ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPRI_DROME (Q8MQW8) Protein sprint (SH2 poly-proline-containing ... 29 5.8
2HGFL_HUMAN (P26927) Hepatocyte growth factor-like protein precur... 28 9.9
3ZGPAT_MOUSE (Q8VDM1) Zinc finger CCCH-type with G patch domain p... 28 9.9
4STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for... 28 9.9

>SPRI_DROME (Q8MQW8) Protein sprint (SH2 poly-proline-containing Ras-interactor|
            protein)
          Length = 1790

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 85   GLQLDQLELPSHQLPPVRT--SATAADDEDGYATPTSEAK 198
            GL L  L   S Q+PPV    S TAA+D+ G  TPT+E +
Sbjct: 1020 GLLLPNL---SGQVPPVAMTKSMTAAEDDGGDTTPTAEGQ 1056



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>HGFL_HUMAN (P26927) Hepatocyte growth factor-like protein precursor|
           (Macrophage stimulatory protein) (MSP)
           (Macrophage-stimulating protein) [Contains: Hepatocyte
           growth factor-like protein alpha chain; Hepatocyte
           growth factor-like protein beta chain]
          Length = 711

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
 Frame = +1

Query: 271 QHCY------YRGRRRRCNSGPVQARYWTVAVPHDLAAVFVAQRXXXXXXXLCRPPAG 426
           Q CY      YRG   +   G VQ + W+   PH     F ++         CR P G
Sbjct: 368 QDCYHGAGEQYRGTVSKTRKG-VQCQRWSAETPHKPQFTFTSEPHAQLEENFCRNPDG 424



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>ZGPAT_MOUSE (Q8VDM1) Zinc finger CCCH-type with G patch domain protein|
          Length = 511

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 124 LPPVRTSATAADDED-GYATPTSEAKVLRAPSV 219
           LPP+RT AT + D D G A+ +S A+V+   +V
Sbjct: 265 LPPLRTEATESSDSDTGDASDSSYARVVEPSTV 297



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>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)|
            [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan
            receptor for endocytosis)] (Fragment)
          Length = 1431

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 24/80 (30%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
 Frame = -3

Query: 473  CMHGR----CQPTTCTRIFLPAGGRHSEL-EGEDGR----CATNTAARSCGTATVQ*RAC 321
            C HGR    CQP +C+         H +  EG  G     C T   A SC T T     C
Sbjct: 865  CWHGRFGPDCQPRSCSE--------HGQCDEGITGSGECLCETGWTAASCDTPTAVFAVC 916

Query: 320  TGPLLHXXXXXXX*QCCCFL 261
            T              C C L
Sbjct: 917  TPACSVHATCTENNTCVCNL 936


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,410,695
Number of Sequences: 219361
Number of extensions: 713722
Number of successful extensions: 2325
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2324
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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