>HPS4_HUMAN (Q9NQG7) Hermansky-Pudlak syndrome 4 protein (Light-ear protein|
           homolog)
          Length = 708

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 202 PGHLGE----RHAPMSRRARRPLQNPGREPGRSGRR 297
           PGH  +    R  P+ RR RRPL  P  +PG+ G +
Sbjct: 447 PGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNK 482

>PLMN_BOVIN (P06868) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin|
           heavy chain A; Activation peptide; Plasmin heavy chain
           A, short form; Plasmin light chain B]
          Length = 812

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = +2

Query: 23  PEAGLRCPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTTHLPNQLAPKMDGAE 187
           P AGL     R P   K  W   T  R  W+  + K+C  T      AP+  G E
Sbjct: 424 PNAGLTMNYCRNPDADKSPWCYTTDPRVRWEFCNLKKCSETPEQVPAAPQAPGVE 478

>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.2)
           (Low-voltage-activated calcium channel alpha1 3.2
           subunit)
          Length = 2353

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -2

Query: 299 HRRPLRPGSRPGFCSGRRALLLIGAWRSPRWPGVG 195
           H  P RPG  PG C  R  L+  GA  SP  PG G
Sbjct: 533 HGSPRRPGPEPGACDTR--LVRAGAPPSPPSPGRG 565

>PLIN_HUMAN (O60240) Perilipin (PERI) (Lipid droplet-associated protein)|
          Length = 522

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = +1

Query: 97  RTVVMEVEIR*GVCNNSPAESTSPENGWR*SARPTPGHLGERHAPMSRRARRPLQNPGRE 276
           R  +ME E      +N PAE    E   R S  P+ G          RR+ R  Q+PG  
Sbjct: 406 RLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAP 465

Query: 277 PG 282
           PG
Sbjct: 466 PG 467

>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 20) (ADAM-TS
            20) (ADAM-TS20)
          Length = 1906

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 41   CPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTT 145
            C     PRTHK C S +     SWK+   KEC  T
Sbjct: 1452 CSHLHKPRTHKACRSGRCP---SWKANKWKECSVT 1483

>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 106 VMEVEIR*GVCNNSPAESTSPENGWR*SARPTPGHLGERH 225
           V+ + +R G+ N SPAE+  P      S  P P HL  R+
Sbjct: 22  VVFLRLREGLKNQSPAEADKPATSTSPSCPPLPPHLPTRN 61

>NPAS2_MOUSE (P97460) Neuronal PAS domain protein 2 (Neuronal PAS2)|
          Length = 816

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 27/79 (34%), Positives = 37/79 (46%)
 Frame = +1

Query: 229 PMSRRARRPLQNPGREPGRSGRRCKPHSGSCSQFTLQVEAG*LRSMASSRAILVMGLLAA 408
           P S  AR+P      E  R+GR+ K      SQ           + ++S  +L+MG   A
Sbjct: 689 PGSCDARQP-----SEVSRTGRQVKYAQ---SQVMFPSPDSHPTNSSASTPVLLMG--QA 738

Query: 409 VLAPAFSRGRLSPCQPTRA 465
           VL P+F   R SP QP +A
Sbjct: 739 VLHPSFPASRPSPLQPAQA 757

>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer|
            of yellow 3)
          Length = 2006

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 14   RDEPEAGLRCPTAR*PRTHKGCWSI--KTAGR---WSWKSKSAKECV 139
            RD PEA +RC T R  R H  C  +  +  GR   ++W+    K C+
Sbjct: 1707 RDMPEAFIRCYTCR-KRVHPSCVDMPPRMVGRVRNYNWQCAGCKCCI 1752

>RS13_THEVO (Q97B96) 30S ribosomal protein S13P|
          Length = 171

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 15  GMNRKPGYGAQLRANLEPTKGVGRLRQQD 101
           G+  + GY    R NL+PTK +G L++ +
Sbjct: 54  GIGLRLGYAIAERLNLQPTKKIGELKEDE 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,438,483
Number of Sequences: 219361
Number of extensions: 1563397
Number of successful extensions: 4336
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4330
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)