| Clone Name | bast75f01 |
|---|---|
| Clone Library Name | barley_pub |
>OLIG3_HUMAN (Q7RTU3) Oligodendrocyte transcription factor 3 (Oligo3) (Basic| helix-loop-helix domain-containing class B protein 7) Length = 272 Score = 33.5 bits (75), Expect = 0.21 Identities = 38/132 (28%), Positives = 50/132 (37%), Gaps = 2/132 (1%) Frame = +3 Query: 6 HHSAYRCPSRSEGTGERGSDRPAMRKTVVGSAST--GGGWPCGLNLNVVFLLSMVATNLL 179 HHSA+ C GT + PA V GG G + + S+ A + Sbjct: 155 HHSAFHC-----GTVGHSAGHPAHAANSVHPVHPILGGALSSGNASSPLSAASLPAIGTI 209 Query: 180 SLYHLSIRASPTTPALQSGSDFDQQQVLQQLSAIRATVSHLRSATPPPPPELVLYSRLAP 359 H ++A T PALQ GS F L T+ + PPPP L S A Sbjct: 210 RPPHSLLKAPSTPPALQLGSGFQHWAGL----PCPCTICQM-----PPPPHLSALS-TAN 259 Query: 360 VASACSAHPDLL 395 +A + DLL Sbjct: 260 MARLSAESKDLL 271
>CIC_DROME (Q9U1H0) Putative transcription factor capicua (Protein fettucine)| Length = 1403 Score = 33.5 bits (75), Expect = 0.21 Identities = 24/99 (24%), Positives = 38/99 (38%) Frame = +3 Query: 102 STGGGWPCGLNLNVVFLLSMVATNLLSLYHLSIRASPTTPALQSGSDFDQQQVLQQLSAI 281 + W G N N + AT+ + L + +P + + + QQQ LQQ Sbjct: 112 NNNSNWEVGSNSNTHVAATAAATSTVGAQPLPPQTTPVSLVMHAPPP--QQQPLQQ---- 165 Query: 282 RATVSHLRSATPPPPPELVLYSRLAPVASACSAHPDLLH 398 H PPPPP + P + + S+H + H Sbjct: 166 ----QHHHHQPPPPPPASLPAPSAPPTSGSSSSHNSVGH 200
>NQRA_NEIMB (Q9K0M3) Na(+)-translocating NADH-quinone reductase subunit A (EC| 1.6.5.-) (Na(+)-translocating NQR subunit A) (Na(+)-NQR subunit A) (NQR complex subunit A) (NQR-1 subunit A) Length = 447 Score = 32.3 bits (72), Expect = 0.47 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = -2 Query: 145 TTLRFRPHGQPPPVEAEPTTVFLIAGRSDPLSPVPSL 35 T LR RP + P V+AEP +F+ A ++PL+ P++ Sbjct: 129 TALRTRPFSKIPAVDAEPFAIFVNAMDTNPLAADPTV 165
>NQRA_HAEIN (P43955) Na(+)-translocating NADH-quinone reductase subunit A (EC| 1.6.5.-) (Na(+)-translocating NQR subunit A) (Na(+)-NQR subunit A) (NQR complex subunit A) (NQR-1 subunit A) Length = 447 Score = 32.0 bits (71), Expect = 0.61 Identities = 14/37 (37%), Positives = 25/37 (67%) Frame = -2 Query: 145 TTLRFRPHGQPPPVEAEPTTVFLIAGRSDPLSPVPSL 35 T LR RP + P +E+E +++F+ A ++PL+ PS+ Sbjct: 129 TALRTRPFSKVPSIESEASSIFVNAMDTNPLAADPSV 165
>NQRA_NEIMA (Q9JVP8) Na(+)-translocating NADH-quinone reductase subunit A (EC| 1.6.5.-) (Na(+)-translocating NQR subunit A) (Na(+)-NQR subunit A) (NQR complex subunit A) (NQR-1 subunit A) Length = 447 Score = 31.6 bits (70), Expect = 0.80 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -2 Query: 145 TTLRFRPHGQPPPVEAEPTTVFLIAGRSDPLSPVP 41 T LR RP + P V+AEP +F+ A ++PL+ P Sbjct: 129 TALRTRPFSKIPAVDAEPFAIFVNAMDTNPLAADP 163
>CN004_HUMAN (Q9H1B7) Protein C14orf4| Length = 796 Score = 30.4 bits (67), Expect = 1.8 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 15/85 (17%) Frame = +3 Query: 201 RASPTTP-----ALQSGSDFDQQQ-VLQQLSAIRATVS--------HLRSATPPPPPELV 338 +ASP P AL+ G + +QQ + Q A++ T+S H PPPPP L Sbjct: 545 KASPEPPDSAEGALKLGEEQQRQQWMANQSEALKLTMSAGGFAAPGHAAGGPPPPPPPLG 604 Query: 339 LYS-RLAPVASACSAHPDLLHRFMT 410 +S R P SA P + M+ Sbjct: 605 PHSNRTTPPESAPQNGPSPMAALMS 629
>NQRA_RHOBA (Q7UWS5) Na(+)-translocating NADH-quinone reductase subunit A (EC| 1.6.5.-) (Na(+)-translocating NQR subunit A) (Na(+)-NQR subunit A) (NQR complex subunit A) (NQR-1 subunit A) Length = 456 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = -2 Query: 145 TTLRFRPHGQPPPVEAEPTTVFLIAGRSDPLSPVPSL 35 + R RP G+ P +E+ P ++F+ A ++PL+ P++ Sbjct: 137 SAFRTRPFGKVPTIESRPHSIFVTAIDTNPLAADPAV 173
>CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog| Length = 775 Score = 30.0 bits (66), Expect = 2.3 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 15/85 (17%) Frame = +3 Query: 201 RASPTTP-----ALQSGSDFDQQQ-VLQQLSAIRATVS--------HLRSATPPPPPELV 338 +ASP P AL+ G + +QQ + Q A++ T+S H PPPPP L Sbjct: 524 KASPEPPDSAESALKLGEEQQRQQWMANQSEALKLTMSAGGFAAPGHSAGGPPPPPPPLG 583 Query: 339 LYS-RLAPVASACSAHPDLLHRFMT 410 +S R P SA P + M+ Sbjct: 584 PHSNRTTPPESAPQNGPSPMAALMS 608
>MPPB_ARATH (Q42290) Probable mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) Length = 531 Score = 30.0 bits (66), Expect = 2.3 Identities = 23/68 (33%), Positives = 31/68 (45%) Frame = +3 Query: 159 MVATNLLSLYHLSIRASPTTPALQSGSDFDQQQVLQQLSAIRATVSHLRSATPPPPPELV 338 M NLLSL S R T A +S S F + ++ A+ S +A PPPP L+ Sbjct: 1 MAMKNLLSLARRSQRRLFLTQATRSSSSFSA------IDSVPASASP--TALSPPPPHLM 52 Query: 339 LYSRLAPV 362 Y A + Sbjct: 53 PYDHAAEI 60
>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)| (Zona occludens 1 protein) (Tight junction protein 1) Length = 1745 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +3 Query: 309 ATPPPPPELVLYSRLAPVASACSAH 383 ATPPPPP YS+ AP S+ S H Sbjct: 1422 ATPPPPPLPSQYSQPAPPLSSSSLH 1446
>CAR14_HUMAN (Q9BXL6) Caspase recruitment domain-containing protein 14| (CARD-containing MAGUK protein 2) (Carma 2) Length = 1004 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = +3 Query: 249 QQQVLQQLSAI--RATVSHLRSATPPPPPELVLYSRLA 356 + Q+L LSA R V RS++P PP + LY R+A Sbjct: 452 ESQLLSDLSATSSRELVDSFRSSSPAPPSQQSLYKRVA 489
>RAIN_MOUSE (Q3U0S6) Ras-interacting protein 1 (Rain)| Length = 961 Score = 29.3 bits (64), Expect = 3.9 Identities = 21/79 (26%), Positives = 32/79 (40%) Frame = +3 Query: 180 SLYHLSIRASPTTPALQSGSDFDQQQVLQQLSAIRATVSHLRSATPPPPPELVLYSRLAP 359 S+Y+L+ T PAL + F L A L + P P L ++ Sbjct: 701 SVYYLTKTLYSTLPALLDSNPFTAGAELPGPGA------ELEAMPPGLRPTLGVFQAALE 754 Query: 360 VASACSAHPDLLHRFMTYV 416 + S C HPDL+ + Y+ Sbjct: 755 LTSQCELHPDLVSQTFGYL 773
>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3148 Score = 29.3 bits (64), Expect = 3.9 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 14/68 (20%) Frame = +3 Query: 231 SGSDFDQQQVLQQLSAIRATVS-----------HLRSATPPPPPELVLYSR---LAPVAS 368 SG Q+ L RATVS H PPP PELV+ + +A V S Sbjct: 2052 SGLAQRHQRFYSLLDRFRATVSDTSSPSTPVTSHPLDGDPPPAPELVIADKEWYVALVKS 2111 Query: 369 ACSAHPDL 392 C H D+ Sbjct: 2112 QCCLHGDV 2119
>POLS_SFV (P03315) Structural polyprotein (p130) [Contains: Capsid protein| (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike gly Length = 1253 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 198 IRASPTTPALQSGSDFDQQQVLQQLSAIRATVSHLRSATPPPPPE 332 ++A+P P + DF QQ+ Q +SA+ A + P PP+ Sbjct: 25 LQATPVAPVVP---DFQAQQMQQLISAVNALTMRQNAIAPARPPK 66
>TGIF2_MOUSE (Q8C0Y1) Homeobox protein TGIF2 (TGFB-induced factor 2)| (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2) Length = 237 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +3 Query: 210 PTTPALQSGSDFDQQQVLQQLSAIRATVSHLRSATPPPPPEL 335 P TP Q DF Q+L +++ RA L+ P PP L Sbjct: 184 PPTPPEQDKDDFSSFQLLVEVALQRAAEMELQKQQEPAPPLL 225
>TEAD3_CHICK (Q90701) Transcriptional enhancer factor TEF-5 (TEA domain family| member 3) (TEAD-3) (Cardiac-enriched TEA domain transcription factor 1) (DTEF-1) Length = 433 Score = 28.9 bits (63), Expect = 5.2 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +3 Query: 315 PPPPPELVLYSRLAPVASACSAHP 386 PP PP L Y LAP+ A SA P Sbjct: 188 PPMPPSLASYEPLAPLPPAASAVP 211
>GCYA1_BOVIN (P19687) Guanylate cyclase soluble subunit alpha-1 (EC 4.6.1.2)| (GCS-alpha-1) (Soluble guanylate cyclase large subunit) Length = 691 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +3 Query: 297 HLRSATPPPPPELVLYSRLAPVASACSAHP 386 H+RSA P PPP + S + P + C P Sbjct: 259 HIRSARPHPPPGKPVSSLVIPASLFCKTFP 288
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 11/54 (20%) Frame = +3 Query: 252 QQVLQQLSAIRATVSHLRSATPPP-----------PPELVLYSRLAPVASACSA 380 QQ+LQQ I H+++ TPPP PP+L APV A S+ Sbjct: 413 QQILQQYQQIIQPPPHIQATTPPPGIPPPGVPQGIPPQLT----AAPVPPASSS 462
>BMP3_HUMAN (P12645) Bone morphogenetic protein 3 precursor (BMP-3)| (Osteogenin) (BMP-3A) Length = 472 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 69 PAMRKTVVGSASTGGGWPCGLNLNVVFLLSMVATNLLSLY--HLSIRASPTTPALQSGSD 242 P +RK V G + GGG L V+ ++L LY + +++A+ T +L+ GS Sbjct: 30 PELRKAVPGDRTAGGGPDSELQPQ-----DKVSEHMLRLYDRYSTVQAARTPGSLEGGSQ 84 Query: 243 FDQQQVLQQLSAIRA 287 + ++L++ + +R+ Sbjct: 85 PWRPRLLREGNTVRS 99
>PTPA1_NEUCR (Q7S6M5) Serine/threonine-protein phosphatase 2A activator 1 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1) (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl phosphatase activator 1) Length = 617 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +3 Query: 198 IRASPTTPALQSGSDFDQQQVLQQLSAIRATVSHLRSATPPPPPELVLYSRL 353 I+ S T + +D QQQ QQ +A + PPPPP L ++L Sbjct: 78 IKKSTTVSTSEPTTDGQQQQQQQQQRQQKAEEVDEQQQPPPPPPTDALAAKL 129
>SAS_DROME (Q04164) Putative epidermal cell surface receptor precursor (Stranded| at second protein) Length = 1693 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -2 Query: 127 PHGQPPPVEAEPTTVFLIAGRSDPLSPV 44 P G+PPPV + +F I G P PV Sbjct: 1083 PQGKPPPVPTSQSDLFNILGAEQPGHPV 1110
>TAMI_POVHA (P03079) Middle T antigen| Length = 401 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = +3 Query: 216 TPALQSGSDFDQQQVLQQLSAIRATVSHLRSATPP----PPPELVLYSRLAPV 362 T +G F +L + S + + H + +PP PPP L L+ APV Sbjct: 228 TSRRNTGKSFSLSGMLMRTSPAKKSYHHQKMNSPPGIPIPPPPLFLFPVTAPV 280
>RAIN_HUMAN (Q5U651) Ras-interacting protein 1 (Rain)| Length = 963 Score = 28.5 bits (62), Expect = 6.7 Identities = 21/79 (26%), Positives = 32/79 (40%) Frame = +3 Query: 180 SLYHLSIRASPTTPALQSGSDFDQQQVLQQLSAIRATVSHLRSATPPPPPELVLYSRLAP 359 S+Y+L+ T PAL + F L A L + P P L ++ Sbjct: 703 SVYYLTKTLYSTLPALLDSNPFTAGAELPGPGA------ELGAMPPGLRPTLGVFQAALE 756 Query: 360 VASACSAHPDLLHRFMTYV 416 + S C HPDL+ + Y+ Sbjct: 757 LTSQCELHPDLVSQTFGYL 775
>H15_DROME (Q94890) T-box protein H15| Length = 660 Score = 23.5 bits (49), Expect(2) = 8.3 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +3 Query: 312 TPPPPPELVLYSRLAPVASACSAHPDLLHR 401 TPPP + + P +S SA PDL R Sbjct: 600 TPPPSMAVAPPAPATPTSSCGSASPDLRAR 629 Score = 23.1 bits (48), Expect(2) = 8.3 Identities = 8/9 (88%), Positives = 8/9 (88%) Frame = +3 Query: 303 RSATPPPPP 329 RSA PPPPP Sbjct: 548 RSAAPPPPP 556
>YOQ5_CAEEL (P34643) Hypothetical protein ZK512.5| Length = 1232 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +3 Query: 204 ASPTTPALQSGSD-FDQQQVLQQLSAIRATVSHLRSATPPPP---PELVLYSRLA 356 A+PT P++ + VLQQ + +A++ + ++ PP P PEL L R A Sbjct: 1025 ANPTAPSVPTPPPAVSSAPVLQQATLGQASIPNAKTTAPPVPQKQPELALNERKA 1079
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +3 Query: 210 PTTPALQSGSDFDQQQVLQQLSAIRATVSHLRSATPPPPP 329 P P + G QQ QQ S ++ S+ TPPP P Sbjct: 562 PPHPGMPGGPPQQQQSQQQQASNSASSASNSPQQTPPPAP 601
>NGB2_ONCMY (P59743) Neuroglobin 2| Length = 159 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = +3 Query: 174 LLSLYHLSIRASPTTPALQSGSDFDQQQVLQQLSAIRATVSHL 302 LL+L+H + SPT L S D V + + I A VSHL Sbjct: 41 LLNLFHYNTNCSPTQDCLSSPEFLD--HVTKVMLVIDAAVSHL 81
>CCNA_CHLVR (P51986) G2/mitotic-specific cyclin-A (Fragment)| Length = 420 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Frame = +3 Query: 132 NLNVVFLLSMVATNLLSLYHLSIRASPTTPALQSGSDFDQQQVLQQLSAIRATVSHLRSA 311 +++V + SM+A + + + + + + P TP L+ S ++ Q + L+ I + HL ++ Sbjct: 333 DISVKYAPSMIAASSICVANHMLNSIPWTPTLEFYSGYNIQDLRSCLNEIH--LLHLAAS 390 Query: 312 TPP--------PPPELVLYSRLAPVASAC 374 T P P+ S L P+ C Sbjct: 391 TNPQQAIQQKYKSPKFGCVSSLVPLEMPC 419
>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)| Length = 1412 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Frame = +3 Query: 216 TPALQSGSDFD---QQQVLQQLSAIRATVSHLRSATPPPPPEL 335 TP + S S + QQQ QQ S++ +V +R PPPPP++ Sbjct: 374 TPVVSSSSSSNMHHQQQQQQQQSSLGNSV--MRPPPPPPPPKV 414
>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)| Length = 543 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 127 PHGQPPPVEAEPTTVFLIAGRSDPLSPVPSLREGQ 23 PH P A+PT V G DP + +P + GQ Sbjct: 326 PHTSGPAGAADPTAVLPSTGAPDPTAVMPPVPPGQ 360
>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Ufd2a) Length = 1173 Score = 28.1 bits (61), Expect = 8.8 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -2 Query: 181 ESRLVATMESRNTTLRFRPHGQPPPVEAE-PTTVFLIAGRSDPLSPVPSLR 32 E+R+ ATME N L QPP E + PT F + + LS +PS R Sbjct: 595 ETRINATMEDVNERLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCR 645
>GGPPS_GIBFU (Q92236) Geranylgeranyl pyrophosphate synthetase (GGPP synthetase)| (GGPPSase) (Geranylgeranyl diphosphate synthase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5 Length = 418 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = +3 Query: 195 SIRASPTTPALQ---SGSDFDQQQVLQQLSAIRATVSHLRSATPPPPPE 332 S+ A+PT P L+ G Q+Q+ + A +++ PPP PE Sbjct: 59 SLNATPTKPVLRPVPEGDWLSQKQLSPRAQMSNAGYGVMQAPNPPPDPE 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,478,561 Number of Sequences: 219361 Number of extensions: 561972 Number of successful extensions: 3587 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3531 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)