NPH FP+R T G+ Y Sbjct: 932 HGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEY 991 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 T F VE S L + G++ G + + +G TG+ +++ IF GP +YQ+L HM DK+ Sbjct: 992 GTCFGGTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKM 1051 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GP LTRQP R R GG++ GEMERDCL+A Sbjct: 1052 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIA 1088
>RPC2_DROME (P25167) DNA-directed RNA polymerase III 128 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase III subunit 2) Length = 1137 Score = 134 bits (337), Expect = 1e-31 Identities = 66/157 (42%), Positives = 92/157 (58%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV G + QE+ PF GI PD+++NPH FP+R T G+ Y Sbjct: 907 HGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHY 966 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 T F + VE I +L + GF+ G + +G TG +++ I++GP +YQ+L HM +DK+ Sbjct: 967 GTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKM 1026 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R GP LTRQP R R GG++ GEMERDCL++ Sbjct: 1027 HARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLIS 1063
>RPA2_SCHPO (Q9P7X8) Probable DNA-directed RNA polymerase I polypeptide 2 (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1227 Score = 133 bits (334), Expect = 3e-31 Identities = 69/160 (43%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG+ + PFT G+ PDI+INPHAFP+R T G + Sbjct: 959 HGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQD 1018 Query: 185 ATPFTTA----TVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 +TPF + + EQL K G++ G E + +G TG+ M++ I+ G +YQRL HM Sbjct: 1019 STPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMV 1078 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 DK + R TGP+H LTRQPV RKR GG++FGEMERD ++ Sbjct: 1079 SDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVI 1118
>RPOB1_HALSA (P15351) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 607 Score = 132 bits (331), Expect = 6e-31 Identities = 67/156 (42%), Positives = 90/156 (57%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGVVG L QE+ PFT +G+VPD+V+NPHA P+R T G Sbjct: 370 HGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGRSVD 429 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 TPFT + I L GF G E + +G +G+++++ IF G FY +L HM +K+ Sbjct: 430 GTPFTGEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEAEIFVGTIFYHKLYHMVSNKL 489 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 R+ GPV LTRQP R R GG++ GEMERD ++ Sbjct: 490 HARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVI 525
>RPOB1_METVA (P41557) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 614 Score = 131 bits (330), Expect = 8e-31 Identities = 64/157 (40%), Positives = 92/157 (58%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV+G + QE+ PFT G++PD++INPHA P+R T GQ Sbjct: 371 HGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECRRVD 430 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 T F+ + L GF+ G E++ +G+TG++++ IF G +YQ+L H+ K+ Sbjct: 431 GTIFSGEGEWALRHALENYGFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKI 490 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R+ GP+ LTRQP R R GG++FGEMERD L+A Sbjct: 491 HARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVA 527
>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 130 bits (328), Expect = 1e-30 Identities = 66/156 (42%), Positives = 91/156 (58%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV G + QE+ PF GI PDI++NPH FP+R T G+ Y Sbjct: 901 HGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHY 960 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 T F + V+ + E L + G++ G + V +G TG+ +++ I+ GP +YQ+L HM DK+ Sbjct: 961 GTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM 1020 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 R GP LTRQP R R GG++ GEMERDCL+ Sbjct: 1021 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI 1056
>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 130 bits (328), Expect = 1e-30 Identities = 66/156 (42%), Positives = 91/156 (58%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV G + QE+ PF GI PDI++NPH FP+R T G+ Y Sbjct: 901 HGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHY 960 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 T F + V+ + E L + G++ G + V +G TG+ +++ I+ GP +YQ+L HM DK+ Sbjct: 961 GTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM 1020 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 R GP LTRQP R R GG++ GEMERDCL+ Sbjct: 1021 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI 1056
>RPOB1_ARCFU (O28392) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 604 Score = 130 bits (326), Expect = 2e-30 Identities = 70/156 (44%), Positives = 88/156 (56%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGVVG L +E+ PFT GIVPD++INPHA P+R T G Sbjct: 367 HGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGHVLEMIGGKVGSLEGRRVD 426 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F + E + L K GFS G E + +G TG+R IF G +YQ+L HM K+ Sbjct: 427 GSLFHGESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVDIFVGVIYYQKLYHMVSSKI 486 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 R+ GPV LTRQP R R GG++FGEMERD L+ Sbjct: 487 HARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLI 522
>RPOB1_METJA (Q60181) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 636 Score = 128 bits (322), Expect = 7e-30 Identities = 68/156 (43%), Positives = 89/156 (57%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV+G QE+ PFT GIVPDI+INPHA P+R T GQ Sbjct: 372 HGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGALEGRRID 431 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 T F+ + + L LGF G E + +G+TGK+ + I+ G +YQ+L H+ K+ Sbjct: 432 GTIFSGEKEWDLRKALEALGFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKI 491 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 R+ GPV LTRQP R R GG++FGEMERD L+ Sbjct: 492 HARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLI 527
>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1195 Score = 128 bits (321), Expect = 9e-30 Identities = 66/157 (42%), Positives = 89/157 (56%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGVVG + QE+ PFT GI+PD++ NPH+ P+R T G Sbjct: 956 HGQKGVVGLVVPQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFID 1015 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 T F+ + + + L K GF + E + +G TG+R ++ IF G +YQ+L HM K Sbjct: 1016 GTIFSGEPEKSLRDALVKYGFRKSSTEVMYDGITGRRFKADIFVGVIYYQKLHHMVAGKF 1075 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 R+ GPV LTRQP R R GG++FGEMERD L+A Sbjct: 1076 HARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIA 1112
>RPA2_ASHGO (Q75DS1) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1198 Score = 127 bits (319), Expect = 1e-29 Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV + PF+ GI PD++INPHAFP+R T G + Sbjct: 916 HGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQD 975 Query: 185 ATPFTTAT----VEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 ATP+T + + +QL K G++ G E + +G TG+ +++ I+ G +YQRL HM Sbjct: 976 ATPWTFSEEDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMV 1035 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 DK + R+TGPV+ LT QPV RKR GG++ GEMERD L+ Sbjct: 1036 NDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALI 1075
>RPA2_YEAST (P22138) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (A135) (RNA polymerase I subunit 2) Length = 1203 Score = 125 bits (315), Expect = 4e-29 Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 4/160 (2%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV + PF+ GI PDI+INPHAFP+R T G + Sbjct: 921 HGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQD 980 Query: 185 ATPFT----TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 +TP+ + EQL K G++ G E + +G TG+ +++ I+ G +YQRL HM Sbjct: 981 STPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMV 1040 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 DK + R+TGPV+ LT QPV RKR GG++ GEMERD L+ Sbjct: 1041 NDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALI 1080
>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1234 Score = 125 bits (313), Expect = 7e-29 Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 4/161 (2%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV+ + PF+ GI PD++INPHAFP+R T G + Sbjct: 936 HGQKGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGLAQD 995 Query: 185 ATPFT----TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 +TPF + QL K G++ G E + +G TG+ Q+ I+ G +YQRL HM Sbjct: 996 STPFKFDEQNTAGDYFGHQLMKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMV 1055 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 DK + R TGPV P T QP+ RK+ GG++ GEMERD LLA Sbjct: 1056 NDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDALLA 1096
>RPA2_EUPOC (P28365) DNA-directed RNA polymerase I second largest subunit (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1166 Score = 121 bits (303), Expect = 1e-27 Identities = 68/161 (42%), Positives = 88/161 (54%), Gaps = 4/161 (2%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKGV+ L Q + PFT GI PD++INPHAFP+R T G + Sbjct: 898 HGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKT 957 Query: 185 ATPFT----TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 F V ++L GF+ G E + +G G +++ IF G +YQRL HM Sbjct: 958 VETFQRYDDNDIVGHFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMV 1017 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 DK + R TGP+ LT QPV RK+ GG++FGEMERD LLA Sbjct: 1018 SDKSQARGTGPIDILTHQPVKGRKKGGGIRFGEMERDSLLA 1058
>RPA2_PONPY (Q5REE8) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1136 Score = 121 bits (303), Expect = 1e-27 Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 4/161 (2%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG++ L E+ PFT G+VPDI+ NPH FP+R T G Sbjct: 887 HGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHD 946 Query: 185 ATPFT----TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 ATPF + +E E L G++ G E + +G +G +++ IF G +YQRL HM Sbjct: 947 ATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMV 1006 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 DK + R TG +T QP+ R GG++FGEMERD LLA Sbjct: 1007 SDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLA 1047
>RPA2_HUMAN (Q9H9Y6) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1135 Score = 121 bits (303), Expect = 1e-27 Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 4/161 (2%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG++ L E+ PFT G+VPDI+ NPH FP+R T G Sbjct: 887 HGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHD 946 Query: 185 ATPFT----TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 ATPF + +E E L G++ G E + +G +G +++ IF G +YQRL HM Sbjct: 947 ATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMV 1006 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 DK + R TG +T QP+ R GG++FGEMERD LLA Sbjct: 1007 SDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLA 1047
>RPA2_RAT (O54888) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) (RNA polymerase I 127 kDa subunit) Length = 1135 Score = 120 bits (302), Expect = 1e-27 Identities = 64/161 (39%), Positives = 87/161 (54%), Gaps = 4/161 (2%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG++ L E+ PFT G++PDI+ NPH FP+R T G Sbjct: 887 HGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHD 946 Query: 185 ATPFT----TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 ATPF + +E E L G++ G E + +G +G +++ IF G +YQRL HM Sbjct: 947 ATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMV 1006 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 DK + R TG +T QP+ R GG++FGEMERD LLA Sbjct: 1007 SDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLA 1047
>RPA2_MOUSE (P70700) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1135 Score = 120 bits (300), Expect = 2e-27 Identities = 64/161 (39%), Positives = 87/161 (54%), Gaps = 4/161 (2%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HGQKG++ L E+ PFT G++PDI+ NPH FP+R T G Sbjct: 887 HGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHD 946 Query: 185 ATPFT----TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 ATPF + +E E L G++ G E + +G +G +++ IF G +YQRL HM Sbjct: 947 ATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMV 1006 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 DK + R TG +T QP+ R GG++FGEMERD LLA Sbjct: 1007 SDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLA 1047
>RPO2_MIMIV (Q7T6X7) DNA-directed RNA polymerase subunit 2 (EC 2.7.7.6)| Length = 1196 Score = 114 bits (286), Expect = 1e-25 Identities = 62/157 (39%), Positives = 84/157 (53%), Gaps = 1/157 (0%) Frame = +2 Query: 8 GQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYA 187 GQKG +G+ + + F+ G++PDI+INP+ P R T GQ A Sbjct: 954 GQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLLGKLCAVKGVYGDA 1013 Query: 188 TPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVK 367 TPFT+ + I+++L G+ G E++ NG GK++ IF GP +YQRL M DK Sbjct: 1014 TPFTSVDLNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAH 1073 Query: 368 FRNTGPVHPLTRQPVADRKRFGGVKFG-EMERDCLLA 475 R GP LTRQ R R GG++ G EMERD L A Sbjct: 1074 SRARGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCA 1110
>RPA2_DROME (P20028) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1129 Score = 114 bits (284), Expect = 2e-25 Identities = 63/160 (39%), Positives = 83/160 (51%), Gaps = 4/160 (2%) Frame = +2 Query: 8 GQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYA 187 GQKG+ E+ PFT G++PDIV NPH FP+R T A Sbjct: 879 GQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDA 938 Query: 188 TPFT----TATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAE 355 TPF ++ + L G++ G E + +G G+ M + IF G YQRL HM Sbjct: 939 TPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVF 998 Query: 356 DKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 DK + R+TG V T QP+ RKR GGV+FGEMERD L++ Sbjct: 999 DKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALIS 1038
>RPO2_ASFB7 (P42487) DNA-directed RNA polymerase subunit 2 (EC 2.7.7.6)| Length = 1242 Score = 100 bits (249), Expect = 2e-21 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 1/157 (0%) Frame = +2 Query: 8 GQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYA 187 G KG+ + PFT G+ PD+++NPH+ P+R T GQ Sbjct: 1001 GNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDG 1060 Query: 188 TPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRL-IHMAEDKV 364 T F V+++SE+L + G G + + NGQTG+ + IF GP ++QRL + +D+ Sbjct: 1061 TAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRY 1120 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 + GP LT QP+ ++ GG++ GEME L A Sbjct: 1121 AVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTA 1157
>RPOB_CHLCH (Q3ATP5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1300 Score = 99.8 bits (247), Expect = 3e-21 Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVVG + E+ PF G DIV+NP P+R GQ ++ Sbjct: 1080 HGNKGVVGKILPVEDMPFMADGTPVDIVLNPLGVPSRMNIGQLYETSLGWAAKKLGV-KF 1138 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 TP F AT E + +L + G G S+ +G+TG+R + G + +L H+ +DK Sbjct: 1139 KTPIFNGATYEEVQRELERAGLPTHGKVSLFDGRTGERFDDEVTVGYIYMLKLSHLVDDK 1198 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1199 IHARSTGPYSLITQQPLGGKAQFGGQRFGEME 1230
>RPOB_CARHZ (Q3A9Q7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1132 Score = 94.4 bits (233), Expect = 1e-19 Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +E+ PF G +IV+NP P+R GQ Sbjct: 856 HGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIGQILECHLGWAAKALGI-NV 914 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F AT E I E L K G G V +G+TG+ S + G + +L H+ +DK Sbjct: 915 ATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTGEPFDSRVTVGYVYMLKLAHLVDDK 974 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+TGP +T+QP+ + +FGG +FGEME Sbjct: 975 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1006
>RPOB_PORGI (Q7MX27) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1269 Score = 93.2 bits (230), Expect = 3e-19 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + QE+ PF G DI +NP P+R GQ ++ Sbjct: 1053 HGNKGIVSKIVRQEDMPFLADGTPVDICLNPLGVPSRMNLGQIFEAVLAWAGRKMNV-KF 1111 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F A++ ++E K G R G + +G TG+R G ++ +L HM +DK Sbjct: 1112 ATPIFDGASLNDMNEWTDKAGLPRDGKTYLYDGGTGERFDQPATVGVTYFLKLGHMVDDK 1171 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1172 MHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1203
>RPOB_CHLTE (Q8KG15) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1303 Score = 91.7 bits (226), Expect = 9e-19 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVVG + E+ PF G DIV+NP P+R GQ ++ Sbjct: 1083 HGNKGVVGKILPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAGKKLGV-KF 1141 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 TP F+ AT + E L K G G + +G+TG++ + G + +L H+ +DK Sbjct: 1142 KTPIFSGATYTEVQEYLEKAGLPGHGKVKLFDGRTGEQFHDEVTVGYIYMLKLSHLVDDK 1201 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1202 IHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1233
>RPOB_BACFR (Q64NJ7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1270 Score = 91.3 bits (225), Expect = 1e-18 Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + QE+ PF G DIV+NP P+R GQ ++ Sbjct: 1054 HGNKGIVSRVVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIFEAVLGRAGKNLGV-KF 1112 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F AT++ ++E K G R + +G TG+R G + +L HM EDK Sbjct: 1113 ATPIFDGATLDDLNEWTDKAGLPRYCKTYLCDGGTGERFDQPATVGVTYMLKLGHMVEDK 1172 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1173 MHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1204
>RPOB_BACFN (Q5L897) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1270 Score = 91.3 bits (225), Expect = 1e-18 Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + QE+ PF G DIV+NP P+R GQ ++ Sbjct: 1054 HGNKGIVSRVVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIFEAVLGRAGKNLGV-KF 1112 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F AT++ ++E K G R + +G TG+R G + +L HM EDK Sbjct: 1113 ATPIFDGATLDDLNEWTDKAGLPRYCKTYLCDGGTGERFDQPATVGVTYMLKLGHMVEDK 1172 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1173 MHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1204
>RPOB_BACTN (Q8A469) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1270 Score = 90.9 bits (224), Expect = 2e-18 Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + QE+ PF G DIV+NP P+R GQ ++ Sbjct: 1054 HGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFEAVLGRAGKTLGV-KF 1112 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F AT++ + + K G R + +G TG++ G + +L HM EDK Sbjct: 1113 ATPIFDGATMDDLDQWTDKAGLPRYCKTYLCDGGTGEQFDQAATVGVTYMLKLGHMVEDK 1172 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1173 MHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1204
>RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1155 Score = 90.5 bits (223), Expect = 2e-18 Identities = 49/151 (32%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI +NP P+R GQ Sbjct: 919 HGNKGVVAKILPVEDMPYLADGTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYN 978 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F +AT E I E+L K GF+ E + +G TG+ ++ + G + +L H+ +DK+ Sbjct: 979 VPVFESATNEQIQEKLKKAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHLVDDKM 1038 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +++QP+ + +FGG + GEME Sbjct: 1039 HARSTGPYSLVSQQPLGGKAQFGGQRLGEME 1069
>RPOB_TREPA (O83269) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 90.1 bits (222), Expect = 3e-18 Identities = 46/151 (30%), Positives = 77/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + +E+ P+ G D+ +NP P+R GQ Sbjct: 938 HGNKGIVARILPEEDMPYLDDGTPLDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYE 997 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F + + E I E+L + GF + +G+TG Q+ +F G ++ +L H+ +DK+ Sbjct: 998 SPVFQSPSNEQIGEKLMQAGFPTNSKVMLRDGRTGDYFQNPVFVGVIYFMKLAHLVDDKM 1057 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG + GEME Sbjct: 1058 HARSTGPYSLVTQQPLGGKAQFGGQRLGEME 1088
>RPOB_STAS1 (Q49V52) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 89.7 bits (221), Expect = 3e-18 Identities = 48/151 (31%), Positives = 77/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ L +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKLVPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A+ E + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGASDEDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_BACSK (Q5WLS0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1180 Score = 89.4 bits (220), Expect = 4e-18 Identities = 48/151 (31%), Positives = 77/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ PF G DI++NP P+R GQ Sbjct: 930 HGNKGVISRILPEEDMPFLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARKLGIHVA 989 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A+ E + L + G +R G + +G+TG+ + + G + +L HM +DK+ Sbjct: 990 SPVFDGASEEDVWGTLEEAGMARDGKTILYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKL 1049 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1050 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1080
>RPOB_CLOPE (Q93R88) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1234 Score = 89.0 bits (219), Expect = 6e-18 Identities = 48/151 (31%), Positives = 75/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ PF G I +NP P+R GQ Sbjct: 942 HGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASALGWHIA 1001 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F AT I + L K G++R G + +G+TG+ + + G + +L H+ +DK+ Sbjct: 1002 TPVFDGATETDIEDCLEKAGYNRNGKTVLRDGRTGEEFDNEVTVGIMYILKLAHLVDDKI 1061 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1062 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1092
>RPOB_FUSNN (Q8RHI6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1184 Score = 88.6 bits (218), Expect = 8e-18 Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 2/153 (1%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXR- 181 HG KGVV + E+ PF G D+V+NP P+R GQ Sbjct: 921 HGNKGVVSRVLPAEDMPFLEDGTHLDVVLNPLGVPSRMNIGQVLEVHLGMAMRTLNGGTC 980 Query: 182 YATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAED 358 ATP F AT E + + L K G+ R G ++ +G+TG++ + + G + +L H+ ED Sbjct: 981 IATPVFDGATEEQVKDYLEKQGYPRTGKVTLYDGRTGEKFDNKVTVGIMYMLKLHHLVED 1040 Query: 359 KVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 K+ R GP +T+QP+ + +FGG + GEME Sbjct: 1041 KMHARAIGPYSLVTQQPLGGKAQFGGQRLGEME 1073
>RPOB_BACLD (Q65PB5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1193 Score = 88.6 bits (218), Expect = 8e-18 Identities = 48/151 (31%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARRLGLHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A E + E L + G SR + +G+TG+ + + G + +L HM +DK+ Sbjct: 989 SPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_PORCN (Q9F3X8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1270 Score = 88.6 bits (218), Expect = 8e-18 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + QE+ PF G D+ +NP P+R GQ ++ Sbjct: 1055 HGNKGIVSKIVRQEDMPFMEDGTPMDLCLNPLGVPSRMNLGQIFELSSMGSRRLDV--KF 1112 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F A+++ + + K G R G + +G TG++ G ++ +L HM +DK Sbjct: 1113 ATPIFDGASLDDLDQWTDKAGIPRYGKTYLYDGGTGEQFDQPATVGVTYFLKLGHMVDDK 1172 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1173 MHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1204
>RPOB_GEOKA (Q5L405) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1190 Score = 88.2 bits (217), Expect = 1e-17 Identities = 48/151 (31%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ PF G DI++NP P+R GQ Sbjct: 929 HGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLHIA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F AT E + L + G +R + +G+TG+ + + G + +L HM +DK+ Sbjct: 989 SPVFDGATEEDVWNILEEAGLARDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_THETN (Q8R7U6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1234 Score = 88.2 bits (217), Expect = 1e-17 Identities = 50/151 (33%), Positives = 75/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + E+ PF G I +NP P+R GQ Sbjct: 941 HGNKGVISRILPVEDMPFLPDGTPLQICLNPLGVPSRMNIGQVLETHLGLVAKALGWYIA 1000 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F AT + I E L K GFS G + +G+TG+ + + G + +L H+ +DK+ Sbjct: 1001 SPVFDGATEKDIEELLAKSGFSPDGKVQLYDGRTGEPFDNKVTVGYMYMLKLHHLVDDKM 1060 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1061 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1091
>RPOB_BACHD (Q9Z9M2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1180 Score = 88.2 bits (217), Expect = 1e-17 Identities = 47/151 (31%), Positives = 77/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 930 HGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARRLGLHVA 989 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A+ E + L + G +R G + +G+TG+ + + G + +L HM +DK+ Sbjct: 990 SPVFDGASEEDVWATLEEAGMARDGKTILYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKL 1049 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1050 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1080
>RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1155 Score = 88.2 bits (217), Expect = 1e-17 Identities = 48/151 (31%), Positives = 75/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI +NP P+R GQ Sbjct: 919 HGNKGVVAKILPVEDMPYLADGTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYN 978 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F +AT E I E+L GF+ E + +G TG+ ++ + G + +L H+ +DK+ Sbjct: 979 VPVFESATNEQIQEKLKTAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHLVDDKM 1038 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +++QP+ + +FGG + GEME Sbjct: 1039 HARSTGPYSLVSQQPLGGKAQFGGQRLGEME 1069
>RPOB_OCEIH (Q8ETY8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1179 Score = 87.4 bits (215), Expect = 2e-17 Identities = 47/151 (31%), Positives = 75/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 932 HGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAARQLGIHVA 991 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A E + E L + G R + +G+TG+ + + G + +L HM +DK+ Sbjct: 992 SPVFDGAREEDVWETLEEAGMPRDAKTVLYDGRTGEAFDNRVSVGVMYMIKLAHMVDDKL 1051 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1052 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1082
>RPOB_STAAU (P47768) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1182 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 930 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 989 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 990 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1049 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1050 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1080
>RPOB_BACSU (P37870) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1193 Score = 86.7 bits (213), Expect = 3e-17 Identities = 48/151 (31%), Positives = 75/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A E + E L + G SR + +G+TG+ + + G + +L HM +DK+ Sbjct: 989 SPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGHGFGEME 1079
>RPOB_STAHJ (Q4L3K3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_STAES (Q8CQ84) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_STAEQ (Q5HRL0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_STAAW (P60279) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_STAAS (Q6GBU5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_STAAR (Q6GJC6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_STAAN (P60278) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_STAAM (Q932F8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_STAAC (Q5HID3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/151 (30%), Positives = 76/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 929 HGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + + + + G +R G + +G+TG+ + I G + +L HM +DK+ Sbjct: 989 SPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKL 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_TREDE (Q73JJ7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1167 Score = 86.3 bits (212), Expect = 4e-17 Identities = 44/151 (29%), Positives = 77/151 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + +E+ P+ G DI +NP P+R GQ Sbjct: 925 HGNKGLVARILPEEDMPYMEDGTPLDICLNPLGVPSRMNIGQILESELGLAGLKLNEWYE 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F + ++E I +L + G+ + +G TG+ ++ +F G ++ +L H+ +DK+ Sbjct: 985 SPVFESPSMEQIEAKLKEAGYPTSSKVKLRDGLTGRLFENEVFVGVIYFLKLAHLVDDKM 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG + GEME Sbjct: 1045 HARSTGPYSLVTQQPLGGKAQFGGQRLGEME 1075
>RPOB_ENTFA (Q82Z40) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1207 Score = 86.3 bits (212), Expect = 4e-17 Identities = 48/151 (31%), Positives = 74/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +E+ PF G DI++NP P+R GQ Sbjct: 928 HGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F AT E + E + + G + + +G+TG+ + I G + +L HM +DK+ Sbjct: 988 TPVFDGATDEDVWETVREAGMASDAKTVLYDGRTGEPFDNRISVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOB_CLOTE (Q890N4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1236 Score = 86.3 bits (212), Expect = 4e-17 Identities = 48/151 (31%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ PF G I +NP P+R GQ Sbjct: 945 HGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGLAASKLGWHVA 1004 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F AT I E L K G+ G + +G+TG+ + + G + +L H+ +DK+ Sbjct: 1005 TPVFDGATEPEIVECLEKAGYEGDGKTVLYDGRTGEPFDNRVTVGYMYILKLAHLVDDKI 1064 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1065 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1095
>RPOB_LEPBI (Q9KK59) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1228 Score = 85.9 bits (211), Expect = 5e-17 Identities = 46/151 (30%), Positives = 75/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +QE+ P+ G DIV+NP P+R GQ Sbjct: 981 HGNKGVVARVMAQEDMPYMEDGSPVDIVLNPLGVPSRMNLGQIFETQLGFAAKKLGINFE 1040 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ +++ K G + +G+TG++ + +F G + +L H+ +DK+ Sbjct: 1041 TPVFDGASEGDVNDFCKKAGLPENSKFQLYDGRTGEKFINQVFCGYIYMLKLAHLVDDKI 1100 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG + GEME Sbjct: 1101 HARSTGPYSLVTQQPLGGKAQFGGQRLGEME 1131
>RPOB_LISMO (Q9RLT9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1184 Score = 85.9 bits (211), Expect = 5e-17 Identities = 46/151 (30%), Positives = 74/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ PF G DI++NP P+R GQ Sbjct: 930 HGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVA 989 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A E + + + G +R + +G++G+ + I G + +L HM +DK+ Sbjct: 990 TPVFDGANEEDVWSTVEEAGMARDAKTILYDGRSGEAFDNRISVGVMYMIKLAHMVDDKL 1049 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1050 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1080
>RPOB_LISMF (Q724F0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1184 Score = 85.9 bits (211), Expect = 5e-17 Identities = 46/151 (30%), Positives = 74/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ PF G DI++NP P+R GQ Sbjct: 930 HGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVA 989 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A E + + + G +R + +G++G+ + I G + +L HM +DK+ Sbjct: 990 TPVFDGANEEDVWSTVEEAGMARDAKTILYDGRSGEAFDNRISVGVMYMIKLAHMVDDKL 1049 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1050 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1080
>RPOB_LISIN (Q92F22) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1184 Score = 85.9 bits (211), Expect = 5e-17 Identities = 46/151 (30%), Positives = 74/151 (49%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ PF G DI++NP P+R GQ Sbjct: 930 HGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVA 989 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A E + + + G +R + +G++G+ + I G + +L HM +DK+ Sbjct: 990 TPVFDGANEEDVWSTVEEAGMARDAKTVLYDGRSGEAFDNRISVGVMYMIKLAHMVDDKL 1049 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1050 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1080
>RPOB_LACAC (Q5FM97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1213 Score = 85.1 bits (209), Expect = 8e-17 Identities = 44/151 (29%), Positives = 71/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG V + +E+ P+ G DI +NP P+R GQ Sbjct: 927 HGNKGTVAAVMPEEDMPYLPDGTPVDICLNPMGVPSRMNIGQLLELHLGAAARQLGIHVA 986 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A + + + + G + G + +G+TG+ + + G Y +L HM +DK+ Sbjct: 987 TPVFDGANENDVWDTVRQAGMDKDGKTVIYDGRTGEPFHNRVSVGVMHYLKLTHMVDDKI 1046 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1047 HARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1077
>RPOB_SYMTH (Q67JT3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1250 Score = 85.1 bits (209), Expect = 8e-17 Identities = 46/151 (30%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ PF G DI++ P P+R GQ Sbjct: 894 HGNKGVISVIVPEEDMPFMPDGTPIDIILTPLGVPSRMNIGQIMEIHLGWAAKTLGMYVA 953 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F A + I E L K G + +G+TG+ + + G + +L H+ +DK+ Sbjct: 954 SPVFDGANEQDIREMLLKAHLPPNGKTVLYDGKTGEPFDNEVTVGYKYMLKLHHLVDDKI 1013 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1014 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1044
>RPOB_LACJO (Q74L95) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1209 Score = 84.0 bits (206), Expect = 2e-16 Identities = 43/151 (28%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG + + +E+ P+ G DI +NP P+R GQ Sbjct: 926 HGNKGTIALVCPEEDMPYLPDGRPVDICLNPMGVPSRMNIGQVLELHLGIAAKQLGIHVA 985 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ + + + + G + G + +G+TG+ + + G +Y +L HM +DK+ Sbjct: 986 TPVFDGASEDDMWNMVREAGIGKDGKTVLYDGRTGEPFHNRVSVGIMYYLKLTHMVDDKI 1045 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1046 HARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1076
>RPOB_RHOBA (Q7URW6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1240 Score = 83.6 bits (205), Expect = 2e-16 Identities = 48/151 (31%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + E+ PF G I++NP P+R GQ Sbjct: 1020 HGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGWAGAKLGFQAL 1079 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ I++ L + G G + +G+TG+ M+ G + +L H+ +DKV Sbjct: 1080 TPIFDGASESEINDCLAEAGLPAHGKIRLTDGRTGEPMEQETTVGYIYMLKLHHLVDDKV 1139 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + RFGG +FGEME Sbjct: 1140 HARSTGPYSLITQQPLGGKARFGGQRFGEME 1170
>RPOB_CLOAB (Q97EG9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1241 Score = 83.6 bits (205), Expect = 2e-16 Identities = 46/151 (30%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ PF G I +NP P+R GQ Sbjct: 942 HGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAAANLGWHIA 1001 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A I E L + G++ G + +G+TG+ + + G + +L H+ +DK+ Sbjct: 1002 TPVFDGALEPEIVECLKRAGYAEDGKTVLYDGRTGEAFDNRVTVGYMYILKLAHLVDDKI 1061 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1062 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1092
>RPOB3_ENTFC (Q8GCR5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1208 Score = 83.6 bits (205), Expect = 2e-16 Identities = 46/151 (30%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +E+ PF G DI++NP P+R GQ Sbjct: 928 HGNKGVVSRIMPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + E + + G + + +G+TG+ + G + +L HM +DK+ Sbjct: 988 TPVFDGASDEDVWETVREAGMASDAKTILYDGRTGEPFDGRVSVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOB2_ENTFC (Q8GCR4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1208 Score = 83.6 bits (205), Expect = 2e-16 Identities = 46/151 (30%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +E+ PF G DI++NP P+R GQ Sbjct: 928 HGNKGVVSRIMPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + E + + G + + +G+TG+ + G + +L HM +DK+ Sbjct: 988 TPVFDGASDEDVWETVREAGMASDAKTILYDGRTGEPFDGRVSVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOB1_ENTFC (Q8GCR6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1208 Score = 83.6 bits (205), Expect = 2e-16 Identities = 46/151 (30%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +E+ PF G DI++NP P+R GQ Sbjct: 928 HGNKGVVSRIMPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + E + + G + + +G+TG+ + G + +L HM +DK+ Sbjct: 988 TPVFDGASDEDVWETVREAGMASDAKTVLYDGRTGEPFDGRVSVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOB4_ENTFC (Q8GCR3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1208 Score = 83.2 bits (204), Expect = 3e-16 Identities = 46/151 (30%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +E+ PF G DI++NP P+R GQ Sbjct: 928 HGNKGVVSRIMPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + E + + G + + +G+TG+ + G + +L HM +DK+ Sbjct: 988 TPVFDGASDEDVWETVREAGMASEAKTVLYDGRTGEPFDGRVSVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOB_LACSS (Q38UQ2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1197 Score = 83.2 bits (204), Expect = 3e-16 Identities = 43/151 (28%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG V + +E+ P+T G DI+++P P+R GQ Sbjct: 926 HGNKGTVSIVVPEEDMPYTPDGTPVDILLSPMGVPSRMNIGQVLELHLGMAARNLGIHVA 985 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A + + + + + G + +G+TG+ + + G +Y +L HM +DK+ Sbjct: 986 TPVFDGAQDKDLWDAVREANMPSDGKSILYDGRTGEPFDTRVSVGVMYYMKLAHMVDDKL 1045 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1046 HARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1076
>RPOB_SPICI (P47767) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1302 Score = 82.8 bits (203), Expect = 4e-16 Identities = 46/151 (30%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + E+ P G DI++NP P+R GQ Sbjct: 996 HGNKGVISKILPLEDMPHMEDGTPVDIMLNPLGVPSRMNIGQVLEIHLGMAAKKLGQKIS 1055 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F E + E + K G G E +++G+TG++ + + G + +L HM +DK+ Sbjct: 1056 TPVFDGMINEELIEIMDKAGMKNFGKEVLIDGRTGEKFDNPVSVGVMYMLKLSHMVDDKL 1115 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 RN GP +T+QP+ + + GG +FGEME Sbjct: 1116 HARNVGPYSLITQQPLGGKAQNGGQRFGEME 1146
>RPOB_MYCMS (Q6MRX6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1291 Score = 82.8 bits (203), Expect = 4e-16 Identities = 44/151 (29%), Positives = 71/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + E+ P G DI++NP P+R GQ Sbjct: 1005 HGNKGIISRILPVEDMPHLEDGTPVDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQKVI 1064 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F + + E + + G + G ++++GQTG+ I G + +L HM +DK+ Sbjct: 1065 TPAFEGLNEKELEEIMAEAGMTNYGKVTLIDGQTGEPFDKPIAVGVMYMLKLSHMVDDKI 1124 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 RN GP +T+QP+ + + GG +FGEME Sbjct: 1125 HARNVGPYSLITQQPLGGKAQNGGQRFGEME 1155
>RPOB_LACPL (Q88XZ3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1204 Score = 82.4 bits (202), Expect = 5e-16 Identities = 45/151 (29%), Positives = 69/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG V + +E+ P+ G DI+++P P+R GQ Sbjct: 929 HGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARKLGIHMA 988 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A I E + + G V +G+TG+ + G Y +L HM +DK+ Sbjct: 989 TPVFDGAQDTDIWEAIREAGVDSDAKSIVYDGRTGEPFDKRVAVGVMHYMKLSHMVDDKI 1048 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1049 HARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1079
>RPOB_MYCS5 (Q4A5S7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1203 Score = 82.0 bits (201), Expect = 7e-16 Identities = 44/151 (29%), Positives = 71/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P G DI++NP P+R GQ Sbjct: 966 HGNKGVISIILPEEDMPHLEDGTPLDIMLNPQGVPSRMNIGQVLEMHLGMAAKKLGTKFV 1025 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F E I + L + + G + V++ TG++ + I G + +L HM +DK+ Sbjct: 1026 TPSFDGIKKETIEDLLQEANLDKSGKQVVIDPITGEKFDNPISVGVIYMLKLNHMVDDKM 1085 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + + GG +FGEME Sbjct: 1086 HARSVGPYSLITQQPLGGKSQNGGQRFGEME 1116
>RPOB_STRMU (Q8DS46) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1187 Score = 82.0 bits (201), Expect = 7e-16 Identities = 45/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F AT + + E + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGATSDDLWETVKEAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSTITQQPLGGKAQFGGQRFGEME 1075
>RPOB_BACHK (Q6HPR6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 82.0 bits (201), Expect = 7e-16 Identities = 44/151 (29%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 928 HGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A E + + + G + + +G+TG+ + + G + +L HM +DK+ Sbjct: 988 TPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOB_BACCZ (Q63H98) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 82.0 bits (201), Expect = 7e-16 Identities = 44/151 (29%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 928 HGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A E + + + G + + +G+TG+ + + G + +L HM +DK+ Sbjct: 988 TPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOB_BACCR (Q81J48) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 82.0 bits (201), Expect = 7e-16 Identities = 44/151 (29%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 928 HGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A E + + + G + + +G+TG+ + + G + +L HM +DK+ Sbjct: 988 TPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOB_BACC1 (Q73FA4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 82.0 bits (201), Expect = 7e-16 Identities = 44/151 (29%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 928 HGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A E + + + G + + +G+TG+ + + G + +L HM +DK+ Sbjct: 988 TPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOB_BACAN (Q81VT8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 82.0 bits (201), Expect = 7e-16 Identities = 44/151 (29%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ Sbjct: 928 HGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIA 987 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A E + + + G + + +G+TG+ + + G + +L HM +DK+ Sbjct: 988 TPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMVDDKL 1047 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1048 HARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1078
>RPOL_KLULA (P05472) Probable DNA-directed RNA polymerase (EC 2.7.7.6) (Killer| plasmid PGKL2 protein 6) Length = 982 Score = 82.0 bits (201), Expect = 7e-16 Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Frame = +2 Query: 2 MHGQKGVVGFLESQENFPFTCQG---IVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXX 172 MHGQKG+V +E+ N P+ + + D++INPHAFP+R T GQ Sbjct: 520 MHGQKGIVSLIEN--NMPYYYKNGEKVEIDLIINPHAFPSRMTLGQ-------------- 563 Query: 173 XXRYATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMA 352 I E K E V T ++++ I G Y L H Sbjct: 564 ---------------IKEMGEK-------EEYVYIEDT--KLENKIIVGKCLYLALRHQV 599 Query: 353 EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLL 472 +DKV+FRN G + +T+QPV+ RKR GG++FG+MERD L+ Sbjct: 600 DDKVQFRNGGNIDIVTKQPVSGRKRSGGLRFGQMERDILI 639
>RPOB_STRA5 (Q8E239) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1191 Score = 80.9 bits (198), Expect = 2e-15 Identities = 45/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + E + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWETVQEAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRA3 (Q8E7J8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1191 Score = 80.9 bits (198), Expect = 2e-15 Identities = 45/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + E + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWETVQEAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRA1 (Q3K3L2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1191 Score = 80.9 bits (198), Expect = 2e-15 Identities = 45/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + E + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWETVQEAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_MYCH7 (Q4A7A9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1220 Score = 80.9 bits (198), Expect = 2e-15 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ PF G DIV+NP P+R GQ ++ Sbjct: 946 HGNKGVVSVILPVEDMPFLEDGTPVDIVLNPQGVPSRMNIGQVLELHLGMVAKKLKT-KF 1004 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 TP F +E I + + G + +G +G+ ++ + G + +L+HM +DK Sbjct: 1005 VTPVFDGIKIETIKKLFDEANIPESGKFKLFDGISGQAFENPVSVGYMYMLKLLHMVDDK 1064 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP T+QP+ + + GG +FGEME Sbjct: 1065 MHARSIGPYSLTTQQPLGGKSQNGGQRFGEME 1096
>RPOB_MYCH2 (Q5ZZS1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1220 Score = 80.9 bits (198), Expect = 2e-15 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ PF G DIV+NP P+R GQ ++ Sbjct: 946 HGNKGVVSVILPVEDMPFLEDGTPVDIVLNPQGVPSRMNIGQVLELHLGMVAKKLKT-KF 1004 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 TP F +E I + + G + +G +G+ ++ + G + +L+HM +DK Sbjct: 1005 VTPVFDGIKIETIKKLFDEANIPESGKFKLFDGISGQAFENPVSVGYMYMLKLLHMVDDK 1064 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP T+QP+ + + GG +FGEME Sbjct: 1065 MHARSIGPYSLTTQQPLGGKSQNGGQRFGEME 1096
>RPOB_LACLA (Q9CEN6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1196 Score = 80.9 bits (198), Expect = 2e-15 Identities = 46/151 (30%), Positives = 73/151 (48%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSNIVPMEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E I + + + G + + +G+TG+ + I G + +L HM +DK+ Sbjct: 985 TPVFDGASDEDIWDTVKEAGMADDAKTVLYDGRTGEPFDNRISVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_MYCHJ (Q4A969) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1220 Score = 80.5 bits (197), Expect = 2e-15 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ PF G DIV+NP P+R GQ ++ Sbjct: 946 HGNKGVVSVILPVEDMPFLEDGTPVDIVLNPQGVPSRMNIGQVLELHLGMVAKKLKT-KF 1004 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 TP F +E I + + G + +G +G+ ++ + G + +L+HM +DK Sbjct: 1005 VTPVFDGIKIETIKKLFDEANIPESGKFKLFDGISGQPFENPVSVGYMYMLKLLHMVDDK 1064 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP T+QP+ + + GG +FGEME Sbjct: 1065 MHARSIGPYSLTTQQPLGGKSQNGGQRFGEME 1096
>RPOB_MYCMO (Q6KI09) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 80.1 bits (196), Expect = 3e-15 Identities = 43/151 (28%), Positives = 70/151 (46%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + E+ P G V DI++NP P+R GQ Sbjct: 956 HGNKGVISIVAPVEDMPHLEDGTVIDIILNPQGVPSRMNIGQVLELHLGMAAKTLSTKFV 1015 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F I E L + G ++++ TG++ + + G + +L HM +DK+ Sbjct: 1016 SPGFDGLKFGTIQEILKEAKLPENGKFTLIDPMTGEKFDNKVSVGIMYMLKLSHMVDDKM 1075 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + + GG +FGEME Sbjct: 1076 HARSIGPYSLITQQPLGGKSQNGGQRFGEME 1106
>RPOB_STRPN (Q97NQ7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1203 Score = 79.7 bits (195), Expect = 4e-15 Identities = 44/151 (29%), Positives = 71/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSTVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRT2 (Q5M2F5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1193 Score = 79.7 bits (195), Expect = 4e-15 Identities = 44/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIYIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + + + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWDTVREAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRT1 (Q5LXV3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1193 Score = 79.7 bits (195), Expect = 4e-15 Identities = 44/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIYIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + + + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWDTVREAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRPM (Q48VR1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 79.7 bits (195), Expect = 4e-15 Identities = 44/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + + + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWDTVREAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRP8 (Q8P2Y3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 79.7 bits (195), Expect = 4e-15 Identities = 44/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + + + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWDTVREAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRP6 (Q5XE97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 79.7 bits (195), Expect = 4e-15 Identities = 44/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + + + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWDTVREAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRP3 (Q8K8W3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 79.7 bits (195), Expect = 4e-15 Identities = 44/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + + + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWDTVREAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRP1 (Q9A1U1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 79.7 bits (195), Expect = 4e-15 Identities = 44/151 (29%), Positives = 72/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + + + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 985 TPVFDGASSEDLWDTVREAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1044 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1045 HARSVGPYSLVTQQPLGGKAQFGGQRFGEME 1075
>RPOB_STRR6 (Q8DNF0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1216 Score = 79.7 bits (195), Expect = 4e-15 Identities = 44/151 (29%), Positives = 71/151 (47%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DI++NP P+R GQ Sbjct: 938 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIA 997 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A+ E + + + G + +G+TG+ + + G + +L HM +DK+ Sbjct: 998 TPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKL 1057 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1058 HARSVGPYSTVTQQPLGGKAQFGGQRFGEME 1088
>RPOB_LEPIN (Q8F0S2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1226 Score = 79.0 bits (193), Expect = 6e-15 Identities = 44/151 (29%), Positives = 69/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + ++E+ P+ G DIV+NP P+R GQ Sbjct: 979 HGNKGVVARVMAEEDMPYMEDGTPLDIVLNPLGVPSRMNLGQIFETQLGFAASKLGISFE 1038 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A + + + +G+TG + +F G + +L H+ EDK+ Sbjct: 1039 TPVFDGAEESDVDNFCKEANLPLNSKFKLYDGRTGLPFMNEVFCGYIYILKLAHLVEDKI 1098 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG + GEME Sbjct: 1099 HARSTGPYSLVTQQPLGGKAQFGGQRLGEME 1129
>RPOB_LEPIC (Q72UA8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1226 Score = 79.0 bits (193), Expect = 6e-15 Identities = 44/151 (29%), Positives = 69/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + ++E+ P+ G DIV+NP P+R GQ Sbjct: 979 HGNKGVVARVMAEEDMPYMEDGTPLDIVLNPLGVPSRMNLGQIFETQLGFAASKLGISFE 1038 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F A + + + +G+TG + +F G + +L H+ EDK+ Sbjct: 1039 TPVFDGAEESDVDNFCKEANLPLNSKFKLYDGRTGLPFMNEVFCGYIYILKLAHLVEDKI 1098 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+TGP +T+QP+ + +FGG + GEME Sbjct: 1099 HARSTGPYSLVTQQPLGGKAQFGGQRLGEME 1129
>RPOB_CHAGL (Q8MA12) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 79.0 bits (193), Expect = 6e-15 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + S+ + P+ G D+V++P P+R GQ Sbjct: 824 HGNKGIVSQILSRHDMPYLQNGTSIDMVLSPLGVPSRMNVGQILECLLGFAGKFLNKNYR 883 Query: 185 ATPFTT-----ATVEVISEQLHK----------LGFSRGGVESVLNGQTGKRMQSLIFAG 319 TPF A+ +++ +LHK L G + +G+TG+ + G Sbjct: 884 ITPFDERYEREASRKLVLSELHKAKKLTGYPWLLEPENAGKSRLFDGRTGETFNQPVTVG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R+TGP +T+QPV R R GG + GEME Sbjct: 944 SAYILKLIHQVDDKIHARSTGPYSLVTQQPVRGRSRGGGQRVGEME 989
>RPOB_MESFL (Q6F0L7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1284 Score = 79.0 bits (193), Expect = 6e-15 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + E+ P G DI++NP P+R GQ + Sbjct: 1004 HGNKGIISKVLPVEDMPHLEDGTPVDILLNPQGIPSRMNIGQILEIHLGMAAKKLGV-KI 1062 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F + E + + G G +++GQTG+ + I G + +L HM +DK Sbjct: 1063 ATPVFEGVNSNDLDEIMAEAGMENYGKVKLIDGQTGEAIDKPISVGVMYMLKLSHMVDDK 1122 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + + GG +FGEME Sbjct: 1123 LHARSVGPYSLITQQPLGGKAQNGGQRFGEME 1154
>RPOB_PARUW (Q6MDM1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1254 Score = 79.0 bits (193), Expect = 6e-15 Identities = 44/151 (29%), Positives = 69/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + + + PF G +I++NP P+R GQ Sbjct: 1033 HGNKGVVSKIVPEADMPFLSTGQTIEIILNPLGVPSRMNMGQLFETHLGIAAKHTGITVK 1092 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F E I E + K G G + +G +G+R + + G + +L H+ DK+ Sbjct: 1093 SPVFEGFPEEKIWEMMKKAGLPEDGKFFLYDGCSGERFDNSVVVGYIYMLKLSHLVADKI 1152 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R GP +T+QP+ + + GG +FGEME Sbjct: 1153 HARAVGPYSLVTQQPLGGKAQMGGQRFGEME 1183
>RPOB_GUITH (O78485) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1096 Score = 78.2 bits (191), Expect = 1e-14 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V+NP P+R GQ Sbjct: 821 HGNKGIISRILPRQDMPYLPDGTPVDLVLNPLGVPSRMNVGQIFECLLGLAAENLNKRFK 880 Query: 185 ATPF-----TTATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 TPF A+ +++E+L++ G G ++ +G+TG+ + + G Sbjct: 881 ITPFDEMHGAEASRVLVNEKLNEAKIKTGENWLFDLRHPGKITLYDGRTGEAFDNPVTIG 940 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 ++ +L+H+ +DK+ R+TGP +T+QP+ R + GG + GEME Sbjct: 941 VSYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEME 986
>RPOB_CHLTR (O84317) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 77.4 bits (189), Expect = 2e-14 Identities = 42/151 (27%), Positives = 68/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + + + PF G +++NP P+R GQ Sbjct: 1032 HGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVK 1091 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F I + + + G G + +G+TG+R S + G + +L H+ DK+ Sbjct: 1092 TPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDSKVVVGYIYMLKLSHLIADKI 1151 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + + GG +FGEME Sbjct: 1152 HARSIGPYSLVTQQPLGGKAQMGGQRFGEME 1182
>RPOB_CHLTA (Q3KM47) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 77.4 bits (189), Expect = 2e-14 Identities = 42/151 (27%), Positives = 68/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + + + PF G +++NP P+R GQ Sbjct: 1032 HGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVK 1091 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F I + + + G G + +G+TG+R S + G + +L H+ DK+ Sbjct: 1092 TPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDSKVVVGYIYMLKLSHLIADKI 1151 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + + GG +FGEME Sbjct: 1152 HARSIGPYSLVTQQPLGGKAQMGGQRFGEME 1182
>RPOB_CHLMU (P56869) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 77.4 bits (189), Expect = 2e-14 Identities = 42/151 (27%), Positives = 68/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + + + PF G +++NP P+R GQ Sbjct: 1032 HGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVK 1091 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F I + + + G G + +G+TG+R S + G + +L H+ DK+ Sbjct: 1092 TPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDSKVVVGYIYMLKLSHLIADKI 1151 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + + GG +FGEME Sbjct: 1152 HARSIGPYSLVTQQPLGGKAQMGGQRFGEME 1182
>RPOB_PHYPA (P60283) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1085 Score = 77.4 bits (189), Expect = 2e-14 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V++P P+R GQ Sbjct: 839 HGNKGIISKILPRQDMPYLQDGTPIDMVLSPLGVPSRMNVGQIFECLLGLAGYFLGKHYR 898 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 TPF A+ +++ +L+K G G +LNG+TG+ + + G Sbjct: 899 ITPFDEKYEREASRKLVFSELYKASKKTGNLWLFEPENPGKSRLLNGRTGEIFEQAVTVG 958 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++GP +T+QP+ R R GG + GEME Sbjct: 959 KAYMLKLIHQVDDKIHARSSGPYALVTQQPLRGRSRRGGQRVGEME 1004
>RPOB_ONYPE (Q6YQW3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1273 Score = 77.0 bits (188), Expect = 2e-14 Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 1/152 (0%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + +E+ P+ G DI++NP P+R GQ + Sbjct: 1035 HGNKGVISRILPKEDLPYMADGTPIDIMLNPLGVPSRMNIGQILEIHLGMAAKKLGI-KV 1093 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F + E + + G + +G+TG+ S I G + +L HM +DK Sbjct: 1094 ATPVFDGVNDYDLKEIMKEANLDPDGKMVLYDGRTGEPYDSRISVGVMYMVKLSHMVDDK 1153 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + RN GP +T+QP+ + + GG +FGEME Sbjct: 1154 LHARNVGPYTLVTQQPMGGKVQNGGQRFGEME 1185
>RPOB_PORPU (P51252) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1143 Score = 77.0 bits (188), Expect = 2e-14 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ C G DIV+NP P+R GQ Sbjct: 868 HGNKGIISRILPKQDMPYLCDGTPVDIVLNPLGVPSRMNVGQVFECLLGLAGGYLDKRFK 927 Query: 185 ATPF-----TTATVEVISEQLHKLGF----------SRGGVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L + G V +G+TG+ + + G Sbjct: 928 IIPFDEMYGAEASRALVNRKLQEASILTKNKWIFNDQHPGKMQVFDGRTGEPFDNPVTIG 987 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ R + GG + GEME Sbjct: 988 RAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEME 1033
>RPOB_MYCPU (Q98Q23) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1216 Score = 76.6 bits (187), Expect = 3e-14 Identities = 44/151 (29%), Positives = 70/151 (46%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + E+ P+ G DI++NP P+R GQ Sbjct: 965 HGNKGVISRVLPVEDMPYLEDGTPLDIILNPQGVPSRMNIGQVLELHLGMAAKKLGVKFV 1024 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 + F I + L + R G V + TG+++ + I G + +L HM +DK+ Sbjct: 1025 SPVFDGVKKADIMDALEEAKLPRTGKMKVFDPTTGEKIDNEISVGVMYMFKLSHMVDDKM 1084 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + + GG +FGEME Sbjct: 1085 HSRSIGPYSLITQQPLGGKSQNGGQRFGEME 1115
>RPOB_ODOSI (P49466) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1379 Score = 76.6 bits (187), Expect = 3e-14 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ PF G DI++NP P+R GQ Sbjct: 1109 HGNKGIISRILPRQDMPFLPDGTPVDIILNPLGVPSRMNVGQLYECLLGIAGHKLNRRFK 1168 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVES---------------VLNGQTGKRMQSLIFAG 319 PF +S L + +E+ +++G+TGK ++ I G Sbjct: 1169 ILPFDEMYGPEVSRILINKKLRQASIENDEAWLFNPYSPGKMVLIDGRTGKEFENPITVG 1228 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH+ +DK+ R TGP +T+QP+ + + GG +FGEME Sbjct: 1229 NAYMLKLIHLVDDKMHARATGPYSLITQQPLGGKAQHGGQRFGEME 1274
>RPOB_GLOVI (Q7NIA0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1112 Score = 76.3 bits (186), Expect = 4e-14 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 17/168 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +E+ P+ G DIV+NP P+R GQ Sbjct: 833 HGNKGIISKILPKEDMPYLPDGRPVDIVLNPLGVPSRMNVGQVFETLLGWAGACLNVRFK 892 Query: 185 ATPFTTATVEVISEQL--HKLGFSRG---------------GVESVLNGQTGKRMQSLIF 313 TPF ++ S L KL +R G V +G+TG+ + Sbjct: 893 VTPFDEMYIKEASRYLVHEKLMEAREVTGDPWVYSDTGKHIGKIQVYDGRTGEAFDRPVT 952 Query: 314 AGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G + +L+H+ +DK+ R+TGP +T+QP+ + + GG +FGEME Sbjct: 953 VGQIYMMKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEME 1000
>RPOB_HETCA (P36440) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1116 Score = 75.9 bits (185), Expect = 5e-14 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + ++ PF G DI++NP P+R GQ Sbjct: 808 HGNKGVISRILPHQDMPFLPDGTSVDIILNPLGVPSRMNVGQIFECLLGLAGDQLNKRFK 867 Query: 185 ATPF-----TTATVEVISEQLHKLG--------FSRGGVESVL--NGQTGKRMQSLIFAG 319 PF A+ +I+++L FS +L +G+TG++ + + G Sbjct: 868 ILPFDEMYQNEASRILINQKLKDAAKKQNKPWLFSAYSPGKILLSDGRTGEKFDNPVLVG 927 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 ++ +L H+ EDK+ R+TGP +T+QPV + + GG +FGEME Sbjct: 928 RSYILKLAHLVEDKIHARSTGPYSLITQQPVGGKSQNGGQRFGEME 973
>RPO2_FOWPV (Q9J544) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1161 Score = 75.9 bits (185), Expect = 5e-14 Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXX----------- 157 QKG + ++ S+ P+ G+ PDI+IN + +R+T Sbjct: 881 QKGTIAYIASESELPYDKNGVTPDIIINSTSIYSRKTISMLIEMILTSAYSVKPYNNNGK 940 Query: 158 -------XXXXXXXRYATPFTTATVEVISEQLHKLGFSRGGV-ESVL-NGQTGKRMQSLI 310 Y F + L K ES+L + +T K ++ + Sbjct: 941 NRPICFPSSNETDIEYYIEFARKCYQSAIPDLDKDELENEVYCESILYDPETDKPYKTKV 1000 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1001 FMGPLYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1055
>RPOB_CHLPN (Q9Z9A0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 74.7 bits (182), Expect = 1e-13 Identities = 40/151 (26%), Positives = 69/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + + + P+ G +++NP P+R GQ Sbjct: 1032 HGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVK 1091 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F + I + + + G G + +G+TG+R + + G + +L H+ DK+ Sbjct: 1092 TPVFEGFPEQRIWDMMIEQGLPEDGKSFLYDGKTGERFDNKVVIGYIYMLKLSHLIADKI 1151 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + + GG +FGEME Sbjct: 1152 HARSIGPYSLVTQQPLGGKAQMGGQRFGEME 1182
>RPOB_ADICA (Q85FM7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1071 Score = 74.3 bits (181), Expect = 1e-13 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + +++ P+ G D++++P P+R GQ Sbjct: 825 HGNKGIVSKIVPRQDMPYLQNGTPVDMILSPLGVPSRMNVGQIFECLLGLAGEFLETHYR 884 Query: 185 ATPFTT-----ATVEVISEQLHKLGF----------SRGGVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +LH+ G S G +++G+TG I G Sbjct: 885 VVPFDERYEREASRKLVFAELHEAGARTNNPWLFEPSHPGKSRLIDGRTGDPFGQSITTG 944 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++GP +T+QP+ + R GG + GEME Sbjct: 945 KAYIMKLIHQVDDKIHARSSGPYALVTQQPLKGKSRRGGQRIGEME 990
>RPO2_MONPV (Q8V4V3) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 74.3 bits (181), Expect = 1e-13 Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 30/185 (16%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQT----------------------- 121 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSTKPYNNKGE 948 Query: 122 ------PGQXXXXXXXXXXXXXXXXRYATPFTTATVEVISEQLHKLGFSRGGVESVL-NG 280 P Y+ P + E +S+++ E +L + Sbjct: 949 NRPVCFPSSNETSIDAYMQFAKQCYEYSNP--KLSEEELSDKIF--------CEKILYDP 998 Query: 281 QTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMER 460 +T K +S +F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMER Sbjct: 999 ETDKPYESKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMER 1058 Query: 461 DCLLA 475 DCL+A Sbjct: 1059 DCLIA 1063
>RPOB_CHLCV (Q822J1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 74.3 bits (181), Expect = 1e-13 Identities = 40/151 (26%), Positives = 68/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + + + P+ G +++NP P+R GQ Sbjct: 1032 HGNKGVVSKIVPEADMPYLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIHVK 1091 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F I + + + G G + +G+TG+R + + G + +L H+ DK+ Sbjct: 1092 TPVFEGFPESRIWDMMIEQGLPADGKSYLYDGKTGERFDNTVVIGYIYMLKLSHLIADKI 1151 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + + GG +FGEME Sbjct: 1152 HARSIGPYSLVTQQPLGGKAQMGGQRFGEME 1182
>RPOB_CHLAB (Q5L5I3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 74.3 bits (181), Expect = 1e-13 Identities = 40/151 (26%), Positives = 68/151 (45%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + + + P+ G +++NP P+R GQ Sbjct: 1032 HGNKGVVSKIVPEADMPYLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIHVK 1091 Query: 185 ATPFTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKV 364 F I + + + G G + +G+TG+R + + G + +L H+ DK+ Sbjct: 1092 TPVFEGFPESRIWDMMIEQGLPADGKSYLYDGKTGERFDNTVVIGYIYMLKLSHLIADKI 1151 Query: 365 KFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 R+ GP +T+QP+ + + GG +FGEME Sbjct: 1152 HARSIGPYSLVTQQPLGGKAQMGGQRFGEME 1182
>RPOB_HUPLU (Q5SCX8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1080 Score = 73.9 bits (180), Expect = 2e-13 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +E+ P+ G +++++P P+R GQ Sbjct: 835 HGNKGIISKILPREDMPYLQDGTPIEMILSPLGVPSRMNVGQIFECLLGLAGGFLKRHYR 894 Query: 185 ATPFTT-----ATVEVISEQLHKLG----------FSRGGVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L+K G G +++G+TG+ Q I G Sbjct: 895 VIPFDERYEREASRKLVFSELNKAGEQTTNPWLFELDNPGKSLLIDGRTGEIFQQPITIG 954 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++GP +T+QP+ R R GG + GEME Sbjct: 955 KAYMLKLIHQVDDKIHARSSGPYSLVTQQPLKGRSRMGGQRVGEME 1000
>RPOB_CHLVU (P56299) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1301 Score = 73.9 bits (180), Expect = 2e-13 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 16/167 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + +++ P+ G DIV+NP P+R GQ RY Sbjct: 1042 HGNKGIVSLILPRQDMPYLPDGTPVDIVLNPLGVPSRMNVGQILECLLGLAGHFLHE-RY 1100 Query: 185 ATPF------TTATVEVISEQLHKLGFS----------RGGVESVLNGQTGKRMQSLIFA 316 T A+ ++ +L++ G V +G+TG I A Sbjct: 1101 TTYLFDEQYGAEASRSLVYSKLYQASLKTRNPWVFEPHHPGKIRVFDGRTGLTFDQPITA 1160 Query: 317 GPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G + +L+H+ +DK+ R TGP +T+QPV R R GG + GEME Sbjct: 1161 GYAYILKLVHLVDDKIHARPTGPYSAITQQPVKGRARNGGQRLGEME 1207
>RPOB_EMIHU (Q4G3A7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1093 Score = 73.9 bits (180), Expect = 2e-13 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 13/164 (7%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G DI++NP P+R GQ Sbjct: 823 HGNKGIISKILPRQDMPYLPDGTPVDILLNPLGVPSRMNVGQIFECLLGLAAEHLNARFK 882 Query: 185 ATPF-------------TTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPN 325 PF +E +Q G + +GQTG+ + I G Sbjct: 883 VIPFDEMNGVEASRGFVNNTLMEAAEKQPWVFSTQHPGKMMLTDGQTGEMFDNPITVGRA 942 Query: 326 FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ R + GG + GEME Sbjct: 943 YVLKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQQGGQRLGEME 986
>RPOB_CORDI (P60280) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1175 Score = 73.9 bits (180), Expect = 2e-13 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 34/185 (18%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVVG + QE+ PF G DI++N H P R GQ Sbjct: 886 HGNKGVVGKILPQEDMPFMPDGTPVDIILNTHGVPRRMNIGQVLEVHLGWLAAAGWKIDT 945 Query: 185 ATPFTTATVEVISEQLHK-----------------------LGFSR-----------GGV 262 P ++ + E L+ LG SR G Sbjct: 946 EDPANAELLKTLPEDLYDVPAGSLTATPVFDGATNEEIAGLLGNSRPNRDGDVMVDENGK 1005 Query: 263 ESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVK 442 ++ +G++G+ + G + +L H+ ++K+ R+TGP +T+QP+ + +FGG + Sbjct: 1006 ATLFDGRSGEPFPYPVSVGYMYILKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQR 1065 Query: 443 FGEME 457 FGEME Sbjct: 1066 FGEME 1070
>RPOB_THEMA (P29398) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1263 Score = 73.6 bits (179), Expect = 3e-13 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 12/163 (7%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +E+ PF G +V+NP P+R GQ + Sbjct: 1024 HGNKGVVSNILPKEDMPFLPDGTPVQMVLNPLGIPSRMNVGQILETHLGWLAKLTGKW-F 1082 Query: 185 ATPFTTATVE-----VISEQLHKLGFSRGGVESVLNGQ-------TGKRMQSLIFAGPNF 328 ATP E + E+ K G G E+ NG+ TG+ + + G + Sbjct: 1083 ATPVFEGAKEDEILRPLYEERKKRGLHLGDDENNPNGKVVLRDGRTGEPFDNPVVVGYMY 1142 Query: 329 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 +LIH+A++K+ R+TGP + +QP+ + FGG + GEME Sbjct: 1143 MLKLIHIAKEKIHARSTGPYSLIHQQPLGGKSHFGGQRLGEME 1185
>RPOB_DEIRA (Q9RVV9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1179 Score = 73.6 bits (179), Expect = 3e-13 Identities = 55/196 (28%), Positives = 79/196 (40%), Gaps = 45/196 (22%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P+ G DIV NP P+R GQ ++ Sbjct: 902 HGNKGVVSKIVRPEDMPYLEDGTPVDIVFNPLGVPSRMNLGQILETHLGEVARLTGQ-KF 960 Query: 185 ATP-FTTATVEVISEQLH-----------------------------KLG---------- 244 TP F + T I E L KLG Sbjct: 961 ETPVFDSVTEATIKEMLEVAAAERLQARKDDGFELDKREQEVLDRAGKLGVIDAPGDDYE 1020 Query: 245 -----FSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQP 409 +R G + +G+TG+ + + G + +L HM EDK+ R+TGP +T+QP Sbjct: 1021 KGQMQLARTGKSILYDGRTGEPISGPVVVGIMYVMKLYHMVEDKLHARSTGPYSLITQQP 1080 Query: 410 VADRKRFGGVKFGEME 457 + + +FGG +FGEME Sbjct: 1081 LGGKAQFGGQRFGEME 1096
>RPOB_SYNP6 (Q5MZ23) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1100 Score = 73.6 bits (179), Expect = 3e-13 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + E+ P+ G DIV+NP P+R GQ Sbjct: 826 HGNKGIISRILPCEDMPYLPDGTPLDIVLNPLGVPSRMNVGQVFECMLGWAGQLLDARFK 885 Query: 185 ATPF--------TTATVEV-ISEQLHKLG----FS--RGGVESVLNGQTGKRMQSLIFAG 319 TPF + TV +SE + G FS G V +G+TG+ + G Sbjct: 886 VTPFDEMYGAEASRLTVNAKLSEAREQTGQPWVFSDDEPGKIQVYDGRTGEPFDRPVTVG 945 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ + + GG +FGEME Sbjct: 946 RAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEME 991
>RPOB_STAPU (Q32RW5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1068 Score = 73.6 bits (179), Expect = 3e-13 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +E+ P+ G D+V++P P+R GQ Sbjct: 822 HGNKGVVSRILPREDMPYMQDGTPIDMVLSPLGVPSRMNVGQLFECLLGLAGSYLNNHYR 881 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L+K G G S+ +G+TG+ + I G Sbjct: 882 IMPFDERFEREASRKLVFSELYKARKFTGYPWLFEPNSPGKSSLFDGRTGEIFEQSITVG 941 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIHM ++K+ R++GP +T+QP+ R GG + GEME Sbjct: 942 KAYMMKLIHMVDEKIHARSSGPYALVTQQPLRGRSNKGGQRVGEME 987
>RPOB_PELCD (Q3A6Q4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1368 Score = 73.2 bits (178), Expect = 3e-13 Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 51/202 (25%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXX-- 178 HG KGV+ + +E+ P+ G +IV+NP P+R GQ Sbjct: 1097 HGNKGVLSRVLPEEDMPYMADGTPVEIVLNPLGVPSRMNVGQILETHLGLAARGLGVQIQ 1156 Query: 179 ----RYATP---------------------------------------------FTTATV 211 RY TP F T Sbjct: 1157 EHLDRYYTPEAMRTKIGECYEDDRVAEFVDALPDDEVMQLARQLSRGVPMASPVFEGVTE 1216 Query: 212 EVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVH 391 E + Q+ + GF+ G ++ NG+TG+ + + G + +L H+ +DK+ R+ GP Sbjct: 1217 EQMKNQMERAGFASSGQMTLYNGKTGEAFKEKVTVGIMYMLKLHHLVDDKIHARSIGPYS 1276 Query: 392 PLTRQPVADRKRFGGVKFGEME 457 +T+QP+ + +FGG + GEME Sbjct: 1277 LVTQQPLGGKAQFGGQRLGEME 1298
>RPOB_CYAPA (P48119) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1103 Score = 73.2 bits (178), Expect = 3e-13 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G DI++NP P+R GQ Sbjct: 828 HGNKGIISKILPRQDMPYLPDGTPIDIILNPLGVPSRMNVGQVYECLLGWAAEHLGVRFK 887 Query: 185 ATPFTT-----ATVEVISEQLHK----------LGFSRGGVESVLNGQTGKRMQSLIFAG 319 PF A+ I E+L + + G + +G+TG+ + I G Sbjct: 888 LIPFDERFGKQASRTFIHEKLKEAKELTNKNWLFNSNHPGKIQLFDGRTGESFDNPIMVG 947 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ + + GG +FGEME Sbjct: 948 KAYMLKLVHLVDDKIHARSTGPYSLITQQPLGGKAQQGGQRFGEME 993
>RPOB_PROAC (Q6A6K6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1159 Score = 72.8 bits (177), Expect = 4e-13 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 32/183 (17%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXX----- 169 HG KGV+ + E+ PF G DI++NP P+R GQ Sbjct: 875 HGNKGVISKILPVEDMPFLPDGTPVDIILNPLGVPSRMNVGQVLEMHLGWIAHSGWDITQ 934 Query: 170 ------------------XXXRYATP-FTTATVEVISEQLH--------KLGFSRGGVES 268 R ATP F AT + I+ L ++ G + Sbjct: 935 AEGDWAERLREVGLIDIPEESRLATPVFDGATEQEITGLLQYGHPTRDGEMLVDTDGKAT 994 Query: 269 VLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 448 + +G+TG+ S + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FG Sbjct: 995 LFDGRTGEPFPSKVGVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG 1054 Query: 449 EME 457 EME Sbjct: 1055 EME 1057
>RPOB_CYAME (Q85FR7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1036 Score = 72.8 bits (177), Expect = 4e-13 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 5/156 (3%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + + + P+ G D+++NP P+R GQ Sbjct: 802 HGNKGIVARILPRCDMPYLPDGTPVDVILNPLGVPSRMNVGQLFEALLGLAAHRLRKRIK 861 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHM 349 PF A+ + +QL + S + + +G++G++ + + G + +L+H+ Sbjct: 862 IVPFDEMYHKEASRIFVHQQLKRAALSAQTI--LYDGRSGEKFDNAVTVGMAYMLKLVHL 919 Query: 350 AEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 ++K+ R+TGP +T+QP+ R + GG + GEME Sbjct: 920 VDEKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEME 955
>RPOB_ANASP (P22703) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1131 Score = 72.4 bits (176), Expect = 6e-13 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + E+ P+ G DIV+NP P+R GQ Sbjct: 856 HGNKGIISRILPIEDMPYLPDGSPVDIVLNPLGVPSRMNVGQVFECLLGWAGHTLGVRFK 915 Query: 185 ATPFTTATVEVISEQL--HKLGFSRG-------------GVESVLNGQTGKRMQSLIFAG 319 TPF E S ++ KL +R G V +G+TG+ + G Sbjct: 916 ITPFDEMYGEESSRRIVHGKLQEARDETGKDWVYNPDDPGKIMVYDGRTGEAFDRPVTIG 975 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ + + GG +FGEME Sbjct: 976 VAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEME 1021
>RPO2_VARV (P33811) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 72.4 bits (176), Expect = 6e-13 Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGE 948 Query: 191 ------------------PFTTATVEVISEQLHKLGFS-RGGVESVL-NGQTGKRMQSLI 310 F E ++ +L + S + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHLNPKLTEKELSDKIFCEKILYDPETDKPYASKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPOB_ANTFO (Q85BW1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1071 Score = 72.0 bits (175), Expect = 7e-13 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V++P P+R GQ Sbjct: 825 HGNKGIISKILPRQDMPYLQDGTPVDMVLSPLGVPSRMNVGQIFECLLGLAGDFLQKHYR 884 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 TPF A+ +++ +LH+ G +L+G+TG + + G Sbjct: 885 VTPFDERYEREASRKLVFSELHEASRQTANPWLFESDNPGKSGLLDGRTGDIFEEPVTIG 944 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++GP +T+QP+ + R GG + GEME Sbjct: 945 KAYMLKLIHQVDDKIHARSSGPYALVTQQPLRGKSRRGGQRVGEME 990
>RPOB_PSEAK (Q3ZJ93) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 2178 Score = 72.0 bits (175), Expect = 7e-13 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G DIV+NP P+R GQ Sbjct: 1931 HGNKGIISNILPRQDMPYLSDGTPLDIVLNPLGVPSRMNVGQILECLLGMAGYYLKQNFK 1990 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ ++ +L++ G G + +G+TG + + G Sbjct: 1991 IQPFDEIYGCEASRSLVYSKLYEARIKTGQDWLFNANHPGKTRLFDGRTGDCFKQPVTVG 2050 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH+ +DK+ R+TGP +T+QP+ R + GG + GEME Sbjct: 2051 VAYILKLIHLVDDKIHARSTGPYSLVTQQPLRGRSKQGGQRVGEME 2096
>RPO2_VACCA (O57230) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1156 Score = 72.0 bits (175), Expect = 7e-13 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 881 QKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGE 940 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 941 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDEELSDKIFCEKILYDPETDKPYASKV 1000 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1001 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1055
>RPO2_RABPU (Q6RZF8) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 72.0 bits (175), Expect = 7e-13 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGE 948 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDEELSDKIFCEKILYDPETDKPYASKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPO2_ECTVM (Q8JL90) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 72.0 bits (175), Expect = 7e-13 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNNGE 948 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPQLTDDELSDKVFCEKILYDPETDKPYASKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPO2_CWPXG (Q80DV1) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 72.0 bits (175), Expect = 7e-13 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGE 948 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDEELSDKIFCEKILYDPETDKPYTSKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPO2_CWPXB (P17474) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 72.0 bits (175), Expect = 7e-13 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGE 948 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDEELSDKIFCEKILYDPETDKPYASKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1120 Score = 72.0 bits (175), Expect = 7e-13 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + S ++ PF G DI++NP P+R GQ Sbjct: 863 HGNKGIISRILSLQDMPFLPDGTPVDIILNPLGVPSRMNVGQLFECLLGLAGEYSSKRFK 922 Query: 185 ATPF-----TTATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF + A+ ++ +L + G +++G+TG+ + + G Sbjct: 923 IIPFDEMYGSEASRALVYNKLKQASSMNDKSWLFNALHPGKVMLVDGRTGEFFDNPVTVG 982 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ R + GG + GEME Sbjct: 983 KAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEME 1028
>RPOB_SYNEL (Q8DL55) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1108 Score = 72.0 bits (175), Expect = 7e-13 Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + E+ PF G DIV+NP P+R GQ Sbjct: 824 HGNKGIISRILPVEDMPFLPDGRPVDIVLNPLGVPSRMNVGQVYECLLGWAGACLGRRFK 883 Query: 185 ATPFTTAT-VEVISEQLH-KLGFSRG-------------GVESVLNGQTGKRMQSLIFAG 319 TPF E E +H KL +R G V +G+TG+ + G Sbjct: 884 ITPFDEMHGKEKSRETVHAKLQEARDVTGQDWVFNPENPGKMVVYDGRTGEPFDRPVTVG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ + + GG +FGEME Sbjct: 944 MAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEME 989
>RPOB_NEPOL (Q9TL06) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1109 Score = 72.0 bits (175), Expect = 7e-13 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + +++ P+ G D+V+NP P+R GQ Sbjct: 860 HGNKGIVSRIVPRQDMPYLQDGTPVDMVLNPLGVPSRMNVGQVFECLLGLAGQRLGQQLK 919 Query: 185 ATPF-----TTATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 F A+ ++ +LH+ G G +++G+TG + G Sbjct: 920 VRAFDEMYGAEASRHLVYNKLHEASEVTGHHWLFDPNHPGKSRLIDGRTGDMFDQAVTIG 979 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R TGP +T+QP+ R + GG + GEME Sbjct: 980 QAYMLKLIHQVDDKIHARATGPYSLITQQPLGGRSKRGGQRLGEME 1025
>RPOB_MYCPA (Q73SE4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1175 Score = 71.6 bits (174), Expect = 1e-12 Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXX----- 169 HG KGV+G + QE+ PF G DI++N H P R GQ Sbjct: 889 HGNKGVIGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDG 948 Query: 170 ---------XXXRYATP--------FTTATVEVISEQLHKLGFSRGGVESV--------L 274 R+A P F A E ++ L +R G V Sbjct: 949 NPEWAVNLPEELRHAQPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLF 1008 Query: 275 NGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 454 +G++G+ + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FGEM Sbjct: 1009 DGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEM 1068 Query: 455 E 457 E Sbjct: 1069 E 1069
>RPOB_PROMA (Q7VA29) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1096 Score = 71.6 bits (174), Expect = 1e-12 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +E+ P+ G DIV+NP P+R GQ Sbjct: 830 HGNKGIISRILPREDMPYLPDGTPVDIVLNPLGVPSRMNVGQVFELLMGWAAANLDCRVK 889 Query: 185 ATPFTT---ATVEVISEQLH-KLGFSRGGVESVLN-----------GQTGKRMQSLIFAG 319 PF A + QL+ K + G E V N G+TG+ + G Sbjct: 890 VVPFDEMYGAEKSYETVQLYLKEAAKQPGKEWVFNPDDPGKLLLRDGRTGEAFDQPVAVG 949 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + + +L+H+ +DK+ R+TGP +T+QP+ + + GG + GEME Sbjct: 950 YSHFLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEME 995
>RPO2_VACCV (Q76ZP7) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 71.6 bits (174), Expect = 1e-12 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYVADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGE 948 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDEELSDKIFCEKILYDPETDKPYASKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPO2_VACCT (Q9JF79) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 71.6 bits (174), Expect = 1e-12 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYVADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGE 948 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDEELSDKIFCEKILYDPETDKPYASKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPO2_VACCC (P68694) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 71.6 bits (174), Expect = 1e-12 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYVADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGE 948 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDEELSDKIFCEKILYDPETDKPYASKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPOB_MESVI (Q9MUS5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1080 Score = 71.6 bits (174), Expect = 1e-12 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V+NP P+R GQ Sbjct: 832 HGNKGIISKILPRQDMPYLQDGTPVDMVLNPLGVPSRMNVGQVFECLLGLAGEYLSENYK 891 Query: 185 ATPFTTATVEVISEQL---------HKLGF------SRGGVESVLNGQTGKRMQSLIFAG 319 PF + S L K G+ G + +G+TG+ + G Sbjct: 892 LMPFDEMYGKETSRGLVYSKLYEARQKTGYPWLFNIQSPGKSKLFDGRTGESFDQPVTIG 951 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ R + GG + GEME Sbjct: 952 KAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRAKHGGQRLGEME 997
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 71.6 bits (174), Expect = 1e-12 Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 32/183 (17%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ------------------ 130 HG KGV+ + E+ PF G DI++NP A P+R PGQ Sbjct: 875 HGNKGVISKINPIEDMPFLEDGTPVDIILNPLAVPSRMNPGQVLEIHLGWLASRGWDVSG 934 Query: 131 -----XXXXXXXXXXXXXXXXRYATP-FTTATVEVISEQLHKLGFSRGGVESVL------ 274 ATP F A + ++ L +R G VL Sbjct: 935 LAEEWAQRLQVIGADKVEPGTNVATPVFDGAREDELAGLLQHTIPNRDGERMVLPSGKAR 994 Query: 275 --NGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 448 +G++G+ I G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FG Sbjct: 995 LFDGRSGEPFPEPISVGYMYILKLHHLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFG 1054 Query: 449 EME 457 EME Sbjct: 1055 EME 1057
>RPOB_PROMP (Q7V006) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1097 Score = 71.6 bits (174), Expect = 1e-12 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 19/170 (11%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +E+ P+ G DIV+NP P+R GQ Sbjct: 830 HGNKGIISRILPREDMPYLPDGTPVDIVLNPLGVPSRMNVGQVFELLMGWAASNLNCRVK 889 Query: 185 ATPF--------TTATVEVISEQLHKLGFSRGGVESVLN-----------GQTGKRMQSL 307 PF + TV+ E+ K + G + V N G+TG+ Sbjct: 890 VVPFDEMYGAEKSHQTVQAFLEEASK----QDGKDWVYNPKDPGKLLLKDGRTGEPFDQP 945 Query: 308 IFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + G + + +L+H+ +DK+ R+TGP +T+QP+ + + GG + GEME Sbjct: 946 VAVGYSHFLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEME 995
>RPOB_THEAQ (Q9KWU7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1119 Score = 71.2 bits (173), Expect = 1e-12 Identities = 56/195 (28%), Positives = 77/195 (39%), Gaps = 44/195 (22%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P G D+++NP P+R GQ RY Sbjct: 843 HGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQ-RY 901 Query: 185 ATP-FTTATVEVISEQL-----------------------------HKLGFSRGGVES-- 268 +P F AT I E L KLG G Sbjct: 902 ISPVFDGATEPEIKELLAEAFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPEE 961 Query: 269 ------------VLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPV 412 + +G+TG+ + I G F +L HM EDK+ R+TGP +T+QP+ Sbjct: 962 QLKELFDLGKVVLYDGRTGEPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPL 1021 Query: 413 ADRKRFGGVKFGEME 457 + +FGG +FGEME Sbjct: 1022 GGKAQFGGQRFGEME 1036
>RPO2_CAMPS (Q775Q3) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 71.2 bits (173), Expect = 1e-12 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSVKPYNNKGE 948 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSEEELSDKIFCEKILYDPETDKPYGSKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPO2_CAMPM (Q8V2N1) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 71.2 bits (173), Expect = 1e-12 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRYAT 190 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 889 QKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSVKPYNNKGE 948 Query: 191 ------PFTTATVEVISEQLHKLGFSRGG-------------VESVL-NGQTGKRMQSLI 310 P + T Q K + E +L + +T K S + Sbjct: 949 NRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSEEELSDKIFCEKILYDPETDKPYGSKV 1008 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ RKR GG+KFGEMERDCL+A Sbjct: 1009 FFGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIA 1063
>RPOB_SACOF (Q6ENX3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 71.2 bits (173), Expect = 1e-12 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888 Query: 185 ATPFTTATVEVISEQLHKLGFSR------------------GGVESVLNGQTGKRMQSLI 310 PF + E KL FS G + +G+TG + + Sbjct: 889 IAPFDERYEQ---EASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPV 945 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G ++ +LIH ++K+ R+TGP +T+QPV R + GG + GEME Sbjct: 946 LIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEME 994
>RPOB_SACHY (Q6L3A7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 71.2 bits (173), Expect = 1e-12 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888 Query: 185 ATPFTTATVEVISEQLHKLGFSR------------------GGVESVLNGQTGKRMQSLI 310 PF + E KL FS G + +G+TG + + Sbjct: 889 IAPFDERYEQ---EASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPV 945 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G ++ +LIH ++K+ R+TGP +T+QPV R + GG + GEME Sbjct: 946 LIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEME 994
>RPOB_ORYSA (P12091) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 71.2 bits (173), Expect = 1e-12 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888 Query: 185 ATPFTTATVEVISEQLHKLGFSR------------------GGVESVLNGQTGKRMQSLI 310 PF + E KL FS G + +G+TG + + Sbjct: 889 IAPFDERYEQ---EASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPV 945 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G ++ +LIH ++K+ R+TGP +T+QPV R + GG + GEME Sbjct: 946 LIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEME 994
>RPOB_ORYNI (Q6ENI4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 71.2 bits (173), Expect = 1e-12 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888 Query: 185 ATPFTTATVEVISEQLHKLGFSR------------------GGVESVLNGQTGKRMQSLI 310 PF + E KL FS G + +G+TG + + Sbjct: 889 IAPFDERYEQ---EASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPV 945 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G ++ +LIH ++K+ R+TGP +T+QPV R + GG + GEME Sbjct: 946 LIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEME 994
>RPOB_MAIZE (P16023) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 71.2 bits (173), Expect = 1e-12 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 829 HGNKGIISKILPRQDMPYLQDGAPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888 Query: 185 ATPFTTATVEVISEQLHKLGFSR------------------GGVESVLNGQTGKRMQSLI 310 PF + E KL FS G + +G+TG + + Sbjct: 889 IAPFDERYEQ---EASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPV 945 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G ++ +LIH ++K+ R+TGP +T+QPV R + GG + GEME Sbjct: 946 LIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEME 994
>RPOB_COREF (Q8FS97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1171 Score = 71.2 bits (173), Expect = 1e-12 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 34/185 (18%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVVG + QE+ PF G DI++N H P R GQ Sbjct: 883 HGNKGVVGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQVLETHLGWLAAAGWSVDP 942 Query: 185 ATPFTTATVEVISEQLHK-----------------------LGFSR-----------GGV 262 P ++ + ++L+ L SR G Sbjct: 943 EDPKNAELIKTLPKELYDVPAGSLTATPVFDGASNEELAGLLANSRPNRDGDVMVNADGK 1002 Query: 263 ESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVK 442 ++++G++G+ + G + +L H+ ++K+ R+TGP +T+QP+ + +FGG + Sbjct: 1003 ATLIDGRSGEPYPYPVSIGYMYMLKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQR 1062 Query: 443 FGEME 457 FGEME Sbjct: 1063 FGEME 1067
>RPOB_WHEAT (Q9XPS7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1076 Score = 70.9 bits (172), Expect = 2e-12 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 830 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 889 Query: 185 ATPFTTATVEVISEQLHKLGFSR------------------GGVESVLNGQTGKRMQSLI 310 PF + E KL FS G + +G+TG + + Sbjct: 890 IAPFDERYEQ---EASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPV 946 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G ++ +LIH ++K+ R+TGP +T+QPV R + GG + GEME Sbjct: 947 LIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRVGEME 995
>RPOB_SYNY3 (P77965) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1102 Score = 70.9 bits (172), Expect = 2e-12 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + E+ P+ G DI +NP P+R GQ Sbjct: 826 HGNKGIISRILPIEDMPYLPDGRPIDIALNPLGVPSRMNVGQVFECLLGWAGENLGVRFK 885 Query: 185 ATPFTTATVEVIS-EQLHKL--------------GFSRGGVESVLNGQTGKRMQSLIFAG 319 TPF E S + +H L + G V +G+TG+ I G Sbjct: 886 ITPFDEMYGEEASRDTVHGLLEEASQRPNKDWVFNENHPGKIQVFDGRTGEPFDRPITVG 945 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ + + GG +FGEME Sbjct: 946 QAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEME 991
>RPOB_THEFY (Q47LI5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1155 Score = 70.9 bits (172), Expect = 2e-12 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 32/183 (17%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXX----------- 151 HG KGV+ + +E+ PF G DIV+NP P R GQ Sbjct: 869 HGNKGVIAKILPKEDMPFLEDGTPVDIVLNPLGVPGRMNIGQIMEMHLGWLAKHGWKVEG 928 Query: 152 ------------XXXXXXXXXRYATPFTTATVE---------VISEQLHKLGFSRGGVES 268 + ATP E V+ +Q + ++ G Sbjct: 929 DDAEWKRRLRDIGAHEAPPNSKVATPVFDGAREDEISGLLSCVLPDQDGDILVNKFGKAK 988 Query: 269 VLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 448 + +G+TG+ + + G ++ +L H+ +DK+ R+TGP +T+QP+ + +FGG +FG Sbjct: 989 LYDGRTGEPFKEPVAVGYAYFLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG 1048 Query: 449 EME 457 EME Sbjct: 1049 EME 1051
>RPOB_PINKO (Q85X54) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 70.5 bits (171), Expect = 2e-12 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ GI D+V+NP P+R GQ Sbjct: 829 HGNKGIISIILPRQDMPYLQNGIPVDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYR 888 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 TPF A+ +++ +L+K G +++G+TG + + G Sbjct: 889 ITPFDEKYEREASRKLVFPELYKASEQTANPWVFEPDHPGKHRLIDGRTGAVFEQPVTIG 948 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L H ++K+ R++GP +T+QP+ + + GG + GEME Sbjct: 949 KAYMSKLSHQVDEKIHARSSGPYARVTQQPLRGKSKRGGQRIGEME 994
>RPOB_ZYGCR (Q32RG0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1063 Score = 70.1 bits (170), Expect = 3e-12 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + +++ P+ G D+V++P P+R GQ Sbjct: 815 HGNKGVVSRILPRQDMPYLQDGTPVDMVLSPLGVPSRMNVGQVFECLLGLAGGYLNQHYR 874 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF ++ +++ +L+K + G + +G+TG+ + G Sbjct: 875 IMPFDERYGRESSRKLVFSELYKASQTTNYPWIFEPDSPGKSRLFDGRTGEVFNQPVTVG 934 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R+TGP +T+QPV R R GG + GEME Sbjct: 935 RAYMFKLIHQVDDKIHARSTGPYALVTQQPVRGRSRQGGQRVGEME 980
>RPOB_MARPO (P06272) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1065 Score = 70.1 bits (170), Expect = 3e-12 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ PF G D++++P P+R GQ Sbjct: 819 HGNKGIISKILPRQDMPFLQDGTPIDMILSPLGVPSRMNVGQIFECLLGLAGSFLHKNYR 878 Query: 185 ATPFTT-----ATVEVISEQLHKLGFS----------RGGVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L+K G +++G+TG+ + I G Sbjct: 879 IIPFDERYEREASRKLVFSELYKASKKTTNPWLFEPDNPGKNRLIDGRTGEIFEQPITIG 938 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++GP +T+QP+ R R GG + GEME Sbjct: 939 KAYMLKLIHQVDDKIHARSSGPYALVTQQPLRGRSRRGGQRVGEME 984
>RPOB_THET8 (Q8RQE9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1119 Score = 69.7 bits (169), Expect = 4e-12 Identities = 56/197 (28%), Positives = 81/197 (41%), Gaps = 46/197 (23%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P G D+++NP P+R GQ RY Sbjct: 843 HGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQ-RY 901 Query: 185 ATPFTTAT-------------------------------VEVI---------------SE 226 +P VEV+ E Sbjct: 902 ISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEE 961 Query: 227 QLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQ 406 QL +L F +G V + +G+TG+ ++ I G F +L HM EDK+ R+TGP +T+Q Sbjct: 962 QLKEL-FLQGKVV-LYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQ 1019 Query: 407 PVADRKRFGGVKFGEME 457 P+ + +FGG +FGEME Sbjct: 1020 PLGGKAQFGGQRFGEME 1036
>RPOB_THET2 (Q72HM5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1119 Score = 69.7 bits (169), Expect = 4e-12 Identities = 56/197 (28%), Positives = 81/197 (41%), Gaps = 46/197 (23%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVV + E+ P G D+++NP P+R GQ RY Sbjct: 843 HGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQ-RY 901 Query: 185 ATPFTTAT-------------------------------VEVI---------------SE 226 +P VEV+ E Sbjct: 902 ISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKPPEE 961 Query: 227 QLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQ 406 QL +L F +G V + +G+TG+ ++ I G F +L HM EDK+ R+TGP +T+Q Sbjct: 962 QLKEL-FLQGKVV-LYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQ 1019 Query: 407 PVADRKRFGGVKFGEME 457 P+ + +FGG +FGEME Sbjct: 1020 PLGGKAQFGGQRFGEME 1036
>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1081 Score = 69.7 bits (169), Expect = 4e-12 Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G DI++NP P+R GQ Sbjct: 824 HGNKGIISKILPRQDMPYLPNGTPVDIILNPLGVPSRMNVGQIFECILGISAFNLKKRFR 883 Query: 185 ATPF-----TTATVEVISEQLHK----------LGFSRGGVESVLNGQTGKRMQSLIFAG 319 PF + ++ +I+++L + + G ++ +G++G++ + + G Sbjct: 884 ILPFDEMYESDSSRILINQKLKEAQTLTNLDYLFNENHLGKVALFDGRSGEKFDNPVLVG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ + + GG + GEME Sbjct: 944 KIYMMKLVHLVDDKIHSRSTGPYSLVTQQPLGGKAQQGGQRLGEME 989
>RPOB_PINTH (P41607) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 69.7 bits (169), Expect = 4e-12 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ GI D+V+NP P+R GQ Sbjct: 829 HGNKGIISIVLPRQDMPYLQNGIPVDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYR 888 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 TPF A+ +++ +L+K G +++G+TG + + G Sbjct: 889 ITPFDEKYEREASRKLVFPELYKASEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPVTIG 948 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L H ++K+ R++GP +T+QP+ + + GG + GEME Sbjct: 949 KAYMSKLSHQVDEKIHARSSGPYARVTQQPLRGKSKRGGQRIGEME 994
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 69.7 bits (169), Expect = 4e-12 Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ------------------ 130 HG KGV+ + E+ PF G DI++NP P+R PGQ Sbjct: 895 HGNKGVISKILPIEDMPFLEDGTPVDIILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSG 954 Query: 131 -----XXXXXXXXXXXXXXXXRYATP-FTTATVEVISEQLHKLGFSRGGVESVL------ 274 ATP F A + ++ L +R G VL Sbjct: 955 LADDWAQRLQAIEADQVAPGTNVATPVFDGAREDELAGLLQHTIPNRDGERMVLPTGKAP 1014 Query: 275 --NGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 448 +G++G+ I G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FG Sbjct: 1015 LFDGRSGEPFPEPISVGYMYILKLHHLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFG 1074 Query: 449 EME 457 EME Sbjct: 1075 EME 1077
>RPO2_SHEVK (P16716) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| (HM1 protein) (Fragment) Length = 919 Score = 69.7 bits (169), Expect = 4e-12 Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 20/175 (11%) Frame = +2 Query: 11 QKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXR--- 181 QKG V ++ + P+ GI PD++IN + +R+T Sbjct: 645 QKGTVAYIADETELPYDENGIKPDVIINSTSIFSRKTVSMLIEVILTSAYEVSPYNNDGQ 704 Query: 182 -------YATPFTTATVEVISEQLHKLGFSRGGVESV----------LNGQTGKRMQSLI 310 + + T +++ H+ + + + + +T K S I Sbjct: 705 NRPICFPSSNETSIDTYLDFAKRCHRDRYPSLSDDDINDKMFCDTILYDPETDKPYSSKI 764 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 475 F GP +Y RL H+ +DK R G L RQ R+R GG+KFGEMERDCL+A Sbjct: 765 FMGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRRRGGGIKFGEMERDCLIA 819
>RPOB_CORJK (Q4JT32) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1164 Score = 69.3 bits (168), Expect = 5e-12 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 36/187 (19%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVVG + QE+ PF G DI++N H P R GQ Sbjct: 871 HGNKGVVGKILPQEDMPFLPDGTPIDIILNTHGVPRRMNIGQVLEVHLGWLAKAGWKVDP 930 Query: 185 AT--PFTTATVEVISEQLHKL--------------------GFSRG-------------- 256 + P +E + E+L+++ G R Sbjct: 931 DSQDPKIQKMLETLPEELYEIPADSLTATPVFDGASNAELSGLLRSSLPNRDGERQVDDF 990 Query: 257 GVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGG 436 G ++++G++G+ + G + +L H+ ++K+ R+TGP +T+QP+ + +FGG Sbjct: 991 GKSNLIDGRSGEPFPYPVAVGYMYMLKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGG 1050 Query: 437 VKFGEME 457 +FGEME Sbjct: 1051 QRFGEME 1057
>RPOB_CORGL (Q8NT26) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1165 Score = 68.9 bits (167), Expect = 6e-12 Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 34/185 (18%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGVVG + QE+ PF G DI++N H P R GQ Sbjct: 877 HGNKGVVGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQVLETHLGWLASAGWSVDP 936 Query: 185 ATPFTTATVEVISEQLHK-----------------------LGFSR-----------GGV 262 P V+ + L + L SR G Sbjct: 937 EDPENAELVKTLPADLLEVPAGSLTATPVFDGASNEELAGLLANSRPNRDGDVMVNADGK 996 Query: 263 ESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVK 442 ++++G++G+ + G + +L H+ ++K+ R+TGP +T+QP+ + +FGG + Sbjct: 997 ATLIDGRSGEPYPYPVSIGYMYMLKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQR 1056 Query: 443 FGEME 457 FGEME Sbjct: 1057 FGEME 1061
>RPOB2_CHLRE (Q8HTL7) DNA-directed RNA polymerase beta chain C-terminal subunit| (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta C-terminal section) (RNA polymerase beta subunit C-terminal section) Length = 626 Score = 68.9 bits (167), Expect = 6e-12 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + +++ PF G DIV+NP P+R GQ Sbjct: 336 HGNKGIVSRILPRQDMPFLPDGAAVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYK 395 Query: 185 ATPF-----TTATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ + +L++ G G + +G+ + + G Sbjct: 396 IPPFDEMYGADASRSFVLSKLYEARKKTGLKWLLDPNHPGKIRLFDGRNSECFDQTVTVG 455 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+HM +DK+ R+TGP +T+QP+ R + GG + GEME Sbjct: 456 IAYVLKLVHMVDDKMHARSTGPYSLVTQQPLRGRSKQGGQRLGEME 501
>RPOB1_NOCFA (Q5YQP4) DNA-directed RNA polymerase beta chain 1 (EC 2.7.7.6) (RNAP| beta subunit 1) (Transcriptase beta chain 1) (RNA polymerase beta subunit 1) Length = 1162 Score = 68.9 bits (167), Expect = 6e-12 Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 30/181 (16%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXX----- 169 HG KGV+G + E+ PF G DI++N H P R GQ Sbjct: 876 HGNKGVIGKILPTEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIGKAGWKVEG 935 Query: 170 ----------------XXXRYATP-FTTATVEVISEQLHKLGFSRGGVESV--------L 274 ATP F A E ++ L +R G V Sbjct: 936 NPEWAKDLPEEMWEAPADSNIATPVFDGAREEELTGLLGSTLPNRDGERMVDDNGKAVLF 995 Query: 275 NGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 454 +G++G+ + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FGEM Sbjct: 996 DGRSGEPFPYPVAVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEM 1055 Query: 455 E 457 E Sbjct: 1056 E 1056
>RPOB2_NOCFA (Q5YPE0) DNA-directed RNA polymerase beta chain 2 (EC 2.7.7.6) (RNAP| beta subunit 2) (Transcriptase beta chain 2) (RNA polymerase beta subunit 2) Length = 1163 Score = 68.9 bits (167), Expect = 6e-12 Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 30/181 (16%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXX----- 169 HG KGV+G + E+ PF G DI++N H P R GQ Sbjct: 876 HGNKGVIGKILPTEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIGKAGWKVEG 935 Query: 170 ----------------XXXRYATP-FTTATVEVISEQLHKLGFSRGGVESV--------L 274 ATP F A E ++ L +R G V Sbjct: 936 NPEWAKDLPEEMWEAPADSNIATPVFDGAREEELTGLLGSTLPNRDGERMVDDNGKAVLF 995 Query: 275 NGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 454 +G++G+ + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FGEM Sbjct: 996 DGRSGEPFPYPVAVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEM 1055 Query: 455 E 457 E Sbjct: 1056 E 1056
>RPOB_PROMM (Q7V5P1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1097 Score = 68.6 bits (166), Expect = 8e-12 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +E+ PF G DIV+NP P+R GQ Sbjct: 830 HGNKGIISRILPREDMPFLPDGTPVDIVLNPLGVPSRMNVGQVFECLMGWAAANLDCRVK 889 Query: 185 ATPF--------TTATVEVISEQLHK-------LGFSRGGVESVLNGQTGKRMQSLIFAG 319 PF + TVE ++ K G +++G++G+ + G Sbjct: 890 VVPFDEMYGAEKSQQTVEAYLKEAAKQPGKEWVYNPDNPGKLQLIDGRSGEPFDQPVTVG 949 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 +L+H+ +DK+ R+TGP +T+QP+ + + GG + GEME Sbjct: 950 YAQILKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEME 995
>RPOB_MYCLE (P30760) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 68.6 bits (166), Expect = 8e-12 Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 33/184 (17%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+G + E+ PF G DI++N H P R GQ Sbjct: 889 HGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDV 948 Query: 185 ATPFTTATVEVISEQLH---------------KLGFSRGGVESVL--------------- 274 A V + E LH K +G + S L Sbjct: 949 AGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKA 1008 Query: 275 ---NGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 445 +G++G+ + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +F Sbjct: 1009 VLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRF 1068 Query: 446 GEME 457 GEME Sbjct: 1069 GEME 1072
>RPOB_PSINU (Q8WI24) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1066 Score = 68.6 bits (166), Expect = 8e-12 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + +++ P G D++++P P+R GQ Sbjct: 820 HGNKGIVSKILPRQDMPHLQDGTPVDMILSPLGVPSRMNVGQIFECLLGLAGDFMQRHYR 879 Query: 185 ATPFTTATVEVISEQLHKLGFSR------------------GGVESVLNGQTGKRMQSLI 310 TPF E KL FS G +++G+TG + + Sbjct: 880 ITPFDERFER---EASRKLVFSELCEASEKTRNPWLFEPDYPGKSRLIDGRTGDTFEQPV 936 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G + +LIH +DK+ R++GP +T+QP+ R R GG + GEME Sbjct: 937 TVGKAYMMKLIHQVDDKIHARSSGPYALITQQPLRGRSRRGGQRVGEME 985
>RPOB_AMYMD (Q9L637) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1167 Score = 68.6 bits (166), Expect = 8e-12 Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 30/181 (16%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQX----------------- 133 HG KGV+G + E+ PF G DI++N H P R GQ Sbjct: 880 HGNKGVIGKILPVEDMPFMEDGTPVDIILNTHGVPRRMNIGQILELHLGWLASQGWTIEG 939 Query: 134 ----XXXXXXXXXXXXXXXRYATP-FTTATVEVISEQLHKLGFSRGGVESV--------L 274 ATP F A E ++ L +R G V Sbjct: 940 DPDWAKNLSAELRDVAPGTNTATPVFDGAKEEELTGLLSATKPNRDGERMVKENGKANLF 999 Query: 275 NGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 454 +G++G+ + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FGEM Sbjct: 1000 DGRSGEPYPYPVAVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEM 1059 Query: 455 E 457 E Sbjct: 1060 E 1060
>RPOB_NYMAL (Q6EW56) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1071 Score = 67.8 bits (164), Expect = 1e-11 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 825 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQMFECSLGLAGDLLGRHYR 884 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 TPF A+ +++ +L++ G + +G+TG + + G Sbjct: 885 ITPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIG 944 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 ++ +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 945 KSYMLKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 990
>RPOB_ACOGR (Q5QA72) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1071 Score = 67.8 bits (164), Expect = 1e-11 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + S+++ P+ G D+V NP P+R GQ Sbjct: 825 HGNKGIISKILSRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYR 884 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 885 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVLIG 944 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 ++ +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 945 KSYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 990
>RPOB_ACOCL (Q3V542) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1083 Score = 67.8 bits (164), Expect = 1e-11 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + S+++ P+ G D+V NP P+R GQ Sbjct: 837 HGNKGIISKILSRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYR 896 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 897 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVLIG 956 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 ++ +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 957 KSYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 1002
>RPOB_SYNPX (Q7U8K4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1097 Score = 67.4 bits (163), Expect = 2e-11 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +E+ P+ G DI +NP P+R GQ Sbjct: 830 HGNKGIISRILPREDMPYLPDGTPVDICLNPLGVPSRMNVGQVFELLMGWAASNLDSRVR 889 Query: 185 ATPFTTATVEVISEQ----LHKLGFSRGGVESVLN-----------GQTGKRMQSLIFAG 319 PF +S++ K + G V N G+TG+ + G Sbjct: 890 IVPFDEMHGAEMSQETCEAFLKEAAKQPGKAWVYNPDDPGKLVLRDGRTGQPFDQPVAVG 949 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + + +L+H+ +DK+ R+TGP +T+QP+ + + GG + GEME Sbjct: 950 YSHFLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEME 995
>RPOB_SOYBN (Q8HVY5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 67.4 bits (163), Expect = 2e-11 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + S+++ P+ G D+V NP P+R GQ Sbjct: 824 HGNKGIVSKILSRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGMLERHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 TPF A+ +++ +L++ G + +G+TG + G Sbjct: 884 ITPFDERYEQEASRKLVFSELYEASKQTSNPWIFEPEYPGKSKIFDGRTGNSFKQPAIMG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 KPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989
>RPOB_LEIXX (Q6ACX5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1165 Score = 67.0 bits (162), Expect = 2e-11 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 30/181 (16%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQX----------------- 133 HG KGV+ + E+ PF G D+++NP P R GQ Sbjct: 880 HGNKGVISKILPVEDMPFLADGTPVDVILNPLGVPGRMNFGQVLEIHLGWIAKNGWEIKG 939 Query: 134 ----XXXXXXXXXXXXXXXRYATP-FTTATVEVISEQLHKLGFSR--------GGVESVL 274 + ATP F A E I+ L +R G + Sbjct: 940 KPKWAAELPETAFSAAPNTKVATPVFDGAKEEEIAGLLDVTLPTRDGDRLIGSSGKTQLF 999 Query: 275 NGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEM 454 +G++G+ + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FGEM Sbjct: 1000 DGRSGEPYPDPVSVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEM 1059 Query: 455 E 457 E Sbjct: 1060 E 1060
>RPOB_AMBTC (P60282) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1078 Score = 67.0 bits (162), Expect = 2e-11 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 832 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYR 891 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 TPF A+ +++ +L++ G + +G+TG + + G Sbjct: 892 ITPFDERYEQEASRKLVFPELYEASKRTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIG 951 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 ++ +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 952 KSYMLKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 997
>RPOB_GLUOX (Q5FTX7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1390 Score = 67.0 bits (162), Expect = 2e-11 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F A++ I E L K G ++ G +++G+TG+ + G + +L H+ +DK Sbjct: 1229 ATPVFDGASIPDIEEMLEKAGVNKSGQSQLIDGRTGEPFERQTTVGYIYMLKLHHLVDDK 1288 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1289 IHARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1320 Score = 38.1 bits (87), Expect = 0.012 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGVV + E+ PF G DIV+NP P+R GQ Sbjct: 1115 HGNKGVVSRVVPVEDMPFLENGQAVDIVLNPLGVPSRMNIGQ 1156
>RPOB_PROMT (Q46J22) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1095 Score = 66.6 bits (161), Expect = 3e-11 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +E+ P+ G DI +NP P+R GQ Sbjct: 830 HGNKGIISRILPREDMPYLPDGTPVDICLNPLGVPSRMNVGQVFELLMGWAASNLDCRVK 889 Query: 185 ATPFTTATVEVISEQ-----LHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF +S Q L K G G + +G+TG+ + G Sbjct: 890 IVPFDEMYGPEMSNQTVQAYLKKAAKQPGKSWVYNPKDPGKLLLKDGRTGEPFDQPVAVG 949 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +L+H+ +DK+ R+TGP +T+QP+ + + GG + GEME Sbjct: 950 YAHFLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEME 995
>RPOB_TROWT (Q93GF2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1157 Score = 66.6 bits (161), Expect = 3e-11 Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 28/179 (15%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXX-------- 160 HG KGV+ + E+ PF G DI++NP P R GQ Sbjct: 879 HGNKGVISKILPVEDMPFMADGTPVDIILNPLGVPARMNFGQVLETHLGWISKQGWKIEG 938 Query: 161 ----XXXXXXRYATPFTTATVEV--------ISEQLHKLGFSRGGVESV--------LNG 280 R A P + + V I+ + +R G +V +G Sbjct: 939 DPDWAKDIRVREAQPDSRVSSPVFDGISEGEITGLFSSVFPNRDGERAVGSDGKAILYDG 998 Query: 281 QTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 +TG+ I G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FGEME Sbjct: 999 RTGEPFPEPISVGYMYVLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEME 1057
>RPOB_TROW8 (P59642) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1157 Score = 66.6 bits (161), Expect = 3e-11 Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 28/179 (15%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXX-------- 160 HG KGV+ + E+ PF G DI++NP P R GQ Sbjct: 879 HGNKGVISKILPVEDMPFMADGTPVDIILNPLGVPARMNFGQVLETHLGWISKQGWKIEG 938 Query: 161 ----XXXXXXRYATPFTTATVEV--------ISEQLHKLGFSRGGVESV--------LNG 280 R A P + + V I+ + +R G +V +G Sbjct: 939 DPDWAKDIRVREAQPDSRVSSPVFDGISEGEITGLFSSVFPNRDGERAVGSDGKAILYDG 998 Query: 281 QTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 +TG+ I G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +FGEME Sbjct: 999 RTGEPFPEPISVGYMYVLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEME 1057
>RPOB2_MYCSM (P60281) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1169 Score = 66.6 bits (161), Expect = 3e-11 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 33/184 (17%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXR- 181 HG KGV+G + E+ PF G DI++N H P R GQ Sbjct: 880 HGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDV 939 Query: 182 ---------------YATPF--TTATVEVISEQLHKLGFSRG---------------GVE 265 Y+ P T AT Q +L G G Sbjct: 940 AAGVPDWASKLPEELYSAPADSTVATPVFDGAQEGELAGLLGSTLPNRDGEVMVDADGKS 999 Query: 266 SVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 445 ++ +G++G+ + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +F Sbjct: 1000 TLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRF 1059 Query: 446 GEME 457 GEME Sbjct: 1060 GEME 1063
>RPOB_PHAAO (Q3BAP8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1091 Score = 66.2 bits (160), Expect = 4e-11 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + S+++ P+ G D+V NP P+R GQ Sbjct: 845 HGNKGIISKILSRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYR 904 Query: 185 ATPFTTATVEVISEQLHKLGFSR------------------GGVESVLNGQTGKRMQSLI 310 PF + E KL FS G + +G+TG + + Sbjct: 905 IGPFDERYEQ---EASRKLVFSELYEASKKTKNPWVFEPEYPGKSRIFDGRTGDLFEQPV 961 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G ++ +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 962 LIGKSYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 1010
>RPOB_BIFLO (Q8G514) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1187 Score = 66.2 bits (160), Expect = 4e-11 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 34/185 (18%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXX------ 166 HG KG + + +E+ PF G DI++NP P+R GQ Sbjct: 890 HGNKGCISRILPEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHSGWDISL 949 Query: 167 ---------------XXXXRYATPFTTATVEVISEQLHKLGFSR-------------GGV 262 TP T + + ++ K S G Sbjct: 950 DPNLEAEWKKLIPSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGK 1009 Query: 263 ESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVK 442 ++ +G+TG+ I G + +L H+ +DK+ R+TGP +T+QP+ + +FGG + Sbjct: 1010 ATLFDGRTGEPYTKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQR 1069 Query: 443 FGEME 457 FGEME Sbjct: 1070 FGEME 1074
>RPOB_LACSA (Q56P13) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1060 Score = 65.9 bits (159), Expect = 5e-11 Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 18/169 (10%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 814 HGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYR 873 Query: 185 ATPFTTATVEVISEQLHKLGFSR------------------GGVESVLNGQTGKRMQSLI 310 PF + E KL FS G + +G+TG + + Sbjct: 874 IAPFDERYEQ---EASRKLVFSELYEASKQTVNPWIFEPESPGKSRIFDGRTGDPFEQPV 930 Query: 311 FAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G + +LIH +DK+ R++G LT+QP+ R + GG + GEME Sbjct: 931 IIGKPYILKLIHQVDDKIHGRSSGRYSRLTQQPLKGRAKKGGQRVGEME 979
>RPOB_AQUAE (O67762) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1468 Score = 65.9 bits (159), Expect = 5e-11 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F A + I E L K G G ++ +G+TG+ + G +LIHM +DK Sbjct: 1293 ATPAFEGAEEDAIKELLKKAGLPENGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDK 1352 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R TGP +T+QP+ R +FGG + GEME Sbjct: 1353 IHARATGPYSLVTQQPLGGRAQFGGQRLGEME 1384 Score = 38.9 bits (89), Expect = 0.007 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + E+ PF G DIV+NP P+R GQ Sbjct: 1174 HGNKGVISVVLPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQ 1215
>RPOB_CUCSA (Q4VZP1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1071 Score = 65.9 bits (159), Expect = 5e-11 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 16/167 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + +E+ P+ G D+V NP P+R GQ Sbjct: 824 HGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG-----------GVESVLNGQTGKRMQSLIFA 316 PF A+ +++ +L++ G + +G+TG + + Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTAKSPWVFEPEYPGKSRIFDGRTGNPFEQPVII 943 Query: 317 GPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 G + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 GKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 990
>RPOB_PANGI (Q68S14) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1071 Score = 65.5 bits (158), Expect = 7e-11 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P R GQ Sbjct: 825 HGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPPRMNVGQIFECSLGLAGGLLDRHYR 884 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G G + +G+TG + + G Sbjct: 885 IAPFDERYEQEASRKLVFSELYEAGKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIG 944 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 945 KPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 990
>RPOB_DECAR (Q47JB0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1427 Score = 65.5 bits (158), Expect = 7e-11 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Frame = +2 Query: 182 YATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAED 358 +ATP F A E I L G G ++ +G+TG+ + + G Y +L H+ +D Sbjct: 1267 FATPVFDGAKEEEIKAMLAMAGMPSSGQMTLFDGRTGEAFERKVTVGYMHYLKLHHLVDD 1326 Query: 359 KVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 K+ R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1327 KMHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1359 Score = 35.4 bits (80), Expect = 0.077 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGVV + E+ P G DIV+NP P+R GQ Sbjct: 1158 HGNKGVVSRILPVEDMPHMEDGSPVDIVLNPLGVPSRMNVGQ 1199
>RPOB_THIDA (Q3SLQ6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1359 Score = 65.1 bits (157), Expect = 9e-11 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Frame = +2 Query: 182 YATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAED 358 +A+P F AT E I L G GG ++ +G+TG+ + G +L H+ +D Sbjct: 1199 FASPVFDGATEEEIRRMLALAGLPEGGQVTLYDGRTGEAFDRQVTVGYKHVLKLHHLVDD 1258 Query: 359 KVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 K+ R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1259 KMHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1291
>RPOB_EUGGR (P23579) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1082 Score = 65.1 bits (157), Expect = 9e-11 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + + PF G D+++NP P+R GQ Sbjct: 843 HGNKGIISKIVPSIDMPFLPDGTPVDMILNPLGIPSRMNVGQVFESLLNLSSLFLKERYK 902 Query: 185 ATPFTTATVEVISEQL--HKLGFSRG-------------GVESVLNGQTGKRMQSLIFAG 319 PF + S+ KL +R G + +G+ + + G Sbjct: 903 IQPFDEVQTSMNSKSFVYKKLNEARKRTKKDWLFNPNYPGKAFLYDGRNCRPFDHPVAFG 962 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIHM +DK+ R TGP +T+QP+ + + GG +FGEME Sbjct: 963 YAYILKLIHMVKDKIHARVTGPYSSVTQQPLRGKSKNGGQRFGEME 1008
>RPOB_RHOS4 (Q3J5T0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 65.1 bits (157), Expect = 9e-11 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F A +++ L + GF + G V +G+TG++ + G + +L H+ +DK Sbjct: 1215 ATPVFDGAKEPDVNDALRRAGFDQSGQSIVFDGRTGEQFARPVTVGVKYMLKLHHLVDDK 1274 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+TGP +T+QP+ + +FGG + GEME Sbjct: 1275 LHARSTGPYSLVTQQPLGGKAQFGGQRLGEME 1306 Score = 38.1 bits (87), Expect = 0.012 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + E+ PF G D+V+NP P+R GQ Sbjct: 1102 HGNKGVISKVVPIEDMPFLADGTHVDLVLNPLGVPSRMNVGQ 1143
>RPOB_SILPO (Q5LMQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 65.1 bits (157), Expect = 9e-11 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F A +++ L + GF G + +G+TG++ + G + +L H+ +DK Sbjct: 1215 ATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTVGIKYLLKLHHLVDDK 1274 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1275 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1306 Score = 37.0 bits (84), Expect = 0.026 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + E+ PF G D +NP P+R GQ Sbjct: 1102 HGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMNVGQ 1143
>RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1469 Score = 65.1 bits (157), Expect = 9e-11 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F A + + E L K G G ++ +G+TG+ + G +LIHM +DK Sbjct: 1294 ATPAFEGADEKAVKELLKKAGLPESGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDK 1353 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R TGP +T+QP+ R +FGG + GEME Sbjct: 1354 IHARATGPYSLVTQQPLGGRAQFGGQRLGEME 1385 Score = 38.9 bits (89), Expect = 0.007 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + E+ PF G DIV+NP P+R GQ Sbjct: 1175 HGNKGVISVVLPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQ 1216
>RPOB_TOBAC (P06271) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 824 HGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 884 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 KPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989
>RPOB_SOLTU (Q2VEI4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 824 HGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 884 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 KPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989
>RPOB_NICTO (Q33C46) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 824 HGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 884 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 KPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989
>RPOB_NICSY (Q3C1G7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 824 HGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 884 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 KPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989
>RPOB_LOTJA (Q9BBS9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 64.7 bits (156), Expect = 1e-10 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + ++++ P+ G D+V NP P+R GQ Sbjct: 824 HGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 884 IAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEME 989
>RPOB_ATRBE (Q8S8X9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 824 HGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 884 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 KPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989
>RPOB_CALFE (Q7YJX8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1060 Score = 64.7 bits (156), Expect = 1e-10 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG+V + +++ P+ G D+V NP P+R GQ Sbjct: 814 HGNKGIVSKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQMFECSLGLAGYLLDKHYR 873 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSR----------GGVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L+ G + +G+TG + + G Sbjct: 874 IAPFDERYEQEASRKLVFPELYSASKQTVNPWVFEPEYPGKSRIFDGRTGDPFEQPVIIG 933 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 ++ +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 934 KSYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 979
>RPOB_SINAL (P46818) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1078 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 832 HGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYR 891 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 892 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIG 951 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 952 KPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEME 997
>RPOB_ASTLO (P27059) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1076 Score = 64.3 bits (155), Expect = 2e-10 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KGV+ + + P+ G DI++NP P+R GQ Sbjct: 836 HGNKGVISKIIPIVDMPYLPDGTPIDIILNPLGIPSRMNVGQIYECLLNLSAINLKERYK 895 Query: 185 ATPFTTATVEVISEQL--HKLGFSRG-------------GVESVLNGQTGKRMQSLIFAG 319 PF + SE L KL SR G + NG+ GK + I G Sbjct: 896 IQPFDEYQYKNNSEILIYKKLNQSRKKTKKEWLFNPNNPGKTILFNGKNGKPFKQTISFG 955 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 ++ +L+H+AE+K+ + + +QPV + + GG +FGEME Sbjct: 956 YSYILKLMHIAEEKIHAKTISNYSSIIKQPVKGKSKNGGQRFGEME 1001
>RPOB_TROWH (P59643) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1157 Score = 64.3 bits (155), Expect = 2e-10 Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 28/179 (15%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXX-------- 160 HG KGV+ + E+ PF G DI++NP P R GQ Sbjct: 879 HGNKGVISKILPVEDMPFMADGTPVDIILNPLGVPARMNFGQVLETHLGWISKQGWKIEG 938 Query: 161 ----XXXXXXRYATPFTTATVEV--------ISEQLHKLGFSRGGVESV--------LNG 280 R A P + + V I+ + +R G +V +G Sbjct: 939 DPDWAKDIRVREAQPDSRVSSPVFDGISEGEITGLFSSVFPNRDGERAVGSDGKAILYDG 998 Query: 281 QTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 +TG+ I G + +L H+ +DK+ R+TGP + +QP+ + +FGG +FGEME Sbjct: 999 RTGEPFPEPISVGYMYVLKLHHLVDDKIHARSTGPYSMIIQQPLGGKAQFGGQRFGEME 1057
>RPOB_ZYMMO (Q5NPK5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1401 Score = 64.3 bits (155), Expect = 2e-10 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F A E ISE L+ G G + +G+TG++ + G + +L H+ +DK Sbjct: 1227 ATPVFDGAKPEDISEMLNLAGLDDSGQVELYDGRTGEQFDRKVTVGYIYMLKLHHLVDDK 1286 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1287 IHARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1318 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + E+ PF G DIV+NP P+R GQ Sbjct: 1106 HGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVPSRMNIGQ 1147
>RPOB_EUCGG (Q49L06) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1072 Score = 63.9 bits (154), Expect = 2e-10 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 826 HGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYR 885 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 886 IAPFDERYEQEASRKLVFSELYEASQQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIG 945 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 946 KPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 991
>RPOB_RICPR (O52271) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1374 Score = 63.9 bits (154), Expect = 2e-10 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Frame = +2 Query: 182 YATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAED 358 +ATP F A V+ + + L G G +++G+TG+ L+ G + +L H+ ++ Sbjct: 1211 FATPVFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTVGHKYLLKLHHLVDN 1270 Query: 359 KVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 K+ R+ GP +T+QP+ + FGG +FGEME Sbjct: 1271 KIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEME 1303 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/42 (45%), Positives = 25/42 (59%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + +E+ PF G V DIV+NP P+R GQ Sbjct: 1100 HGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQ 1141
>RPOB_RHOPA (Q6N4R9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1374 Score = 63.9 bits (154), Expect = 2e-10 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATPFTTATVEVISEQLHKL-GFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP E E++ KL GF G +V +G+TG + + G + +L H+ +DK Sbjct: 1203 ATPVFDGAKEADIEEMLKLAGFDASGQSTVYDGRTGDQFDRRVTVGYIYMLKLHHLVDDK 1262 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1263 IHARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1294 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGVV + E+ PF G DIV+NP P+R GQ Sbjct: 1093 HGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQ 1134
>RPOB_RICMA (Q9RH43) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1373 Score = 63.9 bits (154), Expect = 2e-10 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Frame = +2 Query: 182 YATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAED 358 +ATP F A V+ + + L G G +++G+TG+ L+ G + +L H+ ++ Sbjct: 1211 FATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDN 1270 Query: 359 KVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 K+ R+ GP +T+QP+ + FGG +FGEME Sbjct: 1271 KIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEME 1303 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/42 (45%), Positives = 25/42 (59%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + +E+ PF G V DIV+NP P+R GQ Sbjct: 1100 HGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQ 1141
>RPOB_RICFE (Q4UKD4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1373 Score = 63.9 bits (154), Expect = 2e-10 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Frame = +2 Query: 182 YATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAED 358 +ATP F A V+ + + L G G +++G+TG+ L+ G + +L H+ ++ Sbjct: 1211 FATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDN 1270 Query: 359 KVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 K+ R+ GP +T+QP+ + FGG +FGEME Sbjct: 1271 KIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEME 1303 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/42 (45%), Positives = 25/42 (59%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + +E+ PF G V DIV+NP P+R GQ Sbjct: 1100 HGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQ 1141
>RPOB_RICCN (Q9RH41) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1373 Score = 63.9 bits (154), Expect = 2e-10 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Frame = +2 Query: 182 YATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAED 358 +ATP F A V+ + + L G G +++G+TG+ L+ G + +L H+ ++ Sbjct: 1211 FATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDN 1270 Query: 359 KVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 K+ R+ GP +T+QP+ + FGG +FGEME Sbjct: 1271 KIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEME 1303 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/42 (45%), Positives = 25/42 (59%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + +E+ PF G V DIV+NP P+R GQ Sbjct: 1100 HGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQ 1141
>RPOB_SILLA (Q589C0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 63.5 bits (153), Expect = 3e-10 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 824 HGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 884 IAPFDERYEQEASRKLVFSELYQASKQTSEPWIFEPEYPGKSRIFDGRTGDLFEQPVIIG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989
>RPOB_MYCTU (P0A680) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 63.5 bits (153), Expect = 3e-10 Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 33/184 (17%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXX-------XXXXXXXXX 163 HG KGV+G + E+ PF G DI++N H P R GQ Sbjct: 889 HGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDA 948 Query: 164 XXXXXRYATPFTTATVEVISEQLHKLGFSRGGVESVLNG--------------------- 280 +A +E + G E+ L G Sbjct: 949 AKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKA 1008 Query: 281 -----QTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 445 ++G+ + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +F Sbjct: 1009 MLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRF 1068 Query: 446 GEME 457 GEME Sbjct: 1069 GEME 1072
>RPOB_MYCBO (P0A681) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 63.5 bits (153), Expect = 3e-10 Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 33/184 (17%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXX-------XXXXXXXXX 163 HG KGV+G + E+ PF G DI++N H P R GQ Sbjct: 889 HGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDA 948 Query: 164 XXXXXRYATPFTTATVEVISEQLHKLGFSRGGVESVLNG--------------------- 280 +A +E + G E+ L G Sbjct: 949 AKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKA 1008 Query: 281 -----QTGKRMQSLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 445 ++G+ + G + +L H+ +DK+ R+TGP +T+QP+ + +FGG +F Sbjct: 1009 MLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRF 1068 Query: 446 GEME 457 GEME Sbjct: 1069 GEME 1072
>RPOB_OENHO (Q9MTM5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1072 Score = 63.5 bits (153), Expect = 3e-10 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D+V NP P+R GQ Sbjct: 826 HGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGFAGDLLERHYR 885 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 886 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRLFDGRTGDPFEQPVIIG 945 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 946 KPYILKLIHQVDDKIHGRSSGHYARVTQQPLRGRAKQGGQRVGEME 991
>RPOB_SPIOL (P11703) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 63.2 bits (152), Expect = 3e-10 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQXXXXXXXXXXXXXXXXRY 184 HG KG++ + +++ P+ G D++ NP P+R GQ Sbjct: 824 HGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYR 883 Query: 185 ATPFTT-----ATVEVISEQLHKLGFSRG----------GVESVLNGQTGKRMQSLIFAG 319 PF A+ +++ +L++ G + +G+TG + + G Sbjct: 884 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIG 943 Query: 320 PNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + +LIH +DK+ R++G +T+QP+ R + GG + GEME Sbjct: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989
>RPOB_AZOSE (Q5P339) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 62.4 bits (150), Expect = 6e-10 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Frame = +2 Query: 182 YATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAED 358 +ATP F A E I G GG ++ +G+TG + G +L H+ +D Sbjct: 1217 FATPVFDGAKEEEIEAMFELAGLQPGGQVTLYDGRTGDAFDRQVTVGYKHVLKLHHLVDD 1276 Query: 359 KVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 K+ R+TGP +T+QP+ + +FGG +FGEME Sbjct: 1277 KMHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1309 Score = 37.0 bits (84), Expect = 0.026 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGVV + E+ P G DIV+NP P+R GQ Sbjct: 1108 HGNKGVVSRIVPIEDMPHMADGTPVDIVLNPLGVPSRMNIGQ 1149
>RPOB_RHIME (Q92QH7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1380 Score = 62.4 bits (150), Expect = 6e-10 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATPFTTATVEV-ISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP VE ++E L + G G ++ +G+TG+ + G + +L H+ +DK Sbjct: 1205 ATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGETFDRQVTVGYIYMLKLNHLVDDK 1264 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1265 IHARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1296 Score = 37.7 bits (86), Expect = 0.015 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGVV + E+ PF G D+V+NP P+R GQ Sbjct: 1092 HGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQ 1133
>RPOB_PSEHT (Q3ILP9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1341 Score = 62.4 bits (150), Expect = 6e-10 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F A I + L G+ R G ++ +G+TG + + + G + +L H+ +DK Sbjct: 1182 ATPAFDGAKENEIKDMLELAGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDK 1241 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+TG +T+QP+ + +FGG +FGEME Sbjct: 1242 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1273 Score = 38.1 bits (87), Expect = 0.012 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + E+ P+ +G DIV+NP P+R GQ Sbjct: 1070 HGNKGVISTIVPVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQ 1111
>RPOB_DESDG (Q30X05) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1375 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/88 (32%), Positives = 50/88 (56%) Frame = +2 Query: 194 FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDKVKFR 373 F AT E I + + G + G + +G+TG R + + G + +L H+ ++K+ R Sbjct: 1201 FDGATEEQIWSWMEQAGLANDGKTELYDGRTGVRFHNRVTTGVMYILKLHHLVDEKIHAR 1260 Query: 374 NTGPVHPLTRQPVADRKRFGGVKFGEME 457 +TGP +T+QP+ + +FGG + GEME Sbjct: 1261 STGPYSLVTQQPLGGKAQFGGQRLGEME 1288 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/42 (47%), Positives = 24/42 (57%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGVV + QE+ PF G DIV+NP P+R GQ Sbjct: 1087 HGNKGVVSCILPQEDMPFFADGRPVDIVLNPLGVPSRMNIGQ 1128
>RPOB_YERPS (Q66FQ2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 61.6 bits (148), Expect = 1e-09 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F AT + I E L G G ++ +G+TG++ + + G + +L H+ +DK Sbjct: 1183 ATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDK 1242 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+TG +T+QP+ + +FGG +FGEME Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 Score = 37.4 bits (85), Expect = 0.020 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + E+ P+ G DIV+NP P+R GQ Sbjct: 1070 HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111
>RPOB_YERPE (Q8ZAP5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 61.6 bits (148), Expect = 1e-09 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATP-FTTATVEVISEQLHKLGFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP F AT + I E L G G ++ +G+TG++ + + G + +L H+ +DK Sbjct: 1183 ATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDK 1242 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+TG +T+QP+ + +FGG +FGEME Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 Score = 37.4 bits (85), Expect = 0.020 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGV+ + E+ P+ G DIV+NP P+R GQ Sbjct: 1070 HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111
>RPOB_NITWN (Q3SSY0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1380 Score = 61.2 bits (147), Expect = 1e-09 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Frame = +2 Query: 185 ATPFTTATVEVISEQLHKL-GFSRGGVESVLNGQTGKRMQSLIFAGPNFYQRLIHMAEDK 361 ATP E EQ+ +L G + G +V +G+TG + G + +L H+ +DK Sbjct: 1208 ATPVFDGAKEADIEQMLELAGMDKSGQSTVYDGRTGDPFDRKVTVGYIYMLKLHHLVDDK 1267 Query: 362 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 457 + R+ GP +T+QP+ + +FGG +FGEME Sbjct: 1268 IHARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1299 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = +2 Query: 5 HGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 130 HG KGVV + E+ PF G DIV+NP P+R GQ Sbjct: 1096 HGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQ 1137 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,275,976 Number of Sequences: 219361 Number of extensions: 1447702 Number of successful extensions: 4411 Number of sequences better than 10.0: 379 Number of HSP's better than 10.0 without gapping: 3926 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4233 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
