ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474064.1| Oryza sativa (japonica cultivar-group), predic... 343 3e-91
2dbj|AK121416.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
3dbj|AK058580.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
4emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 240 3e-60
5emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4,... 240 3e-60
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 240 3e-60
7emb|AL732339.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 240 3e-60
8gb|AY104560.1| Zea mays PCO137902 mRNA sequence 186 4e-44
9ref|XM_480298.1| Oryza sativa (japonica cultivar-group), mRNA 127 4e-26
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
11dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
12dbj|AK106914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
13gb|DQ011649.1| Lycopersicon esculentum RNA polymerase IV second ... 96 1e-16
14gb|DQ011642.1| Antirrhinum majus RNA polymerase IV second larges... 96 1e-16
15gb|DQ011640.1| Rhododendron macrophyllum RNA polymerase IV secon... 64 4e-07
16gb|AY303171.1| Solanum bulbocastanum chromosome 8 clone 177O13, ... 64 4e-07
17ref|NM_112691.1| Arabidopsis thaliana NRPD2b; DNA binding / DNA-... 56 1e-04
18gb|AY935712.1| Arabidopsis thaliana RNA polymerase IV second-lar... 56 1e-04
19dbj|AB020749.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 56 1e-04
20ref|NM_113282.2| Arabidopsis thaliana NRPD2a; DNA binding / DNA-... 48 0.026
21gb|AY935711.1| Arabidopsis thaliana RNA polymerase IV second-lar... 48 0.026
22emb|CR729325.2|CNS0GPOZ Tetraodon nigroviridis full-length cDNA 48 0.026
23gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, comp... 48 0.026
24gb|U86941.1|MCU86941 Molluscum contagiosum virus subtype 1 clone... 48 0.026
25dbj|AK176111.1| Arabidopsis thaliana mRNA for putative DNA-direc... 48 0.026
26gb|AY862891.1| Arabidopsis thaliana polymerase IV second largest... 48 0.026
27dbj|AP000377.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 48 0.026
28ref|XM_724581.1| Plasmodium yoelii yoelii str. 17XNL DNA-directe... 46 0.10
29ref|XM_675011.1| Plasmodium berghei strain ANKA hypothetical pro... 46 0.10
30emb|AL160270.19| Human DNA sequence from clone RP11-296L22 on ch... 46 0.10
31gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section ... 46 0.10
32gb|DQ377805.1|DQ377804S2 Squirrelpox virus 1296/99, partial genome 42 1.6
33gb|DQ020659.1| Chlamydomonas reinhardtii RNA polymerase IV secon... 42 1.6
34ref|XM_740201.1| Plasmodium chabaudi chabaudi DNA-directed RNA p... 42 1.6
35dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 42 1.6
36emb|AL672029.7| Mouse DNA sequence from clone RP23-416F22 on chr... 42 1.6
37gb|AC167816.4| Mus musculus BAC clone RP23-317F20 from chromosom... 40 6.5
38gb|AC131521.5| Rattus norvegicus 2 BAC CH230-275M7 (Children's H... 40 6.5
39ref|XM_720301.1| Plasmodium yoelii yoelii str. 17XNL DNA-directe... 40 6.5
40emb|AL591687.9| Human DNA sequence from clone RP11-569M12 on chr... 40 6.5
41emb|AL359846.11| Human DNA sequence from clone RP11-413C10 on ch... 40 6.5
42emb|AL158158.14| Human DNA sequence from clone RP11-427L11 on ch... 40 6.5
43emb|AL161734.12| Human DNA sequence from clone RP11-33M22 on chr... 40 6.5
44emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encepha... 40 6.5
45gb|AC153538.10| Mus musculus 10 BAC RP23-136I11 (Roswell Park Ca... 40 6.5
46emb|CR759967.5| Zebrafish DNA sequence from clone DKEY-94P13 in ... 40 6.5
47dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 6.5
48dbj|AB076248.1| Mus musculus DNA, BAC clone:No.251,465 40 6.5
49gb|AC156504.5| Mus musculus 10 BAC RP24-315I19 (Roswell Park Can... 40 6.5
50gb|AY217093.1| Tick-borne encephalitis virus strain MDJ-01 nonfu... 40 6.5
51gb|AF249962.1|AF249962 Reinhardtia gracilis malate synthase gene... 40 6.5
52gb|AC000029.17| Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 ... 40 6.5
53gb|AC093761.3| Homo sapiens BAC clone RP11-89I4 from 4, complete... 40 6.5
54gb|AY182009.1| Tick-borne encephalitis virus strain Senzhang pol... 40 6.5
55dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 6.5
56gb|AF223391.1|AF239258S3 Homo sapiens calcium channel alpha1E su... 40 6.5
57dbj|AP002802.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.5
58emb|AL611963.24| Mouse DNA sequence from clone RP23-79J18 on chr... 40 6.5
59gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 6.5
60dbj|AB073428.1| Ciona savignyi mRNA for spondin, complete cds 40 6.5 
>ref|XM_474064.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4032

 Score =  343 bits (173), Expect = 3e-91
 Identities = 394/468 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1    catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
            ||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 3294 catgcatggccagaaaggtgtcgttggttttctagaatctcaggagaatttcccatttac 3353

                                                                        
Query: 61   ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
             | |||||||||||| ||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 3354 ttaccaaggaatagtaccagatattgtgataaatccacatgcatttcctacccgtcaaac 3413

                                                                        
Query: 121  tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggtaaaatcag 180
            |||||||||||| |||||||||||||||||||| ||||| || || ||||||| ||| ||
Sbjct: 3414 tccaggccagcttcttgaagctgctttggggaaaggaattgccctcggtggtacaatgag 3473

                                                                        
Query: 181  atatgcaacaccattcaccacagcaacagttgaagtgatctcggaacagttgcacaagct 240
            |||||| ||||||||||| |||||| |  |||| |||||| | || || || ||||||  
Sbjct: 3474 atatgctacaccattcacaacagcatcgtttgatgtgatcacagaccaattacacaaggc 3533

                                                                        
Query: 241  tgggttttcaagagggggagttgaaagtgttctcaatggccaaaccggcaaaaggatgca 300
            ||| ||||||||| |||||| ||||||||||||||||||||  || ||  ||||||||||
Sbjct: 3534 tggattttcaagatggggagctgaaagtgttctcaatggccggactggtgaaaggatgca 3593

                                                                        
Query: 301  gtcactgatcttcgcgggccccaacttctaccagaggctgatccacatggctgaggacaa 360
             ||| |||| |||  ||| || |  || |||||||||||||| |||||||| || || ||
Sbjct: 3594 ctcattgattttcatgggtcctactttttaccagaggctgatacacatggcagaagataa 3653

                                                                        
Query: 361  ggtgaagttccggaacacggggccggtgcacccgctcacgaggcagccggtcgcggaccg 420
            ||| |||||| ||||||||||||| |||||||| || ||  |||| || || || ||| |
Sbjct: 3654 ggtcaagttcaggaacacggggccagtgcaccccctaacacggcaacctgttgctgacag 3713

                                                            
Query: 421  caagaggttcggcggngtcaagtttggggagatggagcgcgactgcct 468
             |||||||| || || || |||||||| || |||||||| ||||||||
Sbjct: 3714 gaagaggtttgggggagtgaagtttggagaaatggagcgtgactgcct 3761
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>dbj|AK121416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133G05, full
            insert sequence
          Length = 4236

 Score =  343 bits (173), Expect = 3e-91
 Identities = 394/468 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1    catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
            ||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 3163 catgcatggccagaaaggtgtcgttggttttctagaatctcaggagaatttcccatttac 3222

                                                                        
Query: 61   ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
             | |||||||||||| ||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 3223 ttaccaaggaatagtaccagatattgtgataaatccacatgcatttcctacccgtcaaac 3282

                                                                        
Query: 121  tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggtaaaatcag 180
            |||||||||||| |||||||||||||||||||| ||||| || || ||||||| ||| ||
Sbjct: 3283 tccaggccagcttcttgaagctgctttggggaaaggaattgccctcggtggtacaatgag 3342

                                                                        
Query: 181  atatgcaacaccattcaccacagcaacagttgaagtgatctcggaacagttgcacaagct 240
            |||||| ||||||||||| |||||| |  |||| |||||| | || || || ||||||  
Sbjct: 3343 atatgctacaccattcacaacagcatcgtttgatgtgatcacagaccaattacacaaggc 3402

                                                                        
Query: 241  tgggttttcaagagggggagttgaaagtgttctcaatggccaaaccggcaaaaggatgca 300
            ||| ||||||||| |||||| ||||||||||||||||||||  || ||  ||||||||||
Sbjct: 3403 tggattttcaagatggggagctgaaagtgttctcaatggccggactggtgaaaggatgca 3462

                                                                        
Query: 301  gtcactgatcttcgcgggccccaacttctaccagaggctgatccacatggctgaggacaa 360
             ||| |||| |||  ||| || |  || |||||||||||||| |||||||| || || ||
Sbjct: 3463 ctcattgattttcatgggtcctactttttaccagaggctgatacacatggcagaagataa 3522

                                                                        
Query: 361  ggtgaagttccggaacacggggccggtgcacccgctcacgaggcagccggtcgcggaccg 420
            ||| |||||| ||||||||||||| |||||||| || ||  |||| || || || ||| |
Sbjct: 3523 ggtcaagttcaggaacacggggccagtgcaccccctaacacggcaacctgttgctgacag 3582

                                                            
Query: 421  caagaggttcggcggngtcaagtttggggagatggagcgcgactgcct 468
             |||||||| || || || |||||||| || |||||||| ||||||||
Sbjct: 3583 gaagaggtttgggggagtgaagtttggagaaatggagcgtgactgcct 3630
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>dbj|AK058580.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F06, full
            insert sequence
          Length = 1908

 Score =  343 bits (173), Expect = 3e-91
 Identities = 394/468 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1    catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
            ||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 831  catgcatggccagaaaggtgtcgttggttttctagaatctcaggagaatttcccatttac 890

                                                                        
Query: 61   ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
             | |||||||||||| ||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 891  ttaccaaggaatagtaccagatattgtgataaatccacatgcatttcctacccgtcaaac 950

                                                                        
Query: 121  tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggtaaaatcag 180
            |||||||||||| |||||||||||||||||||| ||||| || || ||||||| ||| ||
Sbjct: 951  tccaggccagcttcttgaagctgctttggggaaaggaattgccctcggtggtacaatgag 1010

                                                                        
Query: 181  atatgcaacaccattcaccacagcaacagttgaagtgatctcggaacagttgcacaagct 240
            |||||| ||||||||||| |||||| |  |||| |||||| | || || || ||||||  
Sbjct: 1011 atatgctacaccattcacaacagcatcgtttgatgtgatcacagaccaattacacaaggc 1070

                                                                        
Query: 241  tgggttttcaagagggggagttgaaagtgttctcaatggccaaaccggcaaaaggatgca 300
            ||| ||||||||| |||||| ||||||||||||||||||||  || ||  ||||||||||
Sbjct: 1071 tggattttcaagatggggagctgaaagtgttctcaatggccggactggtgaaaggatgca 1130

                                                                        
Query: 301  gtcactgatcttcgcgggccccaacttctaccagaggctgatccacatggctgaggacaa 360
             ||| |||| |||  ||| || |  || |||||||||||||| |||||||| || || ||
Sbjct: 1131 ctcattgattttcatgggtcctactttttaccagaggctgatacacatggcagaagataa 1190

                                                                        
Query: 361  ggtgaagttccggaacacggggccggtgcacccgctcacgaggcagccggtcgcggaccg 420
            ||| |||||| ||||||||||||| |||||||| || ||  |||| || || || ||| |
Sbjct: 1191 ggtcaagttcaggaacacggggccagtgcaccccctaacacggcaacctgttgctgacag 1250

                                                            
Query: 421  caagaggttcggcggngtcaagtttggggagatggagcgcgactgcct 468
             |||||||| || || || |||||||| || |||||||| ||||||||
Sbjct: 1251 gaagaggtttgggggagtgaagtttggagaaatggagcgtgactgcct 1298
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>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
             complete sequence
          Length = 150416

 Score =  240 bits (121), Expect = 3e-60
 Identities = 184/205 (89%)
 Strand = Plus / Plus

                                                                         
Query: 1     catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
             ||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 10804 catgcatggccagaaaggtgtcgttggttttctagaatctcaggagaatttcccatttac 10863

                                                                         
Query: 61    ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
              | |||||||||||| ||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 10864 ttaccaaggaatagtaccagatattgtgataaatccacatgcatttcctacccgtcaaac 10923

                                                                         
Query: 121   tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggtaaaatcag 180
             |||||||||||| |||||||||||||||||||| ||||| || || ||||||| ||| ||
Sbjct: 10924 tccaggccagcttcttgaagctgctttggggaaaggaattgccctcggtggtacaatgag 10983

                                      
Query: 181   atatgcaacaccattcaccacagca 205
             |||||| ||||||||||| ||||||
Sbjct: 10984 atatgctacaccattcacaacagca 11008



 Score =  121 bits (61), Expect = 2e-24
 Identities = 183/224 (81%)
 Strand = Plus / Plus

                                                                         
Query: 245   ttttcaagagggggagttgaaagtgttctcaatggccaaaccggcaaaaggatgcagtca 304
             ||||||||| |||||| ||||||||||||||||||||  || ||  |||||||||| |||
Sbjct: 11434 ttttcaagatggggagctgaaagtgttctcaatggccggactggtgaaaggatgcactca 11493

                                                                         
Query: 305   ctgatcttcgcgggccccaacttctaccagaggctgatccacatggctgaggacaaggtg 364
              |||| |||  ||| || |  || |||||||||||||| |||||||| || || ||||| 
Sbjct: 11494 ttgattttcatgggtcctactttttaccagaggctgatacacatggcagaagataaggtc 11553

                                                                         
Query: 365   aagttccggaacacggggccggtgcacccgctcacgaggcagccggtcgcggaccgcaag 424
             |||||| ||||||||||||| |||||||| || ||  |||| || || || ||| | |||
Sbjct: 11554 aagttcaggaacacggggccagtgcaccccctaacacggcaacctgttgctgacaggaag 11613

                                                         
Query: 425   aggttcggcggngtcaagtttggggagatggagcgcgactgcct 468
             ||||| || || || |||||||| || |||||||| ||||||||
Sbjct: 11614 aggtttgggggagtgaagtttggagaaatggagcgtgactgcct 11657
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>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
             complete sequence
          Length = 126659

 Score =  240 bits (121), Expect = 3e-60
 Identities = 184/205 (89%)
 Strand = Plus / Plus

                                                                         
Query: 1     catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
             ||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 46390 catgcatggccagaaaggtgtcgttggttttctagaatctcaggagaatttcccatttac 46449

                                                                         
Query: 61    ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
              | |||||||||||| ||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 46450 ttaccaaggaatagtaccagatattgtgataaatccacatgcatttcctacccgtcaaac 46509

                                                                         
Query: 121   tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggtaaaatcag 180
             |||||||||||| |||||||||||||||||||| ||||| || || ||||||| ||| ||
Sbjct: 46510 tccaggccagcttcttgaagctgctttggggaaaggaattgccctcggtggtacaatgag 46569

                                      
Query: 181   atatgcaacaccattcaccacagca 205
             |||||| ||||||||||| ||||||
Sbjct: 46570 atatgctacaccattcacaacagca 46594



 Score =  121 bits (61), Expect = 2e-24
 Identities = 183/224 (81%)
 Strand = Plus / Plus

                                                                         
Query: 245   ttttcaagagggggagttgaaagtgttctcaatggccaaaccggcaaaaggatgcagtca 304
             ||||||||| |||||| ||||||||||||||||||||  || ||  |||||||||| |||
Sbjct: 47020 ttttcaagatggggagctgaaagtgttctcaatggccggactggtgaaaggatgcactca 47079

                                                                         
Query: 305   ctgatcttcgcgggccccaacttctaccagaggctgatccacatggctgaggacaaggtg 364
              |||| |||  ||| || |  || |||||||||||||| |||||||| || || ||||| 
Sbjct: 47080 ttgattttcatgggtcctactttttaccagaggctgatacacatggcagaagataaggtc 47139

                                                                         
Query: 365   aagttccggaacacggggccggtgcacccgctcacgaggcagccggtcgcggaccgcaag 424
             |||||| ||||||||||||| |||||||| || ||  |||| || || || ||| | |||
Sbjct: 47140 aagttcaggaacacggggccagtgcaccccctaacacggcaacctgttgctgacaggaag 47199

                                                         
Query: 425   aggttcggcggngtcaagtttggggagatggagcgcgactgcct 468
             ||||| || || || |||||||| || |||||||| ||||||||
Sbjct: 47200 aggtttgggggagtgaagtttggagaaatggagcgtgactgcct 47243
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  240 bits (121), Expect = 3e-60
 Identities = 184/205 (89%)
 Strand = Plus / Plus

                                                                            
Query: 1        catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
                ||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 32651369 catgcatggccagaaaggtgtcgttggttttctagaatctcaggagaatttcccatttac 32651428

                                                                            
Query: 61       ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
                 | |||||||||||| ||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 32651429 ttaccaaggaatagtaccagatattgtgataaatccacatgcatttcctacccgtcaaac 32651488

                                                                            
Query: 121      tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggtaaaatcag 180
                |||||||||||| |||||||||||||||||||| ||||| || || ||||||| ||| ||
Sbjct: 32651489 tccaggccagcttcttgaagctgctttggggaaaggaattgccctcggtggtacaatgag 32651548

                                         
Query: 181      atatgcaacaccattcaccacagca 205
                |||||| ||||||||||| ||||||
Sbjct: 32651549 atatgctacaccattcacaacagca 32651573



 Score =  121 bits (61), Expect = 2e-24
 Identities = 183/224 (81%)
 Strand = Plus / Plus

                                                                            
Query: 245      ttttcaagagggggagttgaaagtgttctcaatggccaaaccggcaaaaggatgcagtca 304
                ||||||||| |||||| ||||||||||||||||||||  || ||  |||||||||| |||
Sbjct: 32651999 ttttcaagatggggagctgaaagtgttctcaatggccggactggtgaaaggatgcactca 32652058

                                                                            
Query: 305      ctgatcttcgcgggccccaacttctaccagaggctgatccacatggctgaggacaaggtg 364
                 |||| |||  ||| || |  || |||||||||||||| |||||||| || || ||||| 
Sbjct: 32652059 ttgattttcatgggtcctactttttaccagaggctgatacacatggcagaagataaggtc 32652118

                                                                            
Query: 365      aagttccggaacacggggccggtgcacccgctcacgaggcagccggtcgcggaccgcaag 424
                |||||| ||||||||||||| |||||||| || ||  |||| || || || ||| | |||
Sbjct: 32652119 aagttcaggaacacggggccagtgcaccccctaacacggcaacctgttgctgacaggaag 32652178

                                                            
Query: 425      aggttcggcggngtcaagtttggggagatggagcgcgactgcct 468
                ||||| || || || |||||||| || |||||||| ||||||||
Sbjct: 32652179 aggtttgggggagtgaagtttggagaaatggagcgtgactgcct 32652222
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>emb|AL732339.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0414F07, complete
             sequence
          Length = 50928

 Score =  240 bits (121), Expect = 3e-60
 Identities = 184/205 (89%)
 Strand = Plus / Plus

                                                                         
Query: 1     catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
             ||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 27453 catgcatggccagaaaggtgtcgttggttttctagaatctcaggagaatttcccatttac 27512

                                                                         
Query: 61    ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
              | |||||||||||| ||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 27513 ttaccaaggaatagtaccagatattgtgataaatccacatgcatttcctacccgtcaaac 27572

                                                                         
Query: 121   tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggtaaaatcag 180
             |||||||||||| |||||||||||||||||||| ||||| || || ||||||| ||| ||
Sbjct: 27573 tccaggccagcttcttgaagctgctttggggaaaggaattgccctcggtggtacaatgag 27632

                                      
Query: 181   atatgcaacaccattcaccacagca 205
             |||||| ||||||||||| ||||||
Sbjct: 27633 atatgctacaccattcacaacagca 27657



 Score =  113 bits (57), Expect = 5e-22
 Identities = 182/224 (81%)
 Strand = Plus / Plus

                                                                         
Query: 245   ttttcaagagggggagttgaaagtgttctcaatggccaaaccggcaaaaggatgcagtca 304
             ||||| ||| |||||| ||||||||||||||||||||  || ||  |||||||||| |||
Sbjct: 28083 ttttcgagatggggagctgaaagtgttctcaatggccggactggtgaaaggatgcactca 28142

                                                                         
Query: 305   ctgatcttcgcgggccccaacttctaccagaggctgatccacatggctgaggacaaggtg 364
              |||| |||  ||| || |  || |||||||||||||| |||||||| || || ||||| 
Sbjct: 28143 ttgattttcatgggtcctactttttaccagaggctgatacacatggcagaagataaggtc 28202

                                                                         
Query: 365   aagttccggaacacggggccggtgcacccgctcacgaggcagccggtcgcggaccgcaag 424
             |||||| ||||||||||||| |||||||| || ||  |||| || || || ||| | |||
Sbjct: 28203 aagttcaggaacacggggccagtgcaccccctaacacggcaacctgttgctgacaggaag 28262

                                                         
Query: 425   aggttcggcggngtcaagtttggggagatggagcgcgactgcct 468
             ||||| || || || |||||||| || |||||||| ||||||||
Sbjct: 28263 aggtttgggggagtgaagtttggagaaatggagcgtgactgcct 28306
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>gb|AY104560.1| Zea mays PCO137902 mRNA sequence
          Length = 1208

 Score =  186 bits (94), Expect = 4e-44
 Identities = 193/226 (85%)
 Strand = Plus / Plus

                                                                       
Query: 11  caaaaaggtgttgttggttttctagaatctcaggagaacttcccttttacctgccaagga 70
           |||||||||||||||||||||||||||||||| ||||||||||| |||||   | |||| 
Sbjct: 407 caaaaaggtgttgttggttttctagaatctcaagagaacttcccatttactcacgaaggt 466

                                                                       
Query: 71  atagttccagacatcgtgataaatccacacgcctttcctacccgtcaaactccaggccag 130
           ||||| || || || |||||||||||||| ||||| || || ||||||||||| || |||
Sbjct: 467 atagtcccggatattgtgataaatccacatgccttcccaacacgtcaaactcccggacag 526

                                                                       
Query: 131 ctgcttgaagctgctttggggaagggaatcgctcttggtggtaaaatcagatatgcaaca 190
           ||||||||||||||| ||||||||||||| |||      |||| ||| ||||||||||||
Sbjct: 527 ctgcttgaagctgctctggggaagggaatagcttgcaaaggtacaatgagatatgcaaca 586

                                                         
Query: 191 ccattcaccacagcaacagttgaagtgatctcggaacagttgcaca 236
           ||||||||||||||| ||||||| || ||  | |||||||||||||
Sbjct: 587 ccattcaccacagcatcagttgacgttattgcagaacagttgcaca 632



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 127/153 (83%)
 Strand = Plus / Plus

                                                                       
Query: 316 gggccccaacttctaccagaggctgatccacatggctgaggacaaggtgaagttccggaa 375
           |||||| | ||| |||||||||||||| || ||| | || || |||||||| ||||| ||
Sbjct: 712 gggccctaccttttaccagaggctgattcatatgtccgaagataaggtgaaattccgtaa 771

                                                                       
Query: 376 cacggggccggtgcacccgctcacgaggcagccggtcgcggaccgcaagaggttcggcgg 435
           ||| |||||||||||||| |||||||||||||| || || ||| | || ||||| || ||
Sbjct: 772 cactgggccggtgcaccccctcacgaggcagcctgttgccgacaggaaaaggtttggtgg 831

                                            
Query: 436 ngtcaagtttggggagatggagcgcgactgcct 468
            || |||||||| || |||||||| ||||||||
Sbjct: 832 agttaagtttggagaaatggagcgtgactgcct 864
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>ref|XM_480298.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3411

 Score =  127 bits (64), Expect = 4e-26
 Identities = 123/143 (86%)
 Strand = Plus / Plus

                                                                        
Query: 326  ttctaccagaggctgatccacatggctgaggacaaggtgaagttccggaacacggggccg 385
            ||||||||| ||||   ||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 2986 ttctaccagcggctccaccacatggccgaggacaaggtcaagttccggaacaccggcccg 3045

                                                                        
Query: 386  gtgcacccgctcacgaggcagccggtcgcggaccgcaagaggttcggcggngtcaagttt 445
            ||||||||||| ||| |||||||||| | |||||||    ||| |||||| |||||||| 
Sbjct: 3046 gtgcacccgctgacgcggcagccggtggaggaccgccgccggtacggcggcgtcaagttc 3105

                                   
Query: 446  ggggagatggagcgcgactgcct 468
            || ||||||||||||||||||||
Sbjct: 3106 ggcgagatggagcgcgactgcct 3128



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                        
Query: 41   caggagaacttcccttttacctgccaaggaatagttccagacatcgtgataaatccacac 100
            ||||||||||||||||||||   |||||| |||||||| ||||| ||||| ||||| || 
Sbjct: 2701 caggagaacttcccttttactcaccaaggcatagttcctgacattgtgatcaatccccat 2760

                                                        
Query: 101  gcctttcctacccgtcaaactccaggccagctgcttgaagctgc 144
            | |||||| || ||||| ||||| ||||| || |||||||||||
Sbjct: 2761 ggctttccaactcgtcagactcccggccaacttcttgaagctgc 2804
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  127 bits (64), Expect = 4e-26
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                           
Query: 326     ttctaccagaggctgatccacatggctgaggacaaggtgaagttccggaacacggggccg 385
               ||||||||| ||||   ||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 4185959 ttctaccagcggctccaccacatggccgaggacaaggtcaagttccggaacaccggcccg 4185900

                                                                           
Query: 386     gtgcacccgctcacgaggcagccggtcgcggaccgcaagaggttcggcggngtcaagttt 445
               ||||||||||| ||| |||||||||| | |||||||    ||| |||||| |||||||| 
Sbjct: 4185899 gtgcacccgctgacgcggcagccggtggaggaccgccgccggtacggcggcgtcaagttc 4185840

                                      
Query: 446     ggggagatggagcgcgactgcct 468
               || ||||||||||||||||||||
Sbjct: 4185839 ggcgagatggagcgcgactgcct 4185817



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                           
Query: 41      caggagaacttcccttttacctgccaaggaatagttccagacatcgtgataaatccacac 100
               ||||||||||||||||||||   |||||| |||||||| ||||| ||||| ||||| || 
Sbjct: 4187633 caggagaacttcccttttactcaccaaggcatagttcctgacattgtgatcaatccccat 4187574

                                                           
Query: 101     gcctttcctacccgtcaaactccaggccagctgcttgaagctgc 144
               | |||||| || ||||| ||||| ||||| || |||||||||||
Sbjct: 4187573 ggctttccaactcgtcagactcccggccaacttcttgaagctgc 4187530
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>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1590_E05
          Length = 148205

 Score =  127 bits (64), Expect = 4e-26
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                         
Query: 326   ttctaccagaggctgatccacatggctgaggacaaggtgaagttccggaacacggggccg 385
             ||||||||| ||||   ||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 85582 ttctaccagcggctccaccacatggccgaggacaaggtcaagttccggaacaccggcccg 85523

                                                                         
Query: 386   gtgcacccgctcacgaggcagccggtcgcggaccgcaagaggttcggcggngtcaagttt 445
             ||||||||||| ||| |||||||||| | |||||||    ||| |||||| |||||||| 
Sbjct: 85522 gtgcacccgctgacgcggcagccggtggaggaccgccgccggtacggcggcgtcaagttc 85463

                                    
Query: 446   ggggagatggagcgcgactgcct 468
             || ||||||||||||||||||||
Sbjct: 85462 ggcgagatggagcgcgactgcct 85440



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                         
Query: 41    caggagaacttcccttttacctgccaaggaatagttccagacatcgtgataaatccacac 100
             ||||||||||||||||||||   |||||| |||||||| ||||| ||||| ||||| || 
Sbjct: 87256 caggagaacttcccttttactcaccaaggcatagttcctgacattgtgatcaatccccat 87197

                                                         
Query: 101   gcctttcctacccgtcaaactccaggccagctgcttgaagctgc 144
             | |||||| || ||||| ||||| ||||| || |||||||||||
Sbjct: 87196 ggctttccaactcgtcagactcccggccaacttcttgaagctgc 87153
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>dbj|AK106914.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A10, full
            insert sequence
          Length = 1663

 Score =  127 bits (64), Expect = 4e-26
 Identities = 123/143 (86%)
 Strand = Plus / Plus

                                                                        
Query: 326  ttctaccagaggctgatccacatggctgaggacaaggtgaagttccggaacacggggccg 385
            ||||||||| ||||   ||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 966  ttctaccagcggctccaccacatggccgaggacaaggtcaagttccggaacaccggcccg 1025

                                                                        
Query: 386  gtgcacccgctcacgaggcagccggtcgcggaccgcaagaggttcggcggngtcaagttt 445
            ||||||||||| ||| |||||||||| | |||||||    ||| |||||| |||||||| 
Sbjct: 1026 gtgcacccgctgacgcggcagccggtggaggaccgccgccggtacggcggcgtcaagttc 1085

                                   
Query: 446  ggggagatggagcgcgactgcct 468
            || ||||||||||||||||||||
Sbjct: 1086 ggcgagatggagcgcgactgcct 1108



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                       
Query: 41  caggagaacttcccttttacctgccaaggaatagttccagacatcgtgataaatccacac 100
           ||||||||||||||||||||   |||||| |||||||| ||||| ||||| ||||| || 
Sbjct: 681 caggagaacttcccttttactcaccaaggcatagttcctgacattgtgatcaatccccat 740

                                                       
Query: 101 gcctttcctacccgtcaaactccaggccagctgcttgaagctgc 144
           | |||||| || ||||| ||||| ||||| || |||||||||||
Sbjct: 741 ggctttccaactcgtcagactcccggccaacttcttgaagctgc 784
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>gb|DQ011649.1| Lycopersicon esculentum RNA polymerase IV second largest subunit
            (RPD2) mRNA, partial cds
          Length = 3494

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 141/172 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1    catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
            ||||||||||||||| |||||  |||| ||||| ||||||||||| ||||||||||||||
Sbjct: 3027 catgcatggacaaaagggtgtccttggatttctggaatctcaggaaaacttcccttttac 3086

                                                                        
Query: 61   ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
                || || || |||||||| || || || ||||| || || |||||| || | |||||
Sbjct: 3087 gattcaggggatcgttccagatattgttatcaatccccatgcatttccttccaggcaaac 3146

                                                                
Query: 121  tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggt 172
             || || |||||||| ||||||||| |||||||||| || ||||| ||||||
Sbjct: 3147 ccctggtcagctgctagaagctgctctggggaagggcattgctctaggtggt 3198



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 341  atccacatggctgaggacaaggtgaagttccggaacac 378
            ||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 3367 atccatatggctgaagacaaggtgaaattccgtaacac 3404
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>gb|DQ011642.1| Antirrhinum majus RNA polymerase IV second largest subunit (RPD2)
            mRNA, partial cds
          Length = 2617

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 141/172 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1    catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
            ||||||||| |||||||||||| | || ||||| || || ||||| ||||||||||| ||
Sbjct: 1728 catgcatgggcaaaaaggtgttctggggtttctggagtcccaggaaaacttccctttcac 1787

                                                                        
Query: 61   ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
            |    |||||||||||||||||||||||||||| || || || |||||| |||| |||||
Sbjct: 1788 caaagaaggaatagttccagacatcgtgataaaccctcatgcatttccttcccggcaaac 1847

                                                                
Query: 121  tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggt 172
            ||| || || ||  | || |||||| |||| || ||||| || |||||||||
Sbjct: 1848 tcctggtcaacttttggaggctgctctgggcaaaggaattgcccttggtggt 1899
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>gb|DQ011640.1| Rhododendron macrophyllum RNA polymerase IV second largest subunit
            (RPD2) mRNA, partial cds
          Length = 3296

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 80/96 (83%)
 Strand = Plus / Plus

                                                                        
Query: 316  gggccccaacttctaccagaggctgatccacatggctgaggacaaggtgaagttccggaa 375
            |||||||| |||||||||| | |||| ||| ||| | || ||||| || ||||| || ||
Sbjct: 2637 gggccccaccttctaccagcgtctgacccatatgtcagaagacaaagtcaagtttcgcaa 2696

                                                
Query: 376  cacggggccggtgcacccgctcacgaggcagccggt 411
            |||||| || ||||| || |||||||||||||||||
Sbjct: 2697 cacgggcccagtgcatcccctcacgaggcagccggt 2732
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>gb|AY303171.1| Solanum bulbocastanum chromosome 8 clone 177O13, complete sequence
          Length = 163635

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 137/172 (79%)
 Strand = Plus / Plus

                                                                          
Query: 1      catgcatggacaaaaaggtgttgttggttttctagaatctcaggagaacttcccttttac 60
              ||||||||||||||| |||||  |||| | ||| || |||||||||||||||||||| ||
Sbjct: 143820 catgcatggacaaaagggtgtccttggatatctggagtctcaggagaacttccctttcac 143879

                                                                          
Query: 61     ctgccaaggaatagttccagacatcgtgataaatccacacgcctttcctacccgtcaaac 120
                  || || || |||||||| || || || ||||| || || |||||| |  | |||||
Sbjct: 143880 agttcaggggattgttccagatattgtaatcaatccccatgcatttccttcaaggcaaac 143939

                                                                  
Query: 121    tccaggccagctgcttgaagctgctttggggaagggaatcgctcttggtggt 172
               || || |||||||| |||||  ||||||||||||| || ||||| ||||||
Sbjct: 143940 acctggtcagctgctggaagcctctttggggaagggcattgctctaggtggt 143991



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 341    atccacatggctgaggacaaggtgaagttccg 372
              ||||| |||||||| ||||||||||| |||||
Sbjct: 144304 atccatatggctgaagacaaggtgaaattccg 144335
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>ref|NM_112691.1| Arabidopsis thaliana NRPD2b; DNA binding / DNA-directed RNA
            polymerase AT3G18090 (NRPD2b) mRNA, complete cds
          Length = 3117

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 102/127 (80%)
 Strand = Plus / Plus

                                                                        
Query: 342  tccacatggctgaggacaaggtgaagttccggaacacggggccggtgcacccgctcacga 401
            |||||||| | ||| |||| || |||||| ||||||| || || || |||||||||||  
Sbjct: 2720 tccacatgtcagagaacaaagtcaagttcaggaacaccggaccagtccacccgctcacac 2779

                                                                        
Query: 402  ggcagccggtcgcggaccgcaagaggttcggcggngtcaagtttggggagatggagcgcg 461
            | ||||| ||||| ||||| |||||||| |||||  | |  ||||| || |||||||| |
Sbjct: 2780 gccagccagtcgcagaccggaagaggtttggcgggataagatttggagaaatggagcgag 2839

                   
Query: 462  actgcct 468
            |||||||
Sbjct: 2840 actgcct 2846
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>gb|AY935712.1| Arabidopsis thaliana RNA polymerase IV second-largest subunit
            (NRPD2b) pseudogene mRNA, complete sequence
          Length = 3494

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 102/127 (80%)
 Strand = Plus / Plus

                                                                        
Query: 342  tccacatggctgaggacaaggtgaagttccggaacacggggccggtgcacccgctcacga 401
            |||||||| | ||| |||| || |||||| ||||||| || || || |||||||||||  
Sbjct: 3097 tccacatgtcagagaacaaagtcaagttcaggaacaccggaccagtccacccgctcacac 3156

                                                                        
Query: 402  ggcagccggtcgcggaccgcaagaggttcggcggngtcaagtttggggagatggagcgcg 461
            | ||||| ||||| ||||| |||||||| |||||  | |  ||||| || |||||||| |
Sbjct: 3157 gccagccagtcgcagaccggaagaggtttggcgggataagatttggagaaatggagcgag 3216

                   
Query: 462  actgcct 468
            |||||||
Sbjct: 3217 actgcct 3223
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>dbj|AB020749.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRC8
          Length = 76816

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 102/127 (80%)
 Strand = Plus / Plus

                                                                         
Query: 342   tccacatggctgaggacaaggtgaagttccggaacacggggccggtgcacccgctcacga 401
             |||||||| | ||| |||| || |||||| ||||||| || || || |||||||||||  
Sbjct: 28805 tccacatgtcagagaacaaagtcaagttcaggaacaccggaccagtccacccgctcacac 28864

                                                                         
Query: 402   ggcagccggtcgcggaccgcaagaggttcggcggngtcaagtttggggagatggagcgcg 461
             | ||||| ||||| ||||| |||||||| |||||  | |  ||||| || |||||||| |
Sbjct: 28865 gccagccagtcgcagaccggaagaggtttggcgggataagatttggagaaatggagcgag 28924

                    
Query: 462   actgcct 468
             |||||||
Sbjct: 28925 actgcct 28931
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>ref|NM_113282.2| Arabidopsis thaliana NRPD2a; DNA binding / DNA-directed RNA
            polymerase AT3G23780 (NRPD2a) mRNA, complete cds
          Length = 3955

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 101/127 (79%)
 Strand = Plus / Plus

                                                                        
Query: 342  tccacatggctgaggacaaggtgaagttccggaacacggggccggtgcacccgctcacga 401
            |||||||| | |||||||| || |||||| ||||||| || || || |||||||||||  
Sbjct: 3318 tccacatgtcagaggacaaagtcaagttcaggaacactggaccagtccacccgctcacac 3377

                                                                        
Query: 402  ggcagccggtcgcggaccgcaagaggttcggcggngtcaagtttggggagatggagcgcg 461
            | ||||| || || ||| | ||||| || |||||  | || ||||| || |||||||| |
Sbjct: 3378 gccagccagttgcagacaggaagagatttggcgggataaaatttggagaaatggagcgag 3437

                   
Query: 462  actgcct 468
            |||||||
Sbjct: 3438 actgcct 3444
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>gb|AY935711.1| Arabidopsis thaliana RNA polymerase IV second-largest subunit
            (NRPD2a) mRNA, complete cds
          Length = 3519

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 101/127 (79%)
 Strand = Plus / Plus

                                                                        
Query: 342  tccacatggctgaggacaaggtgaagttccggaacacggggccggtgcacccgctcacga 401
            |||||||| | |||||||| || |||||| ||||||| || || || |||||||||||  
Sbjct: 3122 tccacatgtcagaggacaaagtcaagttcaggaacactggaccagtccacccgctcacac 3181

                                                                        
Query: 402  ggcagccggtcgcggaccgcaagaggttcggcggngtcaagtttggggagatggagcgcg 461
            | ||||| || || ||| | ||||| || |||||  | || ||||| || |||||||| |
Sbjct: 3182 gccagccagttgcagacaggaagagatttggcgggataaaatttggagaaatggagcgag 3241

                   
Query: 462  actgcct 468
            |||||||
Sbjct: 3242 actgcct 3248
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>emb|CR729325.2|CNS0GPOZ Tetraodon nigroviridis full-length cDNA
          Length = 1166

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 446 ggggagatggagcgcgactgcctg 469
           ||||||||||||||||||||||||
Sbjct: 478 ggggagatggagcgcgactgcctg 501
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>gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, complete genome
          Length = 190289

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 430    cggcggngtcaagtttggggagatggagcgcgactgcct 468
              ||||||  ||||||| || ||||||||||||||||||||
Sbjct: 151134 cggcggcatcaagttcggcgagatggagcgcgactgcct 151172
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>gb|U86941.1|MCU86941 Molluscum contagiosum virus subtype 1 clone B1-41; B-K; B-O; B2-19
           homolog of vaccinia A24R (B1-41-1) gene, partial cds,
           homolog of vaccinia A25L (B1-41-2), homolog of variola
           A29L (B1-41-3), hypothetical protein (B1-41-4) and
           homolog of vaccinia A27L (B1-41-5) genes, complete cds,
           and homolog of vaccinia A28L (B1-41-6) gene, partial cds
          Length = 7037

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 430 cggcggngtcaagtttggggagatggagcgcgactgcct 468
           ||||||  ||||||| || ||||||||||||||||||||
Sbjct: 663 cggcggcatcaagttcggcgagatggagcgcgactgcct 701
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>dbj|AK176111.1| Arabidopsis thaliana mRNA for putative DNA-directed RNA polymerase
            subunit, complete cds, clone: RAFL22-90-B22
          Length = 2280

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 101/127 (79%)
 Strand = Plus / Plus

                                                                        
Query: 342  tccacatggctgaggacaaggtgaagttccggaacacggggccggtgcacccgctcacga 401
            |||||||| | |||||||| || |||||| ||||||| || || || |||||||||||  
Sbjct: 1633 tccacatgtcagaggacaaagtcaagttcaggaacactggaccagtccacccgctcacac 1692

                                                                        
Query: 402  ggcagccggtcgcggaccgcaagaggttcggcggngtcaagtttggggagatggagcgcg 461
            | ||||| || || ||| | ||||| || |||||  | || ||||| || |||||||| |
Sbjct: 1693 gccagccagttgcagacaggaagagatttggcgggataaaatttggagaaatggagcgag 1752

                   
Query: 462  actgcct 468
            |||||||
Sbjct: 1753 actgcct 1759
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>gb|AY862891.1| Arabidopsis thaliana polymerase IV second largest subunit (RPD2a)
            mRNA, complete cds
          Length = 3715

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 101/127 (79%)
 Strand = Plus / Plus

                                                                        
Query: 342  tccacatggctgaggacaaggtgaagttccggaacacggggccggtgcacccgctcacga 401
            |||||||| | |||||||| || |||||| ||||||| || || || |||||||||||  
Sbjct: 3318 tccacatgtcagaggacaaagtcaagttcaggaacactggaccagtccacccgctcacac 3377

                                                                        
Query: 402  ggcagccggtcgcggaccgcaagaggttcggcggngtcaagtttggggagatggagcgcg 461
            | ||||| || || ||| | ||||| || |||||  | || ||||| || |||||||| |
Sbjct: 3378 gccagccagttgcagacaggaagagatttggcgggataaaatttggagaaatggagcgag 3437

                   
Query: 462  actgcct 468
            |||||||
Sbjct: 3438 actgcct 3444
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>dbj|AP000377.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYM9
          Length = 71178

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 101/127 (79%)
 Strand = Plus / Minus

                                                                         
Query: 342   tccacatggctgaggacaaggtgaagttccggaacacggggccggtgcacccgctcacga 401
             |||||||| | |||||||| || |||||| ||||||| || || || |||||||||||  
Sbjct: 42390 tccacatgtcagaggacaaagtcaagttcaggaacactggaccagtccacccgctcacac 42331

                                                                         
Query: 402   ggcagccggtcgcggaccgcaagaggttcggcggngtcaagtttggggagatggagcgcg 461
             | ||||| || || ||| | ||||| || |||||  | || ||||| || |||||||| |
Sbjct: 42330 gccagccagttgcagacaggaagagatttggcgggataaaatttggagaaatggagcgag 42271

                    
Query: 462   actgcct 468
             |||||||
Sbjct: 42270 actgcct 42264
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>ref|XM_724581.1| Plasmodium yoelii yoelii str. 17XNL DNA-directed RNA polymerase,
            subunit beta (PY01847) partial mRNA
          Length = 3972

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 5    catggacaaaaaggtgttgttgg 27
            |||||||||||||||||||||||
Sbjct: 3277 catggacaaaaaggtgttgttgg 3299
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>ref|XM_675011.1| Plasmodium berghei strain ANKA hypothetical protein (PB000108.01.0)
           partial mRNA
          Length = 1341

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 5   catggacaaaaaggtgttgttgg 27
           |||||||||||||||||||||||
Sbjct: 646 catggacaaaaaggtgttgttgg 668
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>emb|AL160270.19| Human DNA sequence from clone RP11-296L22 on chromosome 9 Contains the
             5' end of the C9orf25 gene for chromosome 9 open reading
             frame 25 (FLJ39031), the DNAI1 gene for dynein axonemal
             intermediate polypeptide 1, the CNTFR gene for ciliary
             neurotrophic factor receptor, a novel pseudogene, three
             novel genes, the 3' end of the DCTN3 gene for dynactin
             (p22) and five CpG islands, complete sequence
          Length = 199114

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 262   tgaaagtgttctcaatggccaaa 284
             |||||||||||||||||||||||
Sbjct: 17909 tgaaagtgttctcaatggccaaa 17887
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>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete
             sequence
          Length = 250531

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 4     gcatggacaaaaaggtgttgttggttt 30
             ||||||||||||||||||||| |||||
Sbjct: 44199 gcatggacaaaaaggtgttgtaggttt 44173
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>gb|DQ377805.1|DQ377804S2 Squirrelpox virus 1296/99, partial genome
          Length = 37108

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 438  tcaagtttggggagatggagcgcgactgc 466
            ||||||| |||||||||||||| ||||||
Sbjct: 4359 tcaagttcggggagatggagcgggactgc 4387
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>gb|DQ020659.1| Chlamydomonas reinhardtii RNA polymerase IV second largest subunit
            precursor (RPB2) mRNA, complete cds
          Length = 4824

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 449  gagatggagcgcgactgcctg 469
            |||||||||||||||||||||
Sbjct: 3241 gagatggagcgcgactgcctg 3261
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>ref|XM_740201.1| Plasmodium chabaudi chabaudi DNA-directed RNA polymerase, beta
            subunit (PC000183.05.0) partial mRNA
          Length = 3654

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 4    gcatggacaaaaaggtgttgt 24
            |||||||||||||||||||||
Sbjct: 3438 gcatggacaaaaaggtgttgt 3458
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 6      atggacaaaaaggtgttgttggttt 30
              |||||||||||||||| ||||||||
Sbjct: 302190 atggacaaaaaggtgtagttggttt 302214
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>emb|AL672029.7| Mouse DNA sequence from clone RP23-416F22 on chromosome X, complete
             sequence
          Length = 189958

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   aaaatcagatatgcaacacca 193
             |||||||||||||||||||||
Sbjct: 38861 aaaatcagatatgcaacacca 38881
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>gb|AC167816.4| Mus musculus BAC clone RP23-317F20 from chromosome 9, complete sequence
          Length = 198915

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 135   ttgaagctgctttggggaagggaa 158
             ||||||||||||||||||| ||||
Sbjct: 11952 ttgaagctgctttggggaaaggaa 11975
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>gb|AC131521.5| Rattus norvegicus 2 BAC CH230-275M7 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 191106

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 136  tgaagctgctttggggaagg 155
            ||||||||||||||||||||
Sbjct: 6501 tgaagctgctttggggaagg 6482
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>ref|XM_720301.1| Plasmodium yoelii yoelii str. 17XNL DNA-directed RNA polymerase
            subunit beta (PY05002) partial mRNA
          Length = 4413

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    catggacaaaaaggtgttgt 24
            ||||||||||||||||||||
Sbjct: 3487 catggacaaaaaggtgttgt 3506
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>emb|AL591687.9| Human DNA sequence from clone RP11-569M12 on chromosome 10, complete
            sequence
          Length = 16697

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 338  ctgatccacatggctgagga 357
            ||||||||||||||||||||
Sbjct: 5845 ctgatccacatggctgagga 5864
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>emb|AL359846.11| Human DNA sequence from clone RP11-413C10 on chromosome 9q31.1-31.3
             Contains three novel olfactory (seven transmembrane helix)
             receptor genes, an olfactory receptor, family 1, subfamily
             A, member 1 (OR17-1) (OR1A1) pseudogene, a novel olfactory
             (seven transmembrane helix receptor pseudogene, a novel
             gene (DKFZp564D177), a novel gene (FLJ11275), the 3' end
             of the ABCA1 gene for ATP-binding cassette, sub-family A
             (ABC1), member 1 (TGD, CERP, HDLDT1) and two CpG islands,
             complete sequence
          Length = 182012

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   aaaatcagatatgcaacacc 192
             ||||||||||||||||||||
Sbjct: 93720 aaaatcagatatgcaacacc 93701
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>emb|AL158158.14| Human DNA sequence from clone RP11-427L11 on chromosome 9q31.2-32
              Contains the TXN gene for thioredoxin, the gene for a novel
              protein similar to thioredoxin, the 3' end of the gene for
              the likely ortholog of mouse polydom (POLYDOM) and two CpG
              islands, complete sequence
          Length = 194835

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    tgaagctgctttggggaagg 155
              ||||||||||||||||||||
Sbjct: 115303 tgaagctgctttggggaagg 115322
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>emb|AL161734.12| Human DNA sequence from clone RP11-33M22 on chromosome 1q25.2-31.2
             Contains the 3' end of the CACNA1E gene for calcium
             channel voltage-dependent alpha 1E subunit, complete
             sequence
          Length = 167099

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   catggctgaggacaaggtga 365
             ||||||||||||||||||||
Sbjct: 15722 catggctgaggacaaggtga 15741
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>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 446   ggggagatggagcgcgactgcctg 469
             ||||||||||||||||| ||||||
Sbjct: 50112 ggggagatggagcgcgattgcctg 50089
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>gb|AC153538.10| Mus musculus 10 BAC RP23-136I11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210649

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     ttctagaatctcaggagaacttcc 53
              ||||||||||||| ||||||||||
Sbjct: 202535 ttctagaatctcatgagaacttcc 202558
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>emb|CR759967.5| Zebrafish DNA sequence from clone DKEY-94P13 in linkage group 5,
             complete sequence
          Length = 61816

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   aaggtgaagttccggaacac 378
             ||||||||||||||||||||
Sbjct: 48686 aaggtgaagttccggaacac 48667
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 236     aagcttgggttttcaagagg 255
               ||||||||||||||||||||
Sbjct: 1362070 aagcttgggttttcaagagg 1362089
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>dbj|AB076248.1| Mus musculus DNA, BAC clone:No.251,465
          Length = 158570

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    ggccagctgcttgaagctgc 144
              ||||||||||||||||||||
Sbjct: 103549 ggccagctgcttgaagctgc 103568
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>gb|AC156504.5| Mus musculus 10 BAC RP24-315I19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 208535

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 30     ttctagaatctcaggagaacttcc 53
              ||||||||||||| ||||||||||
Sbjct: 196603 ttctagaatctcatgagaacttcc 196580
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>gb|AY217093.1| Tick-borne encephalitis virus strain MDJ-01 nonfunctional polyprotein
            gene, complete sequence
          Length = 10242

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  tggctgaggacaaggtgaag 367
            ||||||||||||||||||||
Sbjct: 8336 tggctgaggacaaggtgaag 8355
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>gb|AF249962.1|AF249962 Reinhardtia gracilis malate synthase gene, exons 2 and 3 and
           partial cds
          Length = 490

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 cacgaggcagccggtcgcgg 416
           ||||||||||||||||||||
Sbjct: 113 cacgaggcagccggtcgcgg 94
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>gb|AC000029.17| Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 In GNAZ-BCR Region,
             complete sequence
          Length = 142979

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    gttttctagaatctcaggag 46
             ||||||||||||||||||||
Sbjct: 52473 gttttctagaatctcaggag 52492
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>gb|AC093761.3| Homo sapiens BAC clone RP11-89I4 from 4, complete sequence
          Length = 155154

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     tcaggagaacttccctttta 59
              ||||||||||||||||||||
Sbjct: 152608 tcaggagaacttccctttta 152627
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>gb|AY182009.1| Tick-borne encephalitis virus strain Senzhang polyprotein gene,
            complete cds
          Length = 10245

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  tggctgaggacaaggtgaag 367
            ||||||||||||||||||||
Sbjct: 8336 tggctgaggacaaggtgaag 8355
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 450    agatggagcgcgactgcctgctggccac 477
              |||||||||||||  |||||||||||||
Sbjct: 675641 agatggagcgcgagggcctgctggccac 675614
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>gb|AF223391.1|AF239258S3 Homo sapiens calcium channel alpha1E subunit (CACNA1E) gene, exons 7-49,
              and partial cds, alternatively spliced
          Length = 316704

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    catggctgaggacaaggtga 365
              ||||||||||||||||||||
Sbjct: 173403 catggctgaggacaaggtga 173422
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>dbj|AP002802.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-876F14, complete
             sequence
          Length = 205594

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   aagtgttctcaatggccaaa 284
             ||||||||||||||||||||
Sbjct: 65814 aagtgttctcaatggccaaa 65795
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>emb|AL611963.24| Mouse DNA sequence from clone RP23-79J18 on chromosome 4, complete
             sequence
          Length = 222196

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   ggccagctgcttgaagctgc 144
             ||||||||||||||||||||
Sbjct: 23849 ggccagctgcttgaagctgc 23868
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    aagcttgggttttcaagagg 255
              ||||||||||||||||||||
Sbjct: 258813 aagcttgggttttcaagagg 258794
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>dbj|AB073428.1| Ciona savignyi mRNA for spondin, complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 tcaatggccaaaccggcaaa 292
           ||||||||||||||||||||
Sbjct: 992 tcaatggccaaaccggcaaa 973


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,976,610
Number of Sequences: 3902068
Number of extensions: 3976610
Number of successful extensions: 83504
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83293
Number of HSP's gapped (non-prelim): 199
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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