ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UVRC_CHLCH (Q3AQX4) UvrABC system protein C (Protein uvrC) (Exci... 32 0.64
2SWC4_ASPFU (Q4WNY4) SWR1-complex protein 4 30 2.4
3MURG_XANC5 (Q3BXF2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 30 4.1

>UVRC_CHLCH (Q3AQX4) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 629

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +1

Query: 253 DALGVGDKIREHHLLYERLVAFSASTGEAAAEVSLKMQGXSGPHEIRCVKRNFLLETLEN 432
           DA GV  KIRE  LL  + +  + + GE+ A + L+M        I  V    LL+   +
Sbjct: 279 DACGVIFKIREGKLLGSQRIYINNTNGESEASMQLRMLEKFYVESIEPVPDEILLQEALS 338

Query: 433 ELPEGTIR 456
           E  E T+R
Sbjct: 339 EEEEETLR 346



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>SWC4_ASPFU (Q4WNY4) SWR1-complex protein 4|
          Length = 588

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -1

Query: 356 RLTSAAASPVDAEKATSLS*SRWCSLILSPTPRASSARKALVHVLNAYPDARSVADDSST 177
           +LT A ++    + AT+L+       +L PT R     + L+H +N   DAR V++   +
Sbjct: 430 KLTQAKSNVQSQKLATALAELEIPPRLLMPTERVCKEFEKLIHSVNLLLDARKVSEKIES 489

Query: 176 TLR 168
            +R
Sbjct: 490 EIR 492



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>MURG_XANC5 (Q3BXF2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 431

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +3

Query: 270 GQDQGAPPALREAGGLLCIHRRGCRGSEPKDAGXKRSSRNSLREAQLPAGDAGER 434
           G   G PPA++E  GL      G R  +    G  ++S N  R AQL A +   R
Sbjct: 371 GSGDGQPPAVQERAGL------GIRNKQTHKQGSMQTSVNGDRSAQLIATNPQSR 419


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,340,209
Number of Sequences: 219361
Number of extensions: 778094
Number of successful extensions: 2301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2301
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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