ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 pre... 88 7e-19
2FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p... 56 4e-08
3FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 pre... 54 2e-07
4FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 pre... 44 2e-04
5BGH3_HUMAN (Q15582) Transforming growth factor-beta-induced prot... 32 0.64
6YH35_SYNP2 (O33752) Hypothetical protein sll1735 homolog 30 1.9

>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor|
          Length = 424

 Score = 87.8 bits (216), Expect(2) = 7e-19
 Identities = 40/81 (49%), Positives = 54/81 (66%)
 Frame = +2

Query: 155 NITAAMAKGGCKAFAALVAASPDAHSTFQSAGDGGVTAFCPSDDAVRSFMPRYKNLTADG 334
           N+T  M+  GCK FA  +  +P A  T+Q + +GG+T FCP DDA++ F+P+YKNLTA  
Sbjct: 186 NLTGIMSAHGCKVFAETLLTNPGASKTYQESLEGGMTVFCPGDDAMKGFLPKYKNLTAPK 245

Query: 335 KASLLLFHAVPVYYAPRSLKS 397
           K + L F AVP YY+   LKS
Sbjct: 246 KEAFLDFLAVPTYYSMAMLKS 266



 Score = 24.3 bits (51), Expect(2) = 7e-19
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 397 NNGVMNTLATD 429
           NNG MNTLATD
Sbjct: 267 NNGPMNTLATD 277



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>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = +2

Query: 155 NITAAMAKGGCKAFAALVAASPDAHSTFQSAGDGGVTAFCPSDDAVRS-FMPRYKNLTAD 331
           NIT  + K GCK FA L+ +S     TF+S  + G+T F PSD+A ++  +P   NLT  
Sbjct: 190 NITGLLEKAGCKTFANLLVSS-GVIKTFESTVEKGLTVFAPSDEAFKARGVPDLTNLTQA 248

Query: 332 GKASLLLFHAVPVYYAPRSLKS 397
              SLL +HA+  Y    SLK+
Sbjct: 249 EVVSLLEYHALAEYKPKGSLKT 270



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>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = +2

Query: 155 NITAAMAKGGCKAFAALVAASPDAHSTFQSAGDGGVTAFCPSDDAVRS-FMPRYKNLTAD 331
           NIT  + K GCK FA L+ +S     T++SA + G+T F PSD+A ++  +P    LT  
Sbjct: 189 NITGLLEKAGCKTFANLLVSS-GVLKTYESAVEKGLTVFAPSDEAFKAEGVPDLTKLTQA 247

Query: 332 GKASLLLFHAVPVYYAPRSLKS 397
              SLL +HA+  Y    SLK+
Sbjct: 248 EVVSLLEYHALAEYKPKGSLKT 269



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>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor|
          Length = 254

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +2

Query: 233 TFQSAGDG---GVTAFCPSDDAVRSFM-PRYKNLTADGKASLLLFHAVPVYYAPRSLKST 400
           TFQ+  +    G+T F P DDA ++   P   NLT D    L+LFHA+P YY+    K+ 
Sbjct: 72  TFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNL 131

Query: 401 TAS 409
           + S
Sbjct: 132 SQS 134



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>BGH3_HUMAN (Q15582) Transforming growth factor-beta-induced protein ig-h3|
           precursor (Beta ig-h3) (Kerato-epithelin)
           (RGD-containing collagen-associated protein) (RGD-CAP)
          Length = 683

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 182 GCKAFAALVAASPDAHSTFQSAGDGGVTAFCPSDDAVRSFMPRYKN-LTADGK--ASLLL 352
           G   F+ LVAA   A  T     +G  T F P+++A R+  PR ++ L  D K  A++L 
Sbjct: 511 GDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILK 570

Query: 353 FH 358
           +H
Sbjct: 571 YH 572



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>YH35_SYNP2 (O33752) Hypothetical protein sll1735 homolog|
          Length = 133

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 188 KAFAALVAASPDAHSTFQSAGDGGVTAFCPSDDAVRSFMP 307
           + F+ LVAA   A      AG+G  T F P+DDA     P
Sbjct: 12  EGFSTLVAAVQAAGLVETLAGEGDFTVFAPNDDAFAKLPP 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,151,721
Number of Sequences: 219361
Number of extensions: 522018
Number of successful extensions: 1853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1846
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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