ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast75f02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete sequence Length = 138345 Score = 317 bits (160), Expect = 2e-83 Identities = 280/320 (87%) Strand = Plus / Minus Query: 128 cgaacggcgcggcgaacgacctgctccccaagtacggcctcccgagggggctgatcccgg 187 |||||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||| Sbjct: 135026 cgaacggcgcggcgaacgacctcctcccgaagtacggcctccccaggggcctcatcccgg 134967 Query: 188 actcggtcagctcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgg 247 |||| || |||||||| |||||||||||| || || || |||||||||||||| |||| Sbjct: 134966 actccgtagcctcctacagcttcgacgaggccacgggggagttcgagatccacctggcgg 134907 Query: 248 gcacctgctacgtccgcttcggcgaccacctcgtctactacgaccggaccctccgcggct 307 | |||||||||||| | |||||| |||||||||||||||||| ||| | |||||||| Sbjct: 134906 ggacctgctacgtctggttcggctcccacctcgtctactacgagaggagcgtccgcggcc 134847 Query: 308 gcctctccaagggcaggatcgccggcctctccggcatccaggccaagaagctcttcctct 367 ||||||| | ||| ||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 134846 gcctctcgtacggcgccatctccgacctctccggcatccaggccaagaagctcttcctct 134787 Query: 368 gggtctccgtctccggcatcgtcgcccaccccgacgagggcaccctcgagttccaggtcg 427 ||||||||||| |||| |||||||| ||||| ||| |||||||| ||||||||||||||| Sbjct: 134786 gggtctccgtcaccgggatcgtcgcgcacccggaccagggcaccgtcgagttccaggtcg 134727 Query: 428 gcttcgtctccgaggagctc 447 ||||||||||||||| |||| Sbjct: 134726 gcttcgtctccgaggcgctc 134707 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 334 ctctccggcatccaggccaagaagctcttcctctgggtctccgtctccggcatcgtcgcc 393 |||||||| |||||||| ||||| ||||| ||||||||||| || || |||||||||| Sbjct: 137536 ctctccgggatccaggcgcagaagttcttcgtctgggtctccatcaccaccatcgtcgcc 137477 Query: 394 caccccgacgagggcaccctcgagttccaggtcggcttcgtctccgagg 442 ||||||||| |||||||| ||||||||| || || ||| ||||||||| Sbjct: 137476 caccccgaccagggcaccgtcgagttccgggcggggttcatctccgagg 137428 Score = 79.8 bits (40), Expect = 7e-12 Identities = 121/148 (81%) Strand = Plus / Minus Query: 139 gcgaacgacctgctccccaagtacggcctcccgagggggctgatcccggactcggtcagc 198 ||||||||||| ||||| |||||||||||||| |||||||||||||||| || || Sbjct: 137731 gcgaacgacctcctcccggagtacggcctcccgcgggggctgatcccggagacgatcgcg 137672 Query: 199 tcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgggcacctgctac 258 ||||||||||||||| | | || || ||||||||||||| || || ||||||||||| Sbjct: 137671 tcctacaccttcgacaacgacacgggggacttcgagatccggctgacgagcacctgctac 137612 Query: 259 gtccgcttcggcgaccacctcgtctact 286 || | |||||| |||||||| ||||| Sbjct: 137611 atctggttcggctcccacctcgcctact 137584
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 317 bits (160), Expect = 2e-83 Identities = 280/320 (87%) Strand = Plus / Minus Query: 128 cgaacggcgcggcgaacgacctgctccccaagtacggcctcccgagggggctgatcccgg 187 |||||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||| Sbjct: 27434819 cgaacggcgcggcgaacgacctcctcccgaagtacggcctccccaggggcctcatcccgg 27434760 Query: 188 actcggtcagctcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgg 247 |||| || |||||||| |||||||||||| || || || |||||||||||||| |||| Sbjct: 27434759 actccgtagcctcctacagcttcgacgaggccacgggggagttcgagatccacctggcgg 27434700 Query: 248 gcacctgctacgtccgcttcggcgaccacctcgtctactacgaccggaccctccgcggct 307 | |||||||||||| | |||||| |||||||||||||||||| ||| | |||||||| Sbjct: 27434699 ggacctgctacgtctggttcggctcccacctcgtctactacgagaggagcgtccgcggcc 27434640 Query: 308 gcctctccaagggcaggatcgccggcctctccggcatccaggccaagaagctcttcctct 367 ||||||| | ||| ||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 27434639 gcctctcgtacggcgccatctccgacctctccggcatccaggccaagaagctcttcctct 27434580 Query: 368 gggtctccgtctccggcatcgtcgcccaccccgacgagggcaccctcgagttccaggtcg 427 ||||||||||| |||| |||||||| ||||| ||| |||||||| ||||||||||||||| Sbjct: 27434579 gggtctccgtcaccgggatcgtcgcgcacccggaccagggcaccgtcgagttccaggtcg 27434520 Query: 428 gcttcgtctccgaggagctc 447 ||||||||||||||| |||| Sbjct: 27434519 gcttcgtctccgaggcgctc 27434500 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 334 ctctccggcatccaggccaagaagctcttcctctgggtctccgtctccggcatcgtcgcc 393 |||||||| |||||||| ||||| ||||| ||||||||||| || || |||||||||| Sbjct: 27437329 ctctccgggatccaggcgcagaagttcttcgtctgggtctccatcaccaccatcgtcgcc 27437270 Query: 394 caccccgacgagggcaccctcgagttccaggtcggcttcgtctccgagg 442 ||||||||| |||||||| ||||||||| || || ||| ||||||||| Sbjct: 27437269 caccccgaccagggcaccgtcgagttccgggcggggttcatctccgagg 27437221 Score = 79.8 bits (40), Expect = 7e-12 Identities = 121/148 (81%) Strand = Plus / Minus Query: 139 gcgaacgacctgctccccaagtacggcctcccgagggggctgatcccggactcggtcagc 198 ||||||||||| ||||| |||||||||||||| |||||||||||||||| || || Sbjct: 27437524 gcgaacgacctcctcccggagtacggcctcccgcgggggctgatcccggagacgatcgcg 27437465 Query: 199 tcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgggcacctgctac 258 ||||||||||||||| | | || || ||||||||||||| || || ||||||||||| Sbjct: 27437464 tcctacaccttcgacaacgacacgggggacttcgagatccggctgacgagcacctgctac 27437405 Query: 259 gtccgcttcggcgaccacctcgtctact 286 || | |||||| |||||||| ||||| Sbjct: 27437404 atctggttcggctcccacctcgcctact 27437377
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 317 bits (160), Expect = 2e-83 Identities = 280/320 (87%) Strand = Plus / Minus Query: 128 cgaacggcgcggcgaacgacctgctccccaagtacggcctcccgagggggctgatcccgg 187 |||||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||| Sbjct: 27526142 cgaacggcgcggcgaacgacctcctcccgaagtacggcctccccaggggcctcatcccgg 27526083 Query: 188 actcggtcagctcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgg 247 |||| || |||||||| |||||||||||| || || || |||||||||||||| |||| Sbjct: 27526082 actccgtagcctcctacagcttcgacgaggccacgggggagttcgagatccacctggcgg 27526023 Query: 248 gcacctgctacgtccgcttcggcgaccacctcgtctactacgaccggaccctccgcggct 307 | |||||||||||| | |||||| |||||||||||||||||| ||| | |||||||| Sbjct: 27526022 ggacctgctacgtctggttcggctcccacctcgtctactacgagaggagcgtccgcggcc 27525963 Query: 308 gcctctccaagggcaggatcgccggcctctccggcatccaggccaagaagctcttcctct 367 ||||||| | ||| ||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 27525962 gcctctcgtacggcgccatctccgacctctccggcatccaggccaagaagctcttcctct 27525903 Query: 368 gggtctccgtctccggcatcgtcgcccaccccgacgagggcaccctcgagttccaggtcg 427 ||||||||||| |||| |||||||| ||||| ||| |||||||| ||||||||||||||| Sbjct: 27525902 gggtctccgtcaccgggatcgtcgcgcacccggaccagggcaccgtcgagttccaggtcg 27525843 Query: 428 gcttcgtctccgaggagctc 447 ||||||||||||||| |||| Sbjct: 27525842 gcttcgtctccgaggcgctc 27525823 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 334 ctctccggcatccaggccaagaagctcttcctctgggtctccgtctccggcatcgtcgcc 393 |||||||| |||||||| ||||| ||||| ||||||||||| || || |||||||||| Sbjct: 27528652 ctctccgggatccaggcgcagaagttcttcgtctgggtctccatcaccaccatcgtcgcc 27528593 Query: 394 caccccgacgagggcaccctcgagttccaggtcggcttcgtctccgagg 442 ||||||||| |||||||| ||||||||| || || ||| ||||||||| Sbjct: 27528592 caccccgaccagggcaccgtcgagttccgggcggggttcatctccgagg 27528544 Score = 79.8 bits (40), Expect = 7e-12 Identities = 121/148 (81%) Strand = Plus / Minus Query: 139 gcgaacgacctgctccccaagtacggcctcccgagggggctgatcccggactcggtcagc 198 ||||||||||| ||||| |||||||||||||| |||||||||||||||| || || Sbjct: 27528847 gcgaacgacctcctcccggagtacggcctcccgcgggggctgatcccggagacgatcgcg 27528788 Query: 199 tcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgggcacctgctac 258 ||||||||||||||| | | || || ||||||||||||| || || ||||||||||| Sbjct: 27528787 tcctacaccttcgacaacgacacgggggacttcgagatccggctgacgagcacctgctac 27528728 Query: 259 gtccgcttcggcgaccacctcgtctact 286 || | |||||| |||||||| ||||| Sbjct: 27528727 atctggttcggctcccacctcgcctact 27528700
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 317 bits (160), Expect = 2e-83 Identities = 280/320 (87%) Strand = Plus / Plus Query: 128 cgaacggcgcggcgaacgacctgctccccaagtacggcctcccgagggggctgatcccgg 187 |||||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||| Sbjct: 115695 cgaacggcgcggcgaacgacctcctcccgaagtacggcctccccaggggcctcatcccgg 115754 Query: 188 actcggtcagctcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgg 247 |||| || |||||||| |||||||||||| || || || |||||||||||||| |||| Sbjct: 115755 actccgtagcctcctacagcttcgacgaggccacgggggagttcgagatccacctggcgg 115814 Query: 248 gcacctgctacgtccgcttcggcgaccacctcgtctactacgaccggaccctccgcggct 307 | |||||||||||| | |||||| |||||||||||||||||| ||| | |||||||| Sbjct: 115815 ggacctgctacgtctggttcggctcccacctcgtctactacgagaggagcgtccgcggcc 115874 Query: 308 gcctctccaagggcaggatcgccggcctctccggcatccaggccaagaagctcttcctct 367 ||||||| | ||| ||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 115875 gcctctcgtacggcgccatctccgacctctccggcatccaggccaagaagctcttcctct 115934 Query: 368 gggtctccgtctccggcatcgtcgcccaccccgacgagggcaccctcgagttccaggtcg 427 ||||||||||| |||| |||||||| ||||| ||| |||||||| ||||||||||||||| Sbjct: 115935 gggtctccgtcaccgggatcgtcgcgcacccggaccagggcaccgtcgagttccaggtcg 115994 Query: 428 gcttcgtctccgaggagctc 447 ||||||||||||||| |||| Sbjct: 115995 gcttcgtctccgaggcgctc 116014 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Plus Query: 334 ctctccggcatccaggccaagaagctcttcctctgggtctccgtctccggcatcgtcgcc 393 |||||||| |||||||| ||||| ||||| ||||||||||| || || |||||||||| Sbjct: 113185 ctctccgggatccaggcgcagaagttcttcgtctgggtctccatcaccaccatcgtcgcc 113244 Query: 394 caccccgacgagggcaccctcgagttccaggtcggcttcgtctccgagg 442 ||||||||| |||||||| ||||||||| || || ||| ||||||||| Sbjct: 113245 caccccgaccagggcaccgtcgagttccgggcggggttcatctccgagg 113293 Score = 79.8 bits (40), Expect = 7e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 139 gcgaacgacctgctccccaagtacggcctcccgagggggctgatcccggactcggtcagc 198 ||||||||||| ||||| |||||||||||||| |||||||||||||||| || || Sbjct: 112990 gcgaacgacctcctcccggagtacggcctcccgcgggggctgatcccggagacgatcgcg 113049 Query: 199 tcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgggcacctgctac 258 ||||||||||||||| | | || || ||||||||||||| || || ||||||||||| Sbjct: 113050 tcctacaccttcgacaacgacacgggggacttcgagatccggctgacgagcacctgctac 113109 Query: 259 gtccgcttcggcgaccacctcgtctact 286 || | |||||| |||||||| ||||| Sbjct: 113110 atctggttcggctcccacctcgcctact 113137
>dbj|AK111313.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-C05, full insert sequence Length = 1014 Score = 317 bits (160), Expect = 2e-83 Identities = 280/320 (87%) Strand = Plus / Plus Query: 128 cgaacggcgcggcgaacgacctgctccccaagtacggcctcccgagggggctgatcccgg 187 |||||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||| Sbjct: 141 cgaacggcgcggcgaacgacctcctcccgaagtacggcctccccaggggcctcatcccgg 200 Query: 188 actcggtcagctcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgg 247 |||| || |||||||| |||||||||||| || || || |||||||||||||| |||| Sbjct: 201 actccgtagcctcctacagcttcgacgaggccacgggggagttcgagatccacctggcgg 260 Query: 248 gcacctgctacgtccgcttcggcgaccacctcgtctactacgaccggaccctccgcggct 307 | |||||||||||| | |||||| |||||||||||||||||| ||| | |||||||| Sbjct: 261 ggacctgctacgtctggttcggctcccacctcgtctactacgagaggagcgtccgcggcc 320 Query: 308 gcctctccaagggcaggatcgccggcctctccggcatccaggccaagaagctcttcctct 367 ||||||| | ||| ||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 321 gcctctcgtacggcgccatctccgacctctccggcatccaggccaagaagctcttcctct 380 Query: 368 gggtctccgtctccggcatcgtcgcccaccccgacgagggcaccctcgagttccaggtcg 427 ||||||||||| |||| |||||||| ||||| ||| |||||||| ||||||||||||||| Sbjct: 381 gggtctccgtcaccgggatcgtcgcgcacccggaccagggcaccgtcgagttccaggtcg 440 Query: 428 gcttcgtctccgaggagctc 447 ||||||||||||||| |||| Sbjct: 441 gcttcgtctccgaggcgctc 460
>dbj|AK059787.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D10, full insert sequence Length = 961 Score = 317 bits (160), Expect = 2e-83 Identities = 280/320 (87%) Strand = Plus / Plus Query: 128 cgaacggcgcggcgaacgacctgctccccaagtacggcctcccgagggggctgatcccgg 187 |||||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||| Sbjct: 145 cgaacggcgcggcgaacgacctcctcccgaagtacggcctccccaggggcctcatcccgg 204 Query: 188 actcggtcagctcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgg 247 |||| || |||||||| |||||||||||| || || || |||||||||||||| |||| Sbjct: 205 actccgtagcctcctacagcttcgacgaggccacgggggagttcgagatccacctggcgg 264 Query: 248 gcacctgctacgtccgcttcggcgaccacctcgtctactacgaccggaccctccgcggct 307 | |||||||||||| | |||||| |||||||||||||||||| ||| | |||||||| Sbjct: 265 ggacctgctacgtctggttcggctcccacctcgtctactacgagaggagcgtccgcggcc 324 Query: 308 gcctctccaagggcaggatcgccggcctctccggcatccaggccaagaagctcttcctct 367 ||||||| | ||| ||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 325 gcctctcgtacggcgccatctccgacctctccggcatccaggccaagaagctcttcctct 384 Query: 368 gggtctccgtctccggcatcgtcgcccaccccgacgagggcaccctcgagttccaggtcg 427 ||||||||||| |||| |||||||| ||||| ||| |||||||| ||||||||||||||| Sbjct: 385 gggtctccgtcaccgggatcgtcgcgcacccggaccagggcaccgtcgagttccaggtcg 444 Query: 428 gcttcgtctccgaggagctc 447 ||||||||||||||| |||| Sbjct: 445 gcttcgtctccgaggcgctc 464
>gb|AY104298.1| Zea mays PCO095355 mRNA sequence Length = 950 Score = 289 bits (146), Expect = 4e-75 Identities = 266/306 (86%) Strand = Plus / Plus Query: 132 cggcgcggcgaacgacctgctccccaagtacggcctcccgagggggctgatcccggactc 191 ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| Sbjct: 171 cggcgcggcgaacgacctgctgcccaagtacggcctcccgaaggggctcatcccggactc 230 Query: 192 ggtcagctcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgggcac 251 |||| |||||||| |||||||||||| || |||| |||||||||||||||||| |||| Sbjct: 231 cgtcacctcctacagcttcgacgaggccacgggcgccttcgagatccacctcgccagcac 290 Query: 252 ctgctacgtccgcttcggcgaccacctcgtctactacgaccggaccctccgcggctgcct 311 ||||||||||| ||||||| |||||||||||||||||| ||||| | |||| || Sbjct: 291 ctgctacgtccacttcggctcccacctcgtctactacgagaggaccataaccggcaagct 350 Query: 312 ctccaagggcaggatcgccggcctctccggcatccaggccaagaagctcttcctctgggt 371 ||||| |||| ||| | | |||||||||| |||||||||||||||||||||||||||| Sbjct: 351 ctccaggggcgccatctcggacctctccggcgtccaggccaagaagctcttcctctgggt 410 Query: 372 ctccgtctccggcatcgtcgcccaccccgacgagggcaccctcgagttccaggtcggctt 431 || |||| | || || ||||| ||||||||| |||||||| |||||||||||| |||||| Sbjct: 411 ctacgtcacggggatggtcgcgcaccccgaccagggcaccatcgagttccaggccggctt 470 Query: 432 cgtctc 437 |||||| Sbjct: 471 cgtctc 476
>dbj|AK069038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003K18, full insert sequence Length = 984 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Plus Query: 334 ctctccggcatccaggccaagaagctcttcctctgggtctccgtctccggcatcgtcgcc 393 |||||||| |||||||| ||||| ||||| ||||||||||| || || |||||||||| Sbjct: 367 ctctccgggatccaggcgcagaagttcttcgtctgggtctccatcaccaccatcgtcgcc 426 Query: 394 caccccgacgagggcaccctcgagttccaggtcggcttcgtctccgagg 442 ||||||||| |||||||| ||||||||| || || ||| ||||||||| Sbjct: 427 caccccgaccagggcaccgtcgagttccgggcggggttcatctccgagg 475 Score = 79.8 bits (40), Expect = 7e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 139 gcgaacgacctgctccccaagtacggcctcccgagggggctgatcccggactcggtcagc 198 ||||||||||| ||||| |||||||||||||| |||||||||||||||| || || Sbjct: 172 gcgaacgacctcctcccggagtacggcctcccgcgggggctgatcccggagacgatcgcg 231 Query: 199 tcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgggcacctgctac 258 ||||||||||||||| | | || || ||||||||||||| || || ||||||||||| Sbjct: 232 tcctacaccttcgacaacgacacgggggacttcgagatccggctgacgagcacctgctac 291 Query: 259 gtccgcttcggcgaccacctcgtctact 286 || | |||||| |||||||| ||||| Sbjct: 292 atctggttcggctcccacctcgcctact 319
>dbj|AK060462.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C05, full insert sequence Length = 1204 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Plus Query: 334 ctctccggcatccaggccaagaagctcttcctctgggtctccgtctccggcatcgtcgcc 393 |||||||| |||||||| ||||| ||||| ||||||||||| || || |||||||||| Sbjct: 366 ctctccgggatccaggcgcagaagttcttcgtctgggtctccatcaccaccatcgtcgcc 425 Query: 394 caccccgacgagggcaccctcgagttccaggtcggcttcgtctccgagg 442 ||||||||| |||||||| ||||||||| || || ||| ||||||||| Sbjct: 426 caccccgaccagggcaccgtcgagttccgggcggggttcatctccgagg 474 Score = 79.8 bits (40), Expect = 7e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 139 gcgaacgacctgctccccaagtacggcctcccgagggggctgatcccggactcggtcagc 198 ||||||||||| ||||| |||||||||||||| |||||||||||||||| || || Sbjct: 171 gcgaacgacctcctcccggagtacggcctcccgcgggggctgatcccggagacgatcgcg 230 Query: 199 tcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgggcacctgctac 258 ||||||||||||||| | | || || ||||||||||||| || || ||||||||||| Sbjct: 231 tcctacaccttcgacaacgacacgggggacttcgagatccggctgacgagcacctgctac 290 Query: 259 gtccgcttcggcgaccacctcgtctact 286 || | |||||| |||||||| ||||| Sbjct: 291 atctggttcggctcccacctcgcctact 318
>dbj|AK058266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A07, full insert sequence Length = 743 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 334 ctctccggcatccaggccaagaagctcttcctctgggtctccgtctccggcatcgtcgcc 393 |||||||| |||||||| ||||| ||||| ||||||||||| || || |||||||||| Sbjct: 358 ctctccgggatccaggcgcagaagttcttcgtctgggtctccatcaccaccatcgtcgcc 417 Query: 394 caccccgacgagggcaccctcgagttccaggtcggcttcgtctccgagg 442 ||||||||| |||||||| |||||||| || || ||| ||||||||| Sbjct: 418 caccccgaccagggcaccgccgagttccgggcggggttcatctccgagg 466 Score = 79.8 bits (40), Expect = 7e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 139 gcgaacgacctgctccccaagtacggcctcccgagggggctgatcccggactcggtcagc 198 ||||||||||| ||||| |||||||||||||| |||||||||||||||| || || Sbjct: 163 gcgaacgacctcctcccggagtacggcctcccgcgggggctgatcccggagacgatcgcg 222 Query: 199 tcctacaccttcgacgaggcgaccggcgacttcgagatccacctcgcgggcacctgctac 258 ||||||||||||||| | | || || ||||||||||||| || || ||||||||||| Sbjct: 223 tcctacaccttcgacaacgacacgggggacttcgagatccggctgacgagcacctgctac 282 Query: 259 gtccgcttcggcgaccacctcgtctact 286 || | |||||| |||||||| ||||| Sbjct: 283 atctggttcggctcccacctcgcctact 310
>gb|AC091470.16| Mus musculus chromosome 3, clone RP23-237K2, complete sequence Length = 141824 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 302 gcggctgcctctccaagggcagg 324 ||||||||||||||||||||||| Sbjct: 92475 gcggctgcctctccaagggcagg 92453
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 198 ctcctacaccttcgacgaggcgaccggcgacttc 231 |||||||||| ||||||| || |||||||||||| Sbjct: 105781 ctcctacaccctcgacgacgccaccggcgacttc 105814
>ref|XM_654969.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2457.2), mRNA Length = 2079 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 323 ggatcgccggcctctccggcat 344 |||||||||||||||||||||| Sbjct: 410 ggatcgccggcctctccggcat 431
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 198 ctcctacaccttcgacgaggcgaccggcgacttc 231 |||||||||| ||||||| || |||||||||||| Sbjct: 17161646 ctcctacaccctcgacgacgccaccggcgacttc 17161679
>dbj|AK101894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070O22, full insert sequence Length = 930 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 198 ctcctacaccttcgacgaggcgaccggcgacttc 231 |||||||||| ||||||| || |||||||||||| Sbjct: 247 ctcctacaccctcgacgacgccaccggcgacttc 280
>gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-287D23, complete sequence Length = 214292 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aaaccagagcagagcagagaa 39 ||||||||||||||||||||| Sbjct: 41030 aaaccagagcagagcagagaa 41050
>gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete sequence Length = 123800 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 cagagcagagcagagaatccc 43 ||||||||||||||||||||| Sbjct: 17490 cagagcagagcagagaatccc 17470
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 cggcctctccggcatccaggc 350 ||||||||||||||||||||| Sbjct: 3289779 cggcctctccggcatccaggc 3289799
>gb|AY549203.1| Streptomyces tubercidicus cytochrome P450 monooxygenase CYP105B2 (cyp229) and ferredoxin (fd229) genes, complete cds Length = 2171 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccgcttcggcgaccacctcg 280 |||||||||||||||||||| Sbjct: 265 ccgcttcggcgaccacctcg 246
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gcgcggcgaacgacctgctc 153 |||||||||||||||||||| Sbjct: 88642 gcgcggcgaacgacctgctc 88623
>gb|AE010391.1| Methanopyrus kandleri AV19 section 90 of 157 of the complete genome Length = 10895 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggcgaccggcgacttcgaga 235 |||||||||||||||||||| Sbjct: 4416 ggcgaccggcgacttcgaga 4397
>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene cluster, complete sequence Length = 84868 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 gaacggcgcggcgaacgacctgct 152 ||||||||||| |||||||||||| Sbjct: 73087 gaacggcgcggtgaacgacctgct 73110
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 atcgtcgcccaccccgacga 404 |||||||||||||||||||| Sbjct: 118729 atcgtcgcccaccccgacga 118710
>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster Length = 109528 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 cgcggcgaacgacctgctccccaa 158 ||||||||||||||||||| |||| Sbjct: 12627 cgcggcgaacgacctgctcgccaa 12650
>ref|XM_539325.2| PREDICTED: Canis familiaris obscurin (LOC482206), mRNA Length = 13404 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccgaggagctctccgcctcgctct 460 ||||||||||||||||||| |||| Sbjct: 10210 ccgaggagctctccgcctcactct 10187
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 ccctcgagttccaggtcggcttcg 433 |||||||||||||| ||||||||| Sbjct: 1665118 ccctcgagttccagttcggcttcg 1665095
>emb|X64558.1|PAAPRAPG Pseudomonas aeruginosa genes aprD, aprE, aprF, aprA, aprI for alkaline protease secretion apparatus, alkaline protease, inhibitor Length = 7413 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 agttccaggtcggcttcgtc 435 |||||||||||||||||||| Sbjct: 4537 agttccaggtcggcttcgtc 4518
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gcttcggcgaccacctcgtc 282 |||||||||||||||||||| Sbjct: 57328 gcttcggcgaccacctcgtc 57347
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 tcgcgggcacctgctacgtc 261 |||||||||||||||||||| Sbjct: 1391846 tcgcgggcacctgctacgtc 1391865
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 ctctccggcatccaggccaagaag 357 ||||||||||||||| |||||||| Sbjct: 480289 ctctccggcatccagaccaagaag 480312
>gb|AF004848.2| Pseudomonas fluorescens alkaline protease, protease inhibitor, zinc-protease transporter (aprD), zinc-protease transporter (aprE), and zinc-protease transporter (aprF) genes, complete cds Length = 7334 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 agttccaggtcggcttcgtc 435 |||||||||||||||||||| Sbjct: 7129 agttccaggtcggcttcgtc 7110
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gcgcggcgaacgacctgctc 153 |||||||||||||||||||| Sbjct: 19369416 gcgcggcgaacgacctgctc 19369397
>gb|AF195772.1|AF195772 Streptomyces netropsis SsgA (ssgA) gene, complete cds Length = 438 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tcgtctccgaggagctctcc 450 |||||||||||||||||||| Sbjct: 41 tcgtctccgaggagctctcc 60
>gb|AE004554.1| Pseudomonas aeruginosa PAO1, section 115 of 529 of the complete genome Length = 11588 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 agttccaggtcggcttcgtc 435 |||||||||||||||||||| Sbjct: 7231 agttccaggtcggcttcgtc 7212
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ttcgacgaggcgaccggcga 227 |||||||||||||||||||| Sbjct: 6682214 ttcgacgaggcgaccggcga 6682195 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 ccgaggagctctccgcctcg 456 |||||||||||||||||||| Sbjct: 1603279 ccgaggagctctccgcctcg 1603260
>gb|AE005065.1| Halobacterium sp. NRC-1 section 96 of 170 of the complete genome Length = 11034 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 201 ctacaccttcgacgaggcgaccggcgac 228 ||||||| ||||||| |||||||||||| Sbjct: 2673 ctacaccatcgacgacgcgaccggcgac 2646
>dbj|AK110881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G09, full insert sequence Length = 2047 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gcgcggcgaacgacctgctc 153 |||||||||||||||||||| Sbjct: 1190 gcgcggcgaacgacctgctc 1171
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tcgcgggcacctgctacgtc 261 |||||||||||||||||||| Sbjct: 4432567 tcgcgggcacctgctacgtc 4432548
>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1, ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and ORF19 Length = 86080 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 gaacggcgcggcgaacgacctgct 152 ||||||||||| |||||||||||| Sbjct: 73005 gaacggcgcggtgaacgacctgct 73028 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,487,148 Number of Sequences: 3902068 Number of extensions: 2487148 Number of successful extensions: 54108 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53314 Number of HSP's gapped (non-prelim): 774 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
