ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast75d01 |
|---|---|
| Clone Library Name | barley_pub |
>PURA_HUMAN (Q00577) Transcriptional activator protein Pur-alpha (Purine-rich| single-stranded DNA-binding protein alpha) Length = 322 Score = 48.1 bits (113), Expect = 9e-06 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%) Frame = +3 Query: 183 LVSKTLQFEHKLFYFDLKENPRGRYLKISEKT-------STTRSTIIVPIAGVAWFLD-- 335 L S+ L E++ +Y DLKEN RGR+L+I + ST TI +P G+ F D Sbjct: 143 LKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSTQGQTIALPAQGLIEFRDAL 202 Query: 336 ---LFDYYIRTDERDV-FSKELRLDTKVFYFDIG 425 + DY + + ++ L +D K F+FD+G Sbjct: 203 AKLIDDYGVEEEPAELPEGTSLTVDNKRFFFDVG 236 Score = 39.7 bits (91), Expect = 0.003 Identities = 16/31 (51%), Positives = 24/31 (77%) Frame = +3 Query: 180 ELVSKTLQFEHKLFYFDLKENPRGRYLKISE 272 EL SK + ++K FY D+K+N +GR+LKI+E Sbjct: 60 ELASKRVDIQNKRFYLDVKQNAKGRFLKIAE 90 Score = 33.5 bits (75), Expect = 0.22 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +3 Query: 195 TLQFEHKLFYFDLKENPRGRYLKISEKTSTTRSTIIVPIAGVAWFLDLFDYY 350 +L ++K F+FD+ N G ++++SE T R++I VP A F F Y Sbjct: 223 SLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAKFGHTFCKY 274
>PURA_MOUSE (P42669) Transcriptional activator protein Pur-alpha (Purine-rich| single-stranded DNA-binding protein alpha) Length = 321 Score = 48.1 bits (113), Expect = 9e-06 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%) Frame = +3 Query: 183 LVSKTLQFEHKLFYFDLKENPRGRYLKISEKT-------STTRSTIIVPIAGVAWFLD-- 335 L S+ L E++ +Y DLKEN RGR+L+I + ST TI +P G+ F D Sbjct: 142 LKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSTQGQTIALPAQGLIEFRDAL 201 Query: 336 ---LFDYYIRTDERDV-FSKELRLDTKVFYFDIG 425 + DY + + ++ L +D K F+FD+G Sbjct: 202 AKLIDDYGVEEEPAELPEGTSLTVDNKRFFFDVG 235 Score = 39.7 bits (91), Expect = 0.003 Identities = 16/31 (51%), Positives = 24/31 (77%) Frame = +3 Query: 180 ELVSKTLQFEHKLFYFDLKENPRGRYLKISE 272 EL SK + ++K FY D+K+N +GR+LKI+E Sbjct: 59 ELASKRVDIQNKRFYLDVKQNAKGRFLKIAE 89 Score = 33.5 bits (75), Expect = 0.22 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +3 Query: 195 TLQFEHKLFYFDLKENPRGRYLKISEKTSTTRSTIIVPIAGVAWFLDLFDYY 350 +L ++K F+FD+ N G ++++SE T R++I VP A F F Y Sbjct: 222 SLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAKFGHTFCKY 273
>PURB_MOUSE (O35295) Transcriptional activator protein Pur-beta (Purine-rich| element-binding protein B) (Vascular actin single-stranded DNA-binding factor 2 p44 component) Length = 323 Score = 42.7 bits (99), Expect = 4e-04 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = +3 Query: 180 ELVSKTLQFEHKLFYFDLKENPRGRYLKISE-KTSTTRSTIIVPIAGVAWFLDLFDYYI 353 EL SK L ++K FY D+K+N +GR+LKI+E ++S + + +A A F D +I Sbjct: 44 ELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFI 102 Score = 33.9 bits (76), Expect = 0.17 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 39/120 (32%) Frame = +3 Query: 183 LVSKTLQFEHKLFYFDLKENPRGRYLKISEKTS---------------TTRSTIIVPIAG 317 L S+ L E++ +Y DLKEN RGR+L+I + + + TI +P G Sbjct: 130 LKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGGGPGPGGLQSGQTIALPAQG 189 Query: 318 VAWFLD----LFDYYIRTDERDVF--------------------SKELRLDTKVFYFDIG 425 + F D L D Y DE ++ + +D+K F+FD+G Sbjct: 190 LIEFRDALAKLIDDY-GGDEDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVG 248 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 195 TLQFEHKLFYFDLKENPRGRYLKISEKTSTTRSTIIVPIAGVAW 326 ++ + K F+FD+ N G +L++SE + R+ I VP AW Sbjct: 235 SITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFK--AW 276
>PURB_RAT (Q68A21) Transcriptional activator protein Pur-beta (Purine-rich| element-binding protein B) Length = 314 Score = 42.7 bits (99), Expect = 4e-04 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = +3 Query: 180 ELVSKTLQFEHKLFYFDLKENPRGRYLKISE-KTSTTRSTIIVPIAGVAWFLDLFDYYI 353 EL SK L ++K FY D+K+N +GR+LKI+E ++S + + +A A F D +I Sbjct: 35 ELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFI 93 Score = 34.7 bits (78), Expect = 0.098 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 38/119 (31%) Frame = +3 Query: 183 LVSKTLQFEHKLFYFDLKENPRGRYLKISEKTS---------------TTRSTIIVPIAG 317 L S+ L E++ +Y DLKEN RGR+L+I + + + TI +P G Sbjct: 121 LKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGGGPGPGGLQSGQTIALPAQG 180 Query: 318 VAWFLD----LFDYYIRTDER--------------DVFSK-----ELRLDTKVFYFDIG 425 + F D L D Y D+ ++ + + +D+K F+FD+G Sbjct: 181 LIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVG 239 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 195 TLQFEHKLFYFDLKENPRGRYLKISEKTSTTRSTIIVPIAGVAW 326 ++ + K F+FD+ N G +L++SE + R+ I VP AW Sbjct: 226 SITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFK--AW 267
>PURB_HUMAN (Q96QR8) Transcriptional activator protein Pur-beta (Purine-rich| element-binding protein B) Length = 311 Score = 42.7 bits (99), Expect = 4e-04 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = +3 Query: 180 ELVSKTLQFEHKLFYFDLKENPRGRYLKISE-KTSTTRSTIIVPIAGVAWFLDLFDYYI 353 EL SK L ++K FY D+K+N +GR+LKI+E ++S + + +A A F D +I Sbjct: 32 ELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFI 90 Score = 34.7 bits (78), Expect = 0.098 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 38/119 (31%) Frame = +3 Query: 183 LVSKTLQFEHKLFYFDLKENPRGRYLKISEKTS---------------TTRSTIIVPIAG 317 L S+ L E++ +Y DLKEN RGR+L+I + + + TI +P G Sbjct: 118 LKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQG 177 Query: 318 VAWFLD----LFDYYIRTDER--------------DVFSK-----ELRLDTKVFYFDIG 425 + F D L D Y D+ ++ + + +D+K F+FD+G Sbjct: 178 LIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVG 236 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 195 TLQFEHKLFYFDLKENPRGRYLKISEKTSTTRSTIIVPIAGVAW 326 ++ + K F+FD+ N G +L++SE + R+ I VP AW Sbjct: 223 SITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFK--AW 264
>PURBB_XENLA (Q8AVS4) Transcriptional activator protein Pur-beta-B (Purine-rich| element binding protein B-B) Length = 327 Score = 42.4 bits (98), Expect = 5e-04 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = +3 Query: 180 ELVSKTLQFEHKLFYFDLKENPRGRYLKISE-KTSTTRSTIIVPIAGVAWFLDLFDYYI 353 EL SK L ++K FY D+K+N +GR++KI+E ++S + + +A A F D +I Sbjct: 31 ELASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMAVAAEFRDYLGDFI 89 Score = 34.7 bits (78), Expect = 0.098 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 40/121 (33%) Frame = +3 Query: 183 LVSKTLQFEHKLFYFDLKENPRGRYLKISEKTS---------------TTRSTIIVPIAG 317 L S+ L E++ +Y DLKEN RGR+L+I + + + TI +P G Sbjct: 122 LKSEFLVRENRKYYLDLKENQRGRFLRIRQTINRGPGFSGGTGGGPGLQSGQTIALPAQG 181 Query: 318 VAWFLD----LFDYYIRTDERDV---------------------FSKELRLDTKVFYFDI 422 + F D L D Y D+ + + +D+K F+FD+ Sbjct: 182 LIEFRDALAKLIDDYGGEDDEGMGLGSGASGGGAGGGGMYGELPEGTSITVDSKRFFFDV 241 Query: 423 G 425 G Sbjct: 242 G 242 Score = 32.0 bits (71), Expect = 0.64 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +3 Query: 195 TLQFEHKLFYFDLKENPRGRYLKISEKTSTTRSTIIVPIAGVAW 326 ++ + K F+FD+ N G +L++SE + R++I VP+ AW Sbjct: 229 SITVDSKRFFFDVGSNKYGVFLRVSEVKPSYRNSITVPLK--AW 270
>PURB_BRARE (Q6PHK6) Transcriptional activator protein Pur-beta (Purine-rich| element-binding protein B) Length = 296 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = +3 Query: 180 ELVSKTLQFEHKLFYFDLKENPRGRYLKISE-KTSTTRSTIIVPIAGVAWFLDLFDYYI 353 EL SK L ++K FY D+K+N +GR++KI+E ++S + + ++ A F D +I Sbjct: 27 ELASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMSVAAEFRDYLGDFI 85 Score = 35.8 bits (81), Expect = 0.044 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 34/115 (29%) Frame = +3 Query: 183 LVSKTLQFEHKLFYFDLKENPRGRYLKISEKTS-----------------TTRSTIIVPI 311 L S+ L E++ +Y DLKEN RGR+L+I + + TI +P Sbjct: 114 LKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGPGFGVGGGGGPGGGVQAGQTIALPA 173 Query: 312 AGVAWFLD----LFDYYIRTDE-------------RDVFSKELRLDTKVFYFDIG 425 G+ F D L D Y DE + +D+K F+FD+G Sbjct: 174 QGLIEFRDALAKLIDDYGGEDEELSGGPGAAGGYGELPEGTSIMVDSKRFFFDVG 228 Score = 32.3 bits (72), Expect = 0.49 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +3 Query: 195 TLQFEHKLFYFDLKENPRGRYLKISEKTSTTRSTIIVPIAGVAWFLDLFDYY 350 ++ + K F+FD+ N G +L++SE + R++I +P F F Y Sbjct: 215 SIMVDSKRFFFDVGSNKYGVFLRVSEVKPSYRNSITIPFKAWGKFGGAFSRY 266
>PURBA_XENLA (Q6PAC9) Transcriptional activator protein Pur-beta-A (Purine-rich| element-binding protein B-A) Length = 322 Score = 39.7 bits (91), Expect = 0.003 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = +3 Query: 180 ELVSKTLQFEHKLFYFDLKENPRGRYLKISE-KTSTTRSTIIVPIAGVAWFLDLFDYYI 353 EL +K L ++K FY D+K+N +GR++KI+E ++S + + + A F D +I Sbjct: 31 ELATKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMGVAAEFRDYLGDFI 89 Score = 37.0 bits (84), Expect = 0.020 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 37/118 (31%) Frame = +3 Query: 183 LVSKTLQFEHKLFYFDLKENPRGRYLKISEKTS---------------TTRSTIIVPIAG 317 L S+ L E++ +Y DLKEN RGR+L+I + + + TI +P G Sbjct: 122 LKSEFLVRENRKYYLDLKENQRGRFLRIRQTINRGPGFSGGAGGGAGLQSGQTIALPAQG 181 Query: 318 VAWFLD----LFDYYIRTDERDV------------------FSKELRLDTKVFYFDIG 425 + F D L D Y D+ V + +D+K F+FD+G Sbjct: 182 LIEFRDALAKLIDDYGGEDDEGVGLGGAGGGGGGGMYGELPEGTSITVDSKRFFFDVG 239 Score = 32.0 bits (71), Expect = 0.64 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +3 Query: 195 TLQFEHKLFYFDLKENPRGRYLKISEKTSTTRSTIIVPIAGVAW 326 ++ + K F+FD+ N G +L++SE + R++I VP+ AW Sbjct: 226 SITVDSKRFFFDVGSNKYGVFLRVSEVKPSYRNSITVPLK--AW 267
>ARGE_DICDI (P54638) Acetylornithine deacetylase (EC 3.5.1.16)| (Acetylornithinase) (AO) (N-acetylornithinase) (NAO) Length = 448 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +3 Query: 171 SDVELVSKTLQFEHKLFYFDLKENPRGRYLKISEKTSTTRSTIIVPIAG 317 + VELV++ L + FY + K +P+ K + +ST + T+ PIAG Sbjct: 236 NSVELVNEALAEIQRRFYINFKPHPKEAEYKF-DCSSTMKPTLWKPIAG 283
>MOT1_YEAST (P32333) TATA-binding protein-associated factor MOT1 (EC 3.6.1.-)| (TBP-associated factor MOT1) (Modifier of transcription 1) Length = 1867 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/23 (47%), Positives = 18/23 (78%) Frame = -2 Query: 410 EHLGVEA*LLAEDIALVGADVIV 342 EH+ ++A ++A DI L+G DVI+ Sbjct: 694 EHINIDAPMIAGDITLLGLDVIL 716 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,254,494 Number of Sequences: 219361 Number of extensions: 355450 Number of successful extensions: 1369 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1337 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1362 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
