ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190405.1| Oryza sativa (japonica cultivar-group), predic... 167 2e-38
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 167 2e-38
3dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic D... 167 2e-38
4ref|NM_190406.1| Oryza sativa (japonica cultivar-group), predic... 105 7e-20
5dbj|AK102220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 7e-20
6gb|AE012336.1| Xanthomonas campestris pv. campestris str. ATCC 3... 46 0.054
7gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 46 0.054
8dbj|AP006865.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.054
9ref|NM_185810.1| Oryza sativa (japonica cultivar-group), predic... 44 0.21
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.21
11gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.21
12dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.21
13gb|AE005006.1| Halobacterium sp. NRC-1 section 37 of 170 of the ... 44 0.21
14dbj|AK120497.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.21
15dbj|AK099920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.21
16dbj|AK066102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.21
17gb|AE012366.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 0.85
18dbj|AB079245.1| Streptomyces exfoliatus lf2 gene for 2,6-beta-D-... 42 0.85
19ref|XM_523807.1| PREDICTED: Pan troglodytes similar to seven tra... 40 3.4
20ref|XM_518111.1| PREDICTED: Pan troglodytes similar to Homeobox ... 40 3.4
21gb|BT009814.1| Homo sapiens msh homeo box homolog 2 (Drosophila)... 40 3.4
22gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 3.4
23emb|AL132976.2|ATF11C1 Arabidopsis thaliana DNA chromosome 3, BA... 40 3.4
24ref|NM_002449.4| Homo sapiens msh homeobox homolog 2 (Drosophila... 40 3.4
25gb|AC117531.2| Homo sapiens chromosome 5 clone RP11-603O17, comp... 40 3.4
26emb|CR592938.1| full-length cDNA clone CS0DC025YD16 of Neuroblas... 40 3.4
27gb|S75308.1| Msx-2 homolog [human, dental pulp-derived cells, Ge... 40 3.4
28gb|S75361.1| Msx-2 homolog [human, dental pulp-derived cells, mR... 40 3.4
29gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 3.4
30dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.4
31gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin ... 40 3.4
32gb|AY888869.1| Synthetic construct Homo sapiens clone FLH109713.... 40 3.4
33gb|AY888868.1| Synthetic construct Homo sapiens clone FLH109712.... 40 3.4
34gb|AY888867.1| Synthetic construct Homo sapiens clone FLH109709.... 40 3.4
35gb|AY888866.1| Synthetic construct Homo sapiens clone FLH109708.... 40 3.4
36gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 3.4
37dbj|D26145.1|HUMMSX2 Homo sapiens MSX-2 mRNA, derived full lengt... 40 3.4
38dbj|D31771.1|HUMHDPMSX2 Homo sapiens mRNA for MSX-2, complete cds 40 3.4
39gb|BC015509.1| Homo sapiens msh homeobox homolog 2 (Drosophila),... 40 3.4
40gb|L22498.1|HUMMSX01 Human Msx2 gene, exon 1 sequence 40 3.4
41dbj|D89377.1| Homo sapiens mRNA for MSX-2, complete cds 40 3.4 
>ref|NM_190405.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1377

 Score =  167 bits (84), Expect = 2e-38
 Identities = 93/96 (96%)
 Strand = Plus / Plus

                                                                       
Query: 136 cgcgtcggtcctcggcgcggtgttcaacgtgtcgacgagcgtggtgggcgccgggatcat 195
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 117 cgcgtcggtgctcggcgcggtgttcaacgtgtcgacgagcgtcgtgggcgccgggatcat 176

                                               
Query: 196 gtccatcccggcggccatgcgggtgctcggcgtggc 231
           ||| ||||||||||||||||||||||||||||||||
Sbjct: 177 gtcgatcccggcggccatgcgggtgctcggcgtggc 212
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  167 bits (84), Expect = 2e-38
 Identities = 93/96 (96%)
 Strand = Plus / Minus

                                                                            
Query: 136      cgcgtcggtcctcggcgcggtgttcaacgtgtcgacgagcgtggtgggcgccgggatcat 195
                ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 35316303 cgcgtcggtgctcggcgcggtgttcaacgtgtcgacgagcgtcgtgggcgccgggatcat 35316244

                                                    
Query: 196      gtccatcccggcggccatgcgggtgctcggcgtggc 231
                ||| ||||||||||||||||||||||||||||||||
Sbjct: 35316243 gtcgatcccggcggccatgcgggtgctcggcgtggc 35316208



 Score =  105 bits (53), Expect = 7e-20
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                            
Query: 137      gcgtcggtcctcggcgcggtgttcaacgtgtcgacgagcgtggtgggcgccgggatcatg 196
                |||||||||  |||||||||||||||||||||||||||| |  | |||||||| ||||||
Sbjct: 35320301 gcgtcggtctccggcgcggtgttcaacgtgtcgacgagcatcatcggcgccggaatcatg 35320242

                                             
Query: 197      tccatcccggcggccatgcgggtgctcgg 225
                || ||||||||||| ||||||||||||||
Sbjct: 35320241 tcaatcccggcggcaatgcgggtgctcgg 35320213
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>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0439E11
          Length = 146083

 Score =  167 bits (84), Expect = 2e-38
 Identities = 93/96 (96%)
 Strand = Plus / Minus

                                                                         
Query: 136   cgcgtcggtcctcggcgcggtgttcaacgtgtcgacgagcgtggtgggcgccgggatcat 195
             ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80164 cgcgtcggtgctcggcgcggtgttcaacgtgtcgacgagcgtcgtgggcgccgggatcat 80105

                                                 
Query: 196   gtccatcccggcggccatgcgggtgctcggcgtggc 231
             ||| ||||||||||||||||||||||||||||||||
Sbjct: 80104 gtcgatcccggcggccatgcgggtgctcggcgtggc 80069



 Score =  105 bits (53), Expect = 7e-20
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                         
Query: 137   gcgtcggtcctcggcgcggtgttcaacgtgtcgacgagcgtggtgggcgccgggatcatg 196
             |||||||||  |||||||||||||||||||||||||||| |  | |||||||| ||||||
Sbjct: 84162 gcgtcggtctccggcgcggtgttcaacgtgtcgacgagcatcatcggcgccggaatcatg 84103

                                          
Query: 197   tccatcccggcggccatgcgggtgctcgg 225
             || ||||||||||| ||||||||||||||
Sbjct: 84102 tcaatcccggcggcaatgcgggtgctcgg 84074
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>ref|NM_190406.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 573

 Score =  105 bits (53), Expect = 7e-20
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                       
Query: 137 gcgtcggtcctcggcgcggtgttcaacgtgtcgacgagcgtggtgggcgccgggatcatg 196
           |||||||||  |||||||||||||||||||||||||||| |  | |||||||| ||||||
Sbjct: 97  gcgtcggtctccggcgcggtgttcaacgtgtcgacgagcatcatcggcgccggaatcatg 156

                                        
Query: 197 tccatcccggcggccatgcgggtgctcgg 225
           || ||||||||||| ||||||||||||||
Sbjct: 157 tcaatcccggcggcaatgcgggtgctcgg 185
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>dbj|AK102220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L14, full
           insert sequence
          Length = 1580

 Score =  105 bits (53), Expect = 7e-20
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                       
Query: 137 gcgtcggtcctcggcgcggtgttcaacgtgtcgacgagcgtggtgggcgccgggatcatg 196
           |||||||||  |||||||||||||||||||||||||||| |  | |||||||| ||||||
Sbjct: 124 gcgtcggtctccggcgcggtgttcaacgtgtcgacgagcatcatcggcgccggaatcatg 183

                                        
Query: 197 tccatcccggcggccatgcgggtgctcgg 225
           || ||||||||||| ||||||||||||||
Sbjct: 184 tcaatcccggcggcaatgcgggtgctcgg 212
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>gb|AE012336.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 244
            of 460 of the complete genome
          Length = 10286

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 49   gcgcggccccggcgtggccaccggcgg 75
            ||||||| |||||||||||||||||||
Sbjct: 5129 gcgcggcgccggcgtggccaccggcgg 5155
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 49      gcgcggccccggcgtggccaccggcgg 75
               ||||||| |||||||||||||||||||
Sbjct: 2220915 gcgcggcgccggcgtggccaccggcgg 2220889



 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 225     gcgtggccccggccgaggcgc 245
               |||||||||||||||||||||
Sbjct: 1892126 gcgtggccccggccgaggcgc 1892146
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>dbj|AP006865.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT37H21, TM1032,
             complete sequence
          Length = 95067

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                
Query: 148   cggcgcggtgttcaacgtgtcgacgagcgtggtgggcgccgggatcatgtc 198
             |||||||||||||||| | || || | | ||||||| ||||||||||||||
Sbjct: 79982 cggcgcggtgttcaacatatcaaccaccatggtgggtgccgggatcatgtc 79932
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>ref|NM_185810.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1347

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 148 cggcgcggtgttcaacgtgtcgacga 173
           |||||||||||||||| |||||||||
Sbjct: 96  cggcgcggtgttcaacctgtcgacga 121
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 148     cggcgcggtgttcaacgtgtcgacga 173
               |||||||||||||||| |||||||||
Sbjct: 9407377 cggcgcggtgttcaacctgtcgacga 9407402
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 46      ctcgcgcggccccggcgtggccaccg 71
               |||||||||||||||||||| |||||
Sbjct: 3230824 ctcgcgcggccccggcgtgggcaccg 3230799
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>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0038C05
          Length = 152941

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 148    cggcgcggtgttcaacgtgtcgacga 173
              |||||||||||||||| |||||||||
Sbjct: 135787 cggcgcggtgttcaacctgtcgacga 135812
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>gb|AE005006.1| Halobacterium sp. NRC-1 section 37 of 170 of the complete genome
          Length = 13283

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 201  tcccggcggccatgcgggtgctcggcgtgg 230
            |||||||||| |||||| ||||||||||||
Sbjct: 7108 tcccggcggcgatgcggctgctcggcgtgg 7137
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>dbj|AK120497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121D24, full
           insert sequence
          Length = 1985

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 148 cggcgcggtgttcaacgtgtcgacga 173
           |||||||||||||||| |||||||||
Sbjct: 425 cggcgcggtgttcaacctgtcgacga 450
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>dbj|AK099920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116L21, full
           insert sequence
          Length = 1869

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 148 cggcgcggtgttcaacgtgtcgacga 173
           |||||||||||||||| |||||||||
Sbjct: 357 cggcgcggtgttcaacctgtcgacga 382
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>dbj|AK066102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051P03, full
           insert sequence
          Length = 1778

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 148 cggcgcggtgttcaacgtgtcgacga 173
           |||||||||||||||| |||||||||
Sbjct: 293 cggcgcggtgttcaacctgtcgacga 318
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>gb|AE012366.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 274
            of 460 of the complete genome
          Length = 10585

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 225  gcgtggccccggccgaggcgc 245
            |||||||||||||||||||||
Sbjct: 1775 gcgtggccccggccgaggcgc 1755
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>dbj|AB079245.1| Streptomyces exfoliatus lf2 gene for 2,6-beta-D-fructan
            6-levanbiohydrolase, complete cds
          Length = 4004

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 144  tcctcggcgcggtgttcaacg 164
            |||||||||||||||||||||
Sbjct: 3885 tcctcggcgcggtgttcaacg 3905
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>ref|XM_523807.1| PREDICTED: Pan troglodytes similar to seven transmembrane helix
            receptor (LOC468418), mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  gtggccccggccgaggcgct 246
            ||||||||||||||||||||
Sbjct: 1247 gtggccccggccgaggcgct 1228
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>ref|XM_518111.1| PREDICTED: Pan troglodytes similar to Homeobox protein MSX-2
           (Hox-8) (LOC462281), mRNA
          Length = 611

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 273 gtggccccggccgaggcgct 254
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>gb|BT009814.1| Homo sapiens msh homeo box homolog 2 (Drosophila) mRNA, complete
           cds
          Length = 804

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 224 gtggccccggccgaggcgct 205
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 150     gcgcggtgttcaacgtgtcg 169
               ||||||||||||||||||||
Sbjct: 1184961 gcgcggtgttcaacgtgtcg 1184980
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>emb|AL132976.2|ATF11C1 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1
          Length = 111122

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    gcgctcctgctcccggagca 111
             ||||||||||||||||||||
Sbjct: 42214 gcgctcctgctcccggagca 42195
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>ref|NM_002449.4| Homo sapiens msh homeobox homolog 2 (Drosophila) (MSX2), mRNA
          Length = 2224

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 312 gtggccccggccgaggcgct 293
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>gb|AC117531.2| Homo sapiens chromosome 5 clone RP11-603O17, complete sequence
          Length = 160415

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   gtggccccggccgaggcgct 246
             ||||||||||||||||||||
Sbjct: 99567 gtggccccggccgaggcgct 99548
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>emb|CR592938.1| full-length cDNA clone CS0DC025YD16 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1138

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 280 gtggccccggccgaggcgct 261
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>gb|S75308.1| Msx-2 homolog [human, dental pulp-derived cells, Genomic, 1183 nt]
          Length = 1183

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 285 gtggccccggccgaggcgct 266
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>gb|S75361.1| Msx-2 homolog [human, dental pulp-derived cells, mRNA, 2065 nt]
          Length = 2065

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 285 gtggccccggccgaggcgct 266
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 20      gctttgctcgtcatggcgtc 39
               ||||||||||||||||||||
Sbjct: 1743093 gctttgctcgtcatggcgtc 1743112
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 220     gctcggcgtggccccggccgaggc 243
               ||||||| ||||||||||||||||
Sbjct: 2081986 gctcggcctggccccggccgaggc 2082009
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>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster,
             complete sequence
          Length = 123580

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   tggccccggccgaggcgctc 247
             ||||||||||||||||||||
Sbjct: 83940 tggccccggccgaggcgctc 83959
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>gb|AY888869.1| Synthetic construct Homo sapiens clone FLH109713.01X msh
           homeobox-like 2 (MSX2) mRNA, complete cds
          Length = 804

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 224 gtggccccggccgaggcgct 205
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>gb|AY888868.1| Synthetic construct Homo sapiens clone FLH109712.01X msh
           homeobox-like 2 (MSX2) mRNA, complete cds
          Length = 804

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 224 gtggccccggccgaggcgct 205
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>gb|AY888867.1| Synthetic construct Homo sapiens clone FLH109709.01X msh
           homeobox-like 2 (MSX2) mRNA, complete cds
          Length = 804

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 224 gtggccccggccgaggcgct 205
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>gb|AY888866.1| Synthetic construct Homo sapiens clone FLH109708.01X msh
           homeobox-like 2 (MSX2) mRNA, complete cds
          Length = 804

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 224 gtggccccggccgaggcgct 205
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    ggtcctcggcgcggtgttca 161
              ||||||||||||||||||||
Sbjct: 157213 ggtcctcggcgcggtgttca 157194
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>dbj|D26145.1|HUMMSX2 Homo sapiens MSX-2 mRNA, derived full length clone
          Length = 2152

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 247 gtggccccggccgaggcgct 228
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>dbj|D31771.1|HUMHDPMSX2 Homo sapiens mRNA for MSX-2, complete cds
          Length = 1164

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 285 gtggccccggccgaggcgct 266
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>gb|BC015509.1| Homo sapiens msh homeobox homolog 2 (Drosophila), mRNA (cDNA clone
           MGC:9173 IMAGE:3903028), complete cds
          Length = 1143

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 247 gtggccccggccgaggcgct 228
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>gb|L22498.1|HUMMSX01 Human Msx2 gene, exon 1 sequence
          Length = 982

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 446 gtggccccggccgaggcgct 427
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>dbj|D89377.1| Homo sapiens mRNA for MSX-2, complete cds
          Length = 2199

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gtggccccggccgaggcgct 246
           ||||||||||||||||||||
Sbjct: 285 gtggccccggccgaggcgct 266


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,707,371
Number of Sequences: 3902068
Number of extensions: 1707371
Number of successful extensions: 39301
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38461
Number of HSP's gapped (non-prelim): 840
length of query: 259
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 237
effective length of database: 17,147,199,772
effective search space: 4063886345964
effective search space used: 4063886345964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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