Clone Information

BLAST Search Result

Clone Name	bast75d11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_188907.2\| Oryza sativa (japonica cultivar-group), mRNA	167	4e-38
2	ref\|XM_507213.1\| PREDICTED Oryza sativa (japonica cultivar-group...	167	4e-38
3	dbj\|AK066851.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	167	4e-38
4	dbj\|AK058590.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	167	4e-38
5	gb\|AY108182.1\| Zea mays PCO085001 mRNA sequence	167	4e-38
6	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	94	5e-16
7	dbj\|AP004675.3\| Oryza sativa (japonica cultivar-group) genomic D...	94	5e-16
8	dbj\|AP005443.3\| Oryza sativa (japonica cultivar-group) genomic D...	94	5e-16
9	gb\|AE012374.1\| Xanthomonas campestris pv. campestris str. ATCC 3...	50	0.006
10	gb\|AE016816.1\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	50	0.006
11	gb\|CP000050.1\| Xanthomonas campestris pv. campestris str. 8004, ...	50	0.006
12	ref\|NM_208626.1\| Eremothecium gossypii ACL131Wp (ACL131W), mRNA	50	0.006
13	emb\|X76120.1\|PSTRXA Penicillum chrysogenum trxA gene, partial	46	0.10
14	ref\|NM_185032.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.40
15	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	44	0.40
16	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	44	0.40
17	emb\|CR726234.2\|CNS0GNB4 Tetraodon nigroviridis full-length cDNA	44	0.40
18	emb\|CR715565.2\|CNS0GF2X Tetraodon nigroviridis full-length cDNA	44	0.40
19	emb\|AJ299018.1\|OMY299018 Oncorhynchus mykiss mRNA for cyclooxyge...	44	0.40
20	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.40
21	gb\|AC104321.7\| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genom...	44	0.40
22	gb\|AF158374.1\|AF158374 Salvelinus fontinalis prostaglandin endop...	44	0.40
23	dbj\|AK062383.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.40
24	gb\|AY232202.1\| Drosophila yakuba clone yak-ad_thioredoxin mRNA s...	42	1.6
25	ref\|XM_504314.1\| Yarrowia lipolytica CLIB122, YALI0E23540g predi...	42	1.6
26	gb\|AY184796.1\| Chlamydomonas reinhardtii thioredoxin y (TRXy) mR...	42	1.6
27	emb\|CR382131.1\| Yarrowia lipolytica chromosome E of strain CLIB ...	42	1.6
28	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	42	1.6
29	gb\|CP000103.1\| Nitrosospira multiformis ATCC 25196, complete genome	42	1.6
30	gb\|AC120887.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
31	gb\|AC120886.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
32	gb\|AY180169.2\| Homo sapiens kinesin light chain 1R (KNS2) mRNA, ...	40	6.2
33	gb\|AY206871.1\| Chlamys farreri heat shock protein 70 (hsp70) mRN...	40	6.2
34	ref\|XM_445713.1\| Candida glabrata CBS138, CAGL0E00583g partial mRNA	40	6.2
35	gb\|DQ466080.1\| Chlamys farreri HSP70 gene, complete cds	40	6.2
36	gb\|AC115891.7\| Mus musculus chromosome 10, clone RP24-421G4, com...	40	6.2
37	ref\|XM_783330.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	6.2
38	emb\|CR380951.1\| Candida glabrata strain CBS138 chromosome E comp...	40	6.2
39	emb\|AL939113.1\|SCO939113 Streptomyces coelicolor A3(2) complete ...	40	6.2
40	emb\|AJ010449.1\|AMY010449 Alopecurus myosuroides mRNA for glutath...	40	6.2
41	emb\|AJ010448.1\|AMY010448 Alopecurus myosuroides mRNA for glutath...	40	6.2
42	dbj\|AP007162.1\| Aspergillus oryzae RIB40 genomic DNA, SC102	40	6.2
43	gb\|AC021120.6\| Homo sapiens BAC clone RP11-347O8 from 4, complet...	40	6.2
44	gb\|AF305205.1\|AF305205 Triticum aestivum cytosolic acetyl-CoA ca...	40	6.2
45	gb\|AF037222.1\| Human DNA from chromosome 14-specific cosmid cont...	40	6.2
46	tpg\|BK001171.2\| TPA: TPA_exp: Homo sapiens kinesin light chain 1...	40	6.2
47	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
48	dbj\|AK024714.1\| Homo sapiens cDNA: FLJ21061 fis, clone CAS01010	40	6.2
49	gb\|AF213884.1\|AF213884S1 Homo sapiens nuclear factor of kappa li...	40	6.2
50	emb\|AL049840.8\|CNS0000K Human chromosome 14 DNA sequence BAC R-7...	40	6.2
51	gb\|AF039403.1\|AF039403 Gallus gallus paired box protein (Pax-1) ...	40	6.2
52	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	40	6.2
53	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2

>ref|NM_188907.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 686

 Score =  167 bits (84), Expect = 4e-38
 Identities = 167/194 (86%), Gaps = 3/194 (1%)
 Strand = Plus / Plus

                                                                       
Query: 235 cgttcgacggaa---cgccgcggaggcctacgtcccgggctccggcaagtacatcgcgcc 291
           ||||||||||||   ||| || ||| |||||||||| |||||||||||||||||||| ||
Sbjct: 253 cgttcgacggaatgccgcagccgagacctacgtcccaggctccggcaagtacatcgcccc 312

                                                                       
Query: 292 ggactacctcgtgaggaaggtgtcggccagggagctggaggagctcgtcagggggcagcg 351
           |||||||||||||| ||||||| |||||| ||| ||||||||||| || |||||| || |
Sbjct: 313 ggactacctcgtgaagaaggtgacggccaaggaactggaggagctggtgaggggggagag 372

                                                                       
Query: 352 gagggtgccgctcgtcgtggacttctacgccacctggtgcgggccgtgcgtgctcatggc 411
           || |||||| ||| ||||||| |||||||| || |||||||| || ||||| ||||||||
Sbjct: 373 gaaggtgcccctcatcgtggatttctacgcgacgtggtgcggaccctgcgtcctcatggc 432

                         
Query: 412 gcaggacgtcgaga 425
            |||||| ||||||
Sbjct: 433 ccaggacatcgaga 446

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>ref|XM_507213.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0011E04.120
           mRNA
          Length = 819

 Score =  167 bits (84), Expect = 4e-38
 Identities = 167/194 (86%), Gaps = 3/194 (1%)
 Strand = Plus / Plus

                                                                       
Query: 235 cgttcgacggaa---cgccgcggaggcctacgtcccgggctccggcaagtacatcgcgcc 291
           ||||||||||||   ||| || ||| |||||||||| |||||||||||||||||||| ||
Sbjct: 229 cgttcgacggaatgccgcagccgagacctacgtcccaggctccggcaagtacatcgcccc 288

                                                                       
Query: 292 ggactacctcgtgaggaaggtgtcggccagggagctggaggagctcgtcagggggcagcg 351
           |||||||||||||| ||||||| |||||| ||| ||||||||||| || |||||| || |
Sbjct: 289 ggactacctcgtgaagaaggtgacggccaaggaactggaggagctggtgaggggggagag 348

                                                                       
Query: 352 gagggtgccgctcgtcgtggacttctacgccacctggtgcgggccgtgcgtgctcatggc 411
           || |||||| ||| ||||||| |||||||| || |||||||| || ||||| ||||||||
Sbjct: 349 gaaggtgcccctcatcgtggatttctacgcgacgtggtgcggaccctgcgtcctcatggc 408

                         
Query: 412 gcaggacgtcgaga 425
            |||||| ||||||
Sbjct: 409 ccaggacatcgaga 422

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>dbj|AK066851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082H01, full
           insert sequence
          Length = 819

 Score =  167 bits (84), Expect = 4e-38
 Identities = 167/194 (86%), Gaps = 3/194 (1%)
 Strand = Plus / Plus

                                                                       
Query: 235 cgttcgacggaa---cgccgcggaggcctacgtcccgggctccggcaagtacatcgcgcc 291
           ||||||||||||   ||| || ||| |||||||||| |||||||||||||||||||| ||
Sbjct: 229 cgttcgacggaatgccgcagccgagacctacgtcccaggctccggcaagtacatcgcccc 288

                                                                       
Query: 292 ggactacctcgtgaggaaggtgtcggccagggagctggaggagctcgtcagggggcagcg 351
           |||||||||||||| ||||||| |||||| ||| ||||||||||| || |||||| || |
Sbjct: 289 ggactacctcgtgaagaaggtgacggccaaggaactggaggagctggtgaggggggagag 348

                                                                       
Query: 352 gagggtgccgctcgtcgtggacttctacgccacctggtgcgggccgtgcgtgctcatggc 411
           || |||||| ||| ||||||| |||||||| || |||||||| || ||||| ||||||||
Sbjct: 349 gaaggtgcccctcatcgtggatttctacgcgacgtggtgcggaccctgcgtcctcatggc 408

                         
Query: 412 gcaggacgtcgaga 425
            |||||| ||||||
Sbjct: 409 ccaggacatcgaga 422

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>dbj|AK058590.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G07, full
           insert sequence
          Length = 686

 Score =  167 bits (84), Expect = 4e-38
 Identities = 167/194 (86%), Gaps = 3/194 (1%)
 Strand = Plus / Plus

                                                                       
Query: 235 cgttcgacggaa---cgccgcggaggcctacgtcccgggctccggcaagtacatcgcgcc 291
           ||||||||||||   ||| || ||| |||||||||| |||||||||||||||||||| ||
Sbjct: 253 cgttcgacggaatgccgcagccgagacctacgtcccaggctccggcaagtacatcgcccc 312

                                                                       
Query: 292 ggactacctcgtgaggaaggtgtcggccagggagctggaggagctcgtcagggggcagcg 351
           |||||||||||||| ||||||| |||||| ||| ||||||||||| || |||||| || |
Sbjct: 313 ggactacctcgtgaagaaggtgacggccaaggaactggaggagctggtgaggggggagag 372

                                                                       
Query: 352 gagggtgccgctcgtcgtggacttctacgccacctggtgcgggccgtgcgtgctcatggc 411
           || |||||| ||| ||||||| |||||||| || |||||||| || ||||| ||||||||
Sbjct: 373 gaaggtgcccctcatcgtggatttctacgcgacgtggtgcggaccctgcgtcctcatggc 432

                         
Query: 412 gcaggacgtcgaga 425
            |||||| ||||||
Sbjct: 433 ccaggacatcgaga 446

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>gb|AY108182.1| Zea mays PCO085001 mRNA sequence
          Length = 935

 Score =  167 bits (84), Expect = 4e-38
 Identities = 165/192 (85%)
 Strand = Plus / Plus

                                                                       
Query: 258 cctacgtcccgggctccggcaagtacatcgcgccggactacctcgtgaggaaggtgtcgg 317
           ||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct: 278 cctacgtgccgggctctggcaagtacatagcgccggactacctcgtgaagaaggtgtcag 337

                                                                       
Query: 318 ccagggagctggaggagctcgtcagggggcagcggagggtgccgctcgtcgtggacttct 377
           ||  |||| || ||||||| || ||||||||| ||| |||||||||| |||| |||||||
Sbjct: 338 ccgaggaggtgcaggagctggtgagggggcagaggaaggtgccgctcatcgttgacttct 397

                                                                       
Query: 378 acgccacctggtgcgggccgtgcgtgctcatggcgcaggacgtcgagacgctcgcggtcg 437
           |||| |||||||||||||| || || |  |||||||||||| |||||| ||| || || |
Sbjct: 398 acgcgacctggtgcgggccctgtgttcagatggcgcaggacatcgagatgcttgcagttg 457

                       
Query: 438 agtacgaggaca 449
           |||| |||||||
Sbjct: 458 agtatgaggaca 469

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 101/119 (84%)
 Strand = Plus / Minus

                                                                            
Query: 307      gaaggtgtcggccagggagctggaggagctcgtcagggggcagcggagggtgccgctcgt 366
                ||||||| |||||| ||| ||||||||||| || |||||| || ||| |||||| ||| |
Sbjct: 17812813 gaaggtgacggccaaggaactggaggagctggtgaggggggagaggaaggtgcccctcat 17812754

                                                                           
Query: 367      cgtggacttctacgccacctggtgcgggccgtgcgtgctcatggcgcaggacgtcgaga 425
                |||||| |||||||| || |||||||| || ||||| |||||||| |||||| ||||||
Sbjct: 17812753 cgtggatttctacgcgacgtggtgcggaccctgcgtcctcatggcccaggacatcgaga 17812695



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/73 (89%), Gaps = 3/73 (4%)
 Strand = Plus / Minus

                                                                            
Query: 235      cgttcgacggaa---cgccgcggaggcctacgtcccgggctccggcaagtacatcgcgcc 291
                ||||||||||||   ||| || ||| |||||||||| |||||||||||||||||||| ||
Sbjct: 17813017 cgttcgacggaatgccgcagccgagacctacgtcccaggctccggcaagtacatcgcccc 17812958

                             
Query: 292      ggactacctcgtg 304
                |||||||||||||
Sbjct: 17812957 ggactacctcgtg 17812945

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>dbj|AP004675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0709D11
          Length = 146856

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 101/119 (84%)
 Strand = Plus / Minus

                                                                         
Query: 307   gaaggtgtcggccagggagctggaggagctcgtcagggggcagcggagggtgccgctcgt 366
             ||||||| |||||| ||| ||||||||||| || |||||| || ||| |||||| ||| |
Sbjct: 34319 gaaggtgacggccaaggaactggaggagctggtgaggggggagaggaaggtgcccctcat 34260

                                                                        
Query: 367   cgtggacttctacgccacctggtgcgggccgtgcgtgctcatggcgcaggacgtcgaga 425
             |||||| |||||||| || |||||||| || ||||| |||||||| |||||| ||||||
Sbjct: 34259 cgtggatttctacgcgacgtggtgcggaccctgcgtcctcatggcccaggacatcgaga 34201



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/73 (89%), Gaps = 3/73 (4%)
 Strand = Plus / Minus

                                                                         
Query: 235   cgttcgacggaa---cgccgcggaggcctacgtcccgggctccggcaagtacatcgcgcc 291
             ||||||||||||   ||| || ||| |||||||||| |||||||||||||||||||| ||
Sbjct: 34523 cgttcgacggaatgccgcagccgagacctacgtcccaggctccggcaagtacatcgcccc 34464

                          
Query: 292   ggactacctcgtg 304
             |||||||||||||
Sbjct: 34463 ggactacctcgtg 34451

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>dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0011E04
          Length = 136767

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 101/119 (84%)
 Strand = Plus / Minus

                                                                         
Query: 307   gaaggtgtcggccagggagctggaggagctcgtcagggggcagcggagggtgccgctcgt 366
             ||||||| |||||| ||| ||||||||||| || |||||| || ||| |||||| ||| |
Sbjct: 87207 gaaggtgacggccaaggaactggaggagctggtgaggggggagaggaaggtgcccctcat 87148

                                                                        
Query: 367   cgtggacttctacgccacctggtgcgggccgtgcgtgctcatggcgcaggacgtcgaga 425
             |||||| |||||||| || |||||||| || ||||| |||||||| |||||| ||||||
Sbjct: 87147 cgtggatttctacgcgacgtggtgcggaccctgcgtcctcatggcccaggacatcgaga 87089



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/73 (89%), Gaps = 3/73 (4%)
 Strand = Plus / Minus

                                                                         
Query: 235   cgttcgacggaa---cgccgcggaggcctacgtcccgggctccggcaagtacatcgcgcc 291
             ||||||||||||   ||| || ||| |||||||||| |||||||||||||||||||| ||
Sbjct: 87411 cgttcgacggaatgccgcagccgagacctacgtcccaggctccggcaagtacatcgcccc 87352

                          
Query: 292   ggactacctcgtg 304
             |||||||||||||
Sbjct: 87351 ggactacctcgtg 87339

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>gb|AE012374.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 282
            of 460 of the complete genome
          Length = 10029

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 368  gtggacttctacgccacctggtgcgggccgtgc 400
            ||||||||||  |||||||||||||||||||||
Sbjct: 3914 gtggacttctgggccacctggtgcgggccgtgc 3946

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>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 365    gtcgtggacttctacgccacctggtgcgg 393
              |||||||||||||||||||| ||||||||
Sbjct: 124369 gtcgtggacttctacgccacgtggtgcgg 124397

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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                
Query: 368     gtggacttctacgccacctggtgcgggccgtgc 400
               ||||||||||  |||||||||||||||||||||
Sbjct: 1800468 gtggacttctgggccacctggtgcgggccgtgc 1800436

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>ref|NM_208626.1| Eremothecium gossypii ACL131Wp (ACL131W), mRNA
          Length = 312

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 365 gtcgtggacttctacgccacctggtgcgg 393
           |||||||||||||||||||| ||||||||
Sbjct: 64  gtcgtggacttctacgccacgtggtgcgg 92

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>emb|X76120.1|PSTRXA Penicillum chrysogenum trxA gene, partial
          Length = 914

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 363 tcgtcgtggacttctacgccacctggtgcgg 393
           ||||||| |||||| ||||||||||||||||
Sbjct: 590 tcgtcgtcgacttccacgccacctggtgcgg 620

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>ref|NM_185032.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 745

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 371 gacttctacgccacctggtgcgggcc 396
           ||||||| ||||||||||||||||||
Sbjct: 252 gacttctccgccacctggtgcgggcc 277

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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 131     gccgcgaccacccgcaccgtct 152
               ||||||||||||||||||||||
Sbjct: 3539146 gccgcgaccacccgcaccgtct 3539125

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 371      gacttctacgccacctggtgcgggcc 396
                ||||||| ||||||||||||||||||
Sbjct: 33089307 gacttctccgccacctggtgcgggcc 33089282

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>emb|CR726234.2|CNS0GNB4 Tetraodon nigroviridis full-length cDNA
          Length = 1528

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 315 cggccagggagctggaggagct 336
           ||||||||||||||||||||||
Sbjct: 938 cggccagggagctggaggagct 959

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>emb|CR715565.2|CNS0GF2X Tetraodon nigroviridis full-length cDNA
          Length = 1401

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 315 cggccagggagctggaggagct 336
           ||||||||||||||||||||||
Sbjct: 938 cggccagggagctggaggagct 959

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>emb|AJ299018.1|OMY299018 Oncorhynchus mykiss mRNA for cyclooxygenase-1 (cox-1 gene)
          Length = 2373

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 316  ggccagggagctggaggagctc 337
            ||||||||||||||||||||||
Sbjct: 1699 ggccagggagctggaggagctc 1720

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 371      gacttctacgccacctggtgcgggcc 396
                ||||||| ||||||||||||||||||
Sbjct: 33179817 gacttctccgccacctggtgcgggcc 33179792

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>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete
             sequence
          Length = 139823

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 371   gacttctacgccacctggtgcgggcc 396
             ||||||| ||||||||||||||||||
Sbjct: 34001 gacttctccgccacctggtgcgggcc 34026

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>gb|AF158374.1|AF158374 Salvelinus fontinalis prostaglandin endoperoxide synthase-1 (PGS-1)
            mRNA, complete cds
          Length = 2099

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 316  ggccagggagctggaggagctc 337
            ||||||||||||||||||||||
Sbjct: 1552 ggccagggagctggaggagctc 1573

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>dbj|AK062383.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B11, full
           insert sequence
          Length = 701

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 371 gacttctacgccacctggtgcgggcc 396
           ||||||| ||||||||||||||||||
Sbjct: 256 gacttctccgccacctggtgcgggcc 281

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>gb|AY232202.1| Drosophila yakuba clone yak-ad_thioredoxin mRNA sequence
          Length = 318

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 369 tggacttctacgccacctggtgcgg 393
           ||||||||| |||||||||||||||
Sbjct: 74  tggacttcttcgccacctggtgcgg 98

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>ref|XM_504314.1| Yarrowia lipolytica CLIB122, YALI0E23540g predicted mRNA
          Length = 600

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 368 gtggacttctacgccacctggtgcgggcc 396
           |||||||||||||||  ||||||||||||
Sbjct: 64  gtggacttctacgccgactggtgcgggcc 92

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>gb|AY184796.1| Chlamydomonas reinhardtii thioredoxin y (TRXy) mRNA, complete cds;
           nuclear gene for chloroplast product
          Length = 1313

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 368 gtggacttctacgccacctggtgcgggcc 396
           |||||||||||||| |||||||| |||||
Sbjct: 297 gtggacttctacgcaacctggtgtgggcc 325

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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 368     gtggacttctacgccacctggtgcgggcc 396
               |||||||||||||||  ||||||||||||
Sbjct: 2773587 gtggacttctacgccgactggtgcgggcc 2773559

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 380     gccacctggtgcgggccgtgc 400
               |||||||||||||||||||||
Sbjct: 1409635 gccacctggtgcgggccgtgc 1409615

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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     tctccggccatggcctccttc 76
              |||||||||||||||||||||
Sbjct: 132976 tctccggccatggcctccttc 132956

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>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    acgccgcggaggcctacgtc 265
              ||||||||||||||||||||
Sbjct: 137664 acgccgcggaggcctacgtc 137683

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>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   acgccgcggaggcctacgtc 265
             ||||||||||||||||||||
Sbjct: 30454 acgccgcggaggcctacgtc 30473

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>gb|AY180169.2| Homo sapiens kinesin light chain 1R (KNS2) mRNA, partial cds
          Length = 972

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 195 gcagcctcagcgccaggagccaccgcgaccgc 226
           |||||| ||| ||||||||||||| |||||||
Sbjct: 830 gcagccccagtgccaggagccaccccgaccgc 861

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>gb|AY206871.1| Chlamys farreri heat shock protein 70 (hsp70) mRNA, complete cds
          Length = 2573

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  ccagggagctggaggagctc 337
            ||||||||||||||||||||
Sbjct: 1884 ccagggagctggaggagctc 1903

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>ref|XM_445713.1| Candida glabrata CBS138, CAGL0E00583g partial mRNA
          Length = 426

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gacttctacgccacctggtg 390
           ||||||||||||||||||||
Sbjct: 184 gacttctacgccacctggtg 203

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>gb|DQ466080.1| Chlamys farreri HSP70 gene, complete cds
          Length = 4368

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  ccagggagctggaggagctc 337
            ||||||||||||||||||||
Sbjct: 4248 ccagggagctggaggagctc 4267

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>gb|AC115891.7| Mus musculus chromosome 10, clone RP24-421G4, complete sequence
          Length = 166946

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ggccagggagctggaggagc 335
             ||||||||||||||||||||
Sbjct: 74897 ggccagggagctggaggagc 74916



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ggccagggagctggaggagc 335
             ||||||||||||||||||||
Sbjct: 74759 ggccagggagctggaggagc 74778



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ggccagggagctggaggagc 335
             ||||||||||||||||||||
Sbjct: 74736 ggccagggagctggaggagc 74755



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ggccagggagctggaggagc 335
             ||||||||||||||||||||
Sbjct: 74713 ggccagggagctggaggagc 74732



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ggccagggagctggaggagc 335
             ||||||||||||||||||||
Sbjct: 74644 ggccagggagctggaggagc 74663



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ggccagggagctggaggagc 335
             ||||||||||||||||||||
Sbjct: 74575 ggccagggagctggaggagc 74594

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>ref|XM_783330.1| PREDICTED: Strongylocentrotus purpuratus similar to GCN1 general
            control of amino-acid synthesis 1-like 1 (LOC583423),
            partial mRNA
          Length = 6013

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  gtgaggaaggtgtcggccag 321
            ||||||||||||||||||||
Sbjct: 3616 gtgaggaaggtgtcggccag 3635

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>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   gacttctacgccacctggtg 390
             ||||||||||||||||||||
Sbjct: 52987 gacttctacgccacctggtg 52968

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>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   cggcaagtacatcgcgccgg 293
             ||||||||||||||||||||
Sbjct: 38858 cggcaagtacatcgcgccgg 38839

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>emb|AJ010449.1|AMY010449 Alopecurus myosuroides mRNA for glutathione transferase 1b
          Length = 837

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 54  cctctccggccatggcctcc 73
           ||||||||||||||||||||
Sbjct: 570 cctctccggccatggcctcc 551

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>emb|AJ010448.1|AMY010448 Alopecurus myosuroides mRNA for glutathione transferase 1a
          Length = 980

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 54  cctctccggccatggcctcc 73
           ||||||||||||||||||||
Sbjct: 567 cctctccggccatggcctcc 548

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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 208     caggagccaccgcgaccgca 227
               ||||||||||||||||||||
Sbjct: 1616149 caggagccaccgcgaccgca 1616130

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>gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complete sequence
          Length = 193980

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     ccctccccccgcaaggcttccacc 122
              |||||||||||| |||||||||||
Sbjct: 181799 ccctccccccgccaggcttccacc 181822

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>gb|AF305205.1|AF305205 Triticum aestivum cytosolic acetyl-CoA carboxylase Acc-2,2 gene,
            partial cds
          Length = 3393

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 234  ccgttcgacggaacgccgcggagg 257
            ||||||||||||| ||||||||||
Sbjct: 2281 ccgttcgacggaatgccgcggagg 2258

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>gb|AF037222.1| Human DNA from chromosome 14-specific cosmid containing XRCC3 DNA
             repair gene, genomic sequence, complete sequence
          Length = 36628

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 195   gcagcctcagcgccaggagccaccgcgaccgc 226
             |||||| ||| ||||||||||||| |||||||
Sbjct: 23658 gcagccccagtgccaggagccaccccgaccgc 23627

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>tpg|BK001171.2| TPA: TPA_exp: Homo sapiens kinesin light chain 1R (KNS2) mRNA,
            complete cds; alternatively spliced
          Length = 2555

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 195  gcagcctcagcgccaggagccaccgcgaccgc 226
            |||||| ||| ||||||||||||| |||||||
Sbjct: 2413 gcagccccagtgccaggagccaccccgaccgc 2444

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 246      acgccgcggaggcctacgtc 265
                ||||||||||||||||||||
Sbjct: 22877947 acgccgcggaggcctacgtc 22877966

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>dbj|AK024714.1| Homo sapiens cDNA: FLJ21061 fis, clone CAS01010
          Length = 2111

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 195  gcagcctcagcgccaggagccaccgcgaccgc 226
            |||||| ||| ||||||||||||| |||||||
Sbjct: 1860 gcagccccagtgccaggagccaccccgaccgc 1891

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>gb|AF213884.1|AF213884S1 Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in
             B-cells 1 (NFKB1) gene, complete cds
          Length = 190000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    ccctccccccgcaaggcttccacc 122
             |||||||||||| |||||||||||
Sbjct: 43084 ccctccccccgccaggcttccacc 43061

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>emb|AL049840.8|CNS0000K Human chromosome 14 DNA sequence BAC R-73M18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165617

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 195    gcagcctcagcgccaggagccaccgcgaccgc 226
              |||||| ||| ||||||||||||| |||||||
Sbjct: 152994 gcagccccagtgccaggagccaccccgaccgc 152963

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>gb|AF039403.1|AF039403 Gallus gallus paired box protein (Pax-1) gene, 5' flanking region and
            partial cds
          Length = 1188

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 181  gggcgccgccccccgcagcc 200
            ||||||||||||||||||||
Sbjct: 1036 gggcgccgccccccgcagcc 1055

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 442     cgaggacaccgcgctgttcg 461
               ||||||||||||||||||||
Sbjct: 1102769 cgaggacaccgcgctgttcg 1102788

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 246      acgccgcggaggcctacgtc 265
                ||||||||||||||||||||
Sbjct: 23187857 acgccgcggaggcctacgtc 23187876


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,645,029
Number of Sequences: 3902068
Number of extensions: 2645029
Number of successful extensions: 53542
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52859
Number of HSP's gapped (non-prelim): 683
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result