ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast75d08 |
|---|---|
| Clone Library Name | barley_pub |
>ADA2C_CAVPO (Q60476) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)| (Alpha-2C adrenoreceptor) Length = 455 Score = 33.9 bits (76), Expect = 0.11 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 13/97 (13%) Frame = +2 Query: 2 SPSSALALLVMASKSSRGPGVATGGSEAEEALLLP---EHGAGAPPGNASVLGAVFNVST 172 SP+ A ALL ++ G G GG A A+ P ++ AGA G A+V+G F + Sbjct: 3 SPALAAALLAAEGPNASGAGEGGGGVNASGAVWGPPPSQYSAGAVAGLAAVVG--FLIVF 60 Query: 173 SVVGAGIMSI----------PAAMRVLGVAPAEALIA 253 +VVG ++ I P + ++ +A A+ L+A Sbjct: 61 TVVGNVLVVIAVLTSRALRAPQNLFLVSLASADILVA 97
>YAN9_SCHPO (Q10074) Hypothetical protein C3H1.09c in chromosome I| Length = 656 Score = 32.3 bits (72), Expect = 0.33 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Frame = +2 Query: 83 AEEALLLPEHGAGA--PPGNASVLGAVFNVSTSVVGAGIMSIPAAMRVLGV--APAEALI 250 +E+ L+ HG PGNAS AV + S VG G++ +P A ++ G+ + A LI Sbjct: 255 SEQEPLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLI 314 Query: 251 AGV 259 GV Sbjct: 315 VGV 317
>GHSR_PIG (Q95254) Growth hormone secretagogue receptor type 1 (GHS-R)| (GH-releasing peptide receptor) (GHRP) (Ghrelin receptor) Length = 366 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = +2 Query: 65 ATGGSEAEEALLLPEHGAGAPPGNASVLGAVFNVSTSVVGAGIMSIPAAMRVLGVA 232 AT E L LP+ G APP N S++ + + + + AG+ + A+ V+G+A Sbjct: 4 ATPSEEPGPNLTLPDLGWDAPPENDSLVEELLPLFPTPLLAGVTATCVALFVVGIA 59
>GCDC_ACIFE (Q9ZAA7) Glutaconyl-CoA decarboxylase gamma subunit (EC 4.1.1.70)| (Biotin carrier) Length = 145 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 134 NASVLGAVFNVSTSVVGAGIMSIPAAMRVLGVAPAEALIA 253 N +V G V+ V VG + + PAA APA A +A Sbjct: 5 NVNVNGTVYTVEVEEVGGAVTAAPAAPAAPAAAPAAAPVA 44
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = +2 Query: 44 SSRGPGVATGGSEAE-EALLLPEHGAGAPPGN 136 +++GPGV G +E + EAL E GA PPG+ Sbjct: 1212 ATQGPGVMEGAAETDQEALCAGETGAQKPPGD 1243
>CING_MOUSE (P59242) Cingulin| Length = 1191 Score = 29.6 bits (65), Expect = 2.1 Identities = 11/35 (31%), Positives = 24/35 (68%) Frame = -2 Query: 252 AMSASAGATPSTRMAAGMDMIPAPTTLVDTLNTAP 148 +++ A +PS R + +++ P PT+ ++T++TAP Sbjct: 134 SLTGLAFMSPSNRSTSLLELAPKPTSSINTIDTAP 168
>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)| Length = 3866 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 255 PAMSASAGATPSTRMAAGMDMIPAPT 178 PA SAS G++PS+ +G +P PT Sbjct: 3405 PASSASPGSSPSSGQQSGSSSVPGPT 3430
>ARMX2_HUMAN (Q7L311) Armadillo repeat-containing X-linked protein 2 (Protein| ALEX2) (ARM protein lost in epithelial cancers on chromosome X 2) Length = 632 Score = 29.6 bits (65), Expect = 2.1 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 11/77 (14%) Frame = +2 Query: 38 SKSSRGPGVATGGSEAEEALLLPEHGAGAPPGNASVLGAVFNVSTSVV-----------G 184 +K + PGVA+ AE + GA AP G A G + T+VV G Sbjct: 203 TKVAEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPG 262 Query: 185 AGIMSIPAAMRVLGVAP 235 A +IP A G P Sbjct: 263 AHTGAIPKATSATGAVP 279
>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor| Length = 1115 Score = 28.9 bits (63), Expect = 3.6 Identities = 22/67 (32%), Positives = 33/67 (49%) Frame = +2 Query: 11 SALALLVMASKSSRGPGVATGGSEAEEALLLPEHGAGAPPGNASVLGAVFNVSTSVVGAG 190 SAL LL +A ++ + G+ A+ LLLP GA A A+ GA + A Sbjct: 893 SALQLLTLAVSLAQLHQLHAAGAVADTPLLLP--GAAAAAAAAAPAGASSAAAAGDSPAA 950 Query: 191 IMSIPAA 211 + ++PAA Sbjct: 951 LSAVPAA 957
>SOX30_MOUSE (Q8CGW4) Transcription factor SOX-30| Length = 782 Score = 28.9 bits (63), Expect = 3.6 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 10/53 (18%) Frame = +2 Query: 2 SPSSALALLVMASKSSRGPGVATGGSEA----------EEALLLPEHGAGAPP 130 SPS+ + A SS G A G A E+ LLLP G G PP Sbjct: 52 SPSAQATAAMAAVASSCGEAAAAGAQAAGTRRLLQVKPEQVLLLPPGGPGVPP 104
>SOX21_MOUSE (Q811W0) Transcription factor SOX-21| Length = 276 Score = 28.9 bits (63), Expect = 3.6 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 183 APGSCPSRRPCGCSAWPRPRRSSP 254 +PG+ PC CSAWP P P Sbjct: 228 SPGNPGYMIPCNCSAWPSPGLQPP 251
>SOX21_HUMAN (Q9Y651) Transcription factor SOX-21 (SOX-A)| Length = 276 Score = 28.9 bits (63), Expect = 3.6 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 183 APGSCPSRRPCGCSAWPRPRRSSP 254 +PG+ PC CSAWP P P Sbjct: 228 SPGNPGYMIPCNCSAWPSPGLQPP 251
>ZN297_MOUSE (Q9Z0G7) Zinc finger protein 297 (BING1 protein)| Length = 638 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = +2 Query: 119 GAPPGNASVLGAVFNVSTSVVGAGIMS 199 G PPGN + GAV TS VG GI S Sbjct: 439 GQPPGNTAEHGAVTLGGTSAVGLGIPS 465
>DNAA_STRCO (P27902) Chromosomal replication initiator protein dnaA| Length = 656 Score = 28.5 bits (62), Expect = 4.8 Identities = 22/64 (34%), Positives = 26/64 (40%) Frame = +2 Query: 53 GPGVATGGSEAEEALLLPEHGAGAPPGNASVLGAVFNVSTSVVGAGIMSIPAAMRVLGVA 232 GPG ATG A P G G P L + T V+GA AA + A Sbjct: 289 GPGPATGAPGPLAAQPAPATGPGEPTAR---LNPKYLFDTFVIGASNRFAHAAAVAVAEA 345 Query: 233 PAEA 244 PA+A Sbjct: 346 PAKA 349
>SOX21_CHICK (Q9W7R5) Transcription factor SOX-21| Length = 280 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 183 APGSCPSRRPCGCSAWPRPRRSSP 254 +PG+ PC CSAWP P P Sbjct: 232 SPGNPGYMIPCNCSAWPGPGLQPP 255
>ELN_RAT (Q99372) Elastin precursor (Tropoelastin)| Length = 870 Score = 28.1 bits (61), Expect = 6.2 Identities = 19/76 (25%), Positives = 32/76 (42%) Frame = +2 Query: 29 VMASKSSRGPGVATGGSEAEEALLLPEHGAGAPPGNASVLGAVFNVSTSVVGAGIMSIPA 208 V A+K+++ G GG +LP G G PG A + + ++ + A + A Sbjct: 305 VAAAKAAKYAGAGGGG-------VLPGVGGGGIPGGAGAIPGIGGITGAGTPAAAAAAKA 357 Query: 209 AMRVLGVAPAEALIAG 256 A + A L+ G Sbjct: 358 AAKAAKYGAAGGLVPG 373 Score = 27.7 bits (60), Expect = 8.1 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%) Frame = +2 Query: 53 GPGVATGGSEAEEALLLPEHGAGAPPGNASV------LGAVFNVSTSVVGAGIMSIPAAM 214 GPG + +L+P GAGA + LG + V G G+ +P A+ Sbjct: 94 GPGAGLSYASRPGGVLVPGGGAGAAAAYKAAAKAGAGLGGIGGVPG---GVGVGGVPGAV 150 Query: 215 RVLGVAPAEALIAGV 259 V GV A I G+ Sbjct: 151 GVGGVPGAVGGIGGI 165
>NIFN_HERSE (O87627) Nitrogenase iron-molybdenum cofactor biosynthesis protein| nifN Length = 443 Score = 28.1 bits (61), Expect = 6.2 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 13/57 (22%) Frame = +2 Query: 74 GSEAEEALLLPEHGAGAPP-------------GNASVLGAVFNVSTSVVGAGIMSIP 205 G +A E L +P H AG PP G G +F + V G G + P Sbjct: 386 GGQAAERLHIPFHRAGLPPCSTGLGAGHCLSVGYRGTRGLIFEIGQPVAGRGPCTYP 442
>HRBL_MOUSE (Q80WC7) HIV-1 Rev-binding protein-like protein (Rev/Rex| activation domain binding protein-related) (RAB-R) Length = 479 Score = 28.1 bits (61), Expect = 6.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 26 LVMASKSSRGPGVATGGSEAE 88 +VMA+K GPG GGS+AE Sbjct: 1 MVMAAKKGPGPGGGVGGSKAE 21
>PPE30_MYCTU (P0A692) Hypothetical PPE-family protein PPE30| Length = 463 Score = 28.1 bits (61), Expect = 6.2 Identities = 18/77 (23%), Positives = 32/77 (41%) Frame = +2 Query: 29 VMASKSSRGPGVATGGSEAEEALLLPEHGAGAPPGNASVLGAVFNVSTSVVGAGIMSIPA 208 + + S P ++ G S+A G PP A+ A+ V+ G+ ++PA Sbjct: 296 ISSGLGSTAPAISAGASQAGSV-----GGMSVPPSWAAATPAIRTVAAVFSSTGLQAVPA 350 Query: 209 AMRVLGVAPAEALIAGV 259 A G ++ +A V Sbjct: 351 AAISEGSLLSQMALASV 367
>PPE30_MYCBO (P0A693) Hypothetical PPE-family protein PPE30| Length = 463 Score = 28.1 bits (61), Expect = 6.2 Identities = 18/77 (23%), Positives = 32/77 (41%) Frame = +2 Query: 29 VMASKSSRGPGVATGGSEAEEALLLPEHGAGAPPGNASVLGAVFNVSTSVVGAGIMSIPA 208 + + S P ++ G S+A G PP A+ A+ V+ G+ ++PA Sbjct: 296 ISSGLGSTAPAISAGASQAGSV-----GGMSVPPSWAAATPAIRTVAAVFSSTGLQAVPA 350 Query: 209 AMRVLGVAPAEALIAGV 259 A G ++ +A V Sbjct: 351 AAISEGSLLSQMALASV 367
>HXA4_MOUSE (P06798) Homeobox protein Hox-A4 (Hox-1.4) (MH-3)| Length = 285 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +2 Query: 56 PGVATGGSEAEEALLLPEHGAGAPPGNASVL 148 P VATGGS LLL + G P G V+ Sbjct: 129 PAVATGGSAPACPLLLADQGPAGPKGKEPVV 159
>GCSP1_PSEF5 (Q4K7Q8) Glycine dehydrogenase [decarboxylating] 1 (EC 1.4.4.2)| (Glycine decarboxylase 1) (Glycine cleavage system P-protein 1) Length = 951 Score = 28.1 bits (61), Expect = 6.2 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 9/56 (16%) Frame = +2 Query: 53 GPGVATGGSEAEEALLLPEHGA---------GAPPGNASVLGAVFNVSTSVVGAGI 193 GPGV G ++ A LP H A AP G+AS+L + + + GAG+ Sbjct: 713 GPGVGPIGVKSHLAPFLPGHAALENKKGAVCAAPFGSASILPITWMYISMMGGAGL 768
>YDYD_SCHPO (O13692) Hypothetical protein C11E3.13c precursor| Length = 510 Score = 28.1 bits (61), Expect = 6.2 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Frame = +2 Query: 2 SPSSALALLVMASKSSRGPGVATGGSEAEEALLLPE----HGAGAPPGNASVLGAV--FN 163 S SS+ + +S S G +++G S + H +G+ G++S + FN Sbjct: 432 SGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAHSSGSSSGSSSATSSASTFN 491 Query: 164 VSTSVVGAGIMSI 202 +S V AGI++I Sbjct: 492 LSRFYVFAGILAI 504
>SAT4_ARATH (Q8W2B8) Serine acetyltransferase 4 (EC 2.3.1.30) (AtSAT-4)| (AtSERAT3;2) Length = 355 Score = 27.7 bits (60), Expect = 8.1 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +2 Query: 59 GVATGGSEAEEALLLPEHGAGAPPGNASVLGAVFNVSTSV-VGAGIMSIPAAMRVLGVAP 235 GV GG+ E P G GA +LGA + ++ +GAG M + A VL P Sbjct: 243 GVTLGGTGKETGDRHPNIGDGA------LLGACVTILGNIKIGAGAM-VAAGSLVLKDVP 295 Query: 236 AEALIAG 256 + +++AG Sbjct: 296 SHSMVAG 302
>S38A3_RAT (Q9JHZ9) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 27.7 bits (60), Expect = 8.1 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 131 GNASVLGAVFNVSTSVVGAGIMSIPAAMRVLGV 229 G S +VFN+S +++G+GI+ + AM G+ Sbjct: 63 GKTSFGMSVFNLSNAIMGSGILGLAYAMANTGI 95
>S38A3_HUMAN (Q99624) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 27.7 bits (60), Expect = 8.1 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 131 GNASVLGAVFNVSTSVVGAGIMSIPAAMRVLGV 229 G S +VFN+S +++G+GI+ + AM G+ Sbjct: 64 GKTSFGMSVFNLSNAIMGSGILGLAYAMANTGI 96
>MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 27.7 bits (60), Expect = 8.1 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -2 Query: 258 TPAMSASAGATPSTRMAAGMDMIPAPTTLVDTLNTAPRT 142 +PA + G TP+T PAPTTL T+ P T Sbjct: 119 SPATPSEDGHTPTTESPPSR---PAPTTLASTVGQPPTT 154
>S38A3_MOUSE (Q9DCP2) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) (mNAT) Length = 505 Score = 27.7 bits (60), Expect = 8.1 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 131 GNASVLGAVFNVSTSVVGAGIMSIPAAMRVLGV 229 G S +VFN+S +++G+GI+ + AM G+ Sbjct: 63 GKTSFGMSVFNLSNAIMGSGILGLAYAMANTGI 95
>EI2BE_RABIT (P47823) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 721 Score = 27.7 bits (60), Expect = 8.1 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +2 Query: 50 RGPGVATG-GSEAEEALLLPEHGAGAPPGNASVLGAVFNVSTSVVGAG 190 RGP V+ G GS EE +LL G+ +V+G+ +++ SV+G G Sbjct: 344 RGPEVSLGHGSILEENVLL---------GSGTVIGSNCSITNSVIGPG 382 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,415,910 Number of Sequences: 219361 Number of extensions: 346466 Number of successful extensions: 1940 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1869 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1939 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
