>CYSPL_LYCES (P20721) Low-temperature-induced cysteine proteinase precursor (EC|
           3.4.22.-) (Fragment)
          Length = 346

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 113 PPRPTGAPRSPAKPSPDVGGFFSCRVGS 30
           PP+P  +P SP KP  +   +  C VG+
Sbjct: 239 PPKPAPSPPSPVKPPTECDEYSQCAVGT 266

>ADRB3_MACMU (Q28524) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor)
          Length = 418

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 122 PCAPPRPTGAPRSPAKPSP 66
           PCA  RP  +PR+P +P P
Sbjct: 371 PCAADRPASSPRAPLRPGP 389

>BFSP1_BOVIN (Q06002) Filensin (Beaded filament structural protein 1)|
          Length = 756

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 4   KKQSPARKGEPTRQEKKPPT-SGDGFAGDRGAPVGRG 111
           K + P  KG+  ++E  PP   GDG   + G P G+G
Sbjct: 543 KGEPPEGKGDSVKEEGGPPEGKGDGVKEEGGPPEGKG 579



 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 16  PARKGEPTRQEKKPPTS-GDGFAGDRGAPVGRG 111
           P  KG+  ++E  PP   GDG   + G P G+G
Sbjct: 561 PEGKGDGVKEEGGPPEGKGDGVKEEGGPPEGKG 593

>T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-related-inducible|
           leucine zipper protein 2) (Tsc-22-like protein THG-1)
          Length = 395

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 122 PCAPPRPTGAP-RSP-AKPSPDVGGFFSCRVGSP 27
           P  P  PTG P R P  +PSPD GG  + R GSP
Sbjct: 30  PPTPQPPTGPPPRLPNGEPSPDPGGKGTPRNGSP 63

>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 1    RKKQSPARKGEPTR---QEKKPPTSGDGFAGDRGAPVGRGGAHG 123
            R   +P + G P +   ++   PT   G  G RGAP+GRG   G
Sbjct: 990  RPMGAPQQGGAPQQGAGRQLPQPTQQGGAPGGRGAPMGRGAPGG 1033

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 28  GEPTRQEKKPPTSGDGFAGDRGAPVGRGGAHG 123
           G P R +   P +G G  G RG   GRGG  G
Sbjct: 433 GRPCRLDFSTPRTGGGSRGGRGGFGGRGGFGG 464

>COBS_BRAJA (Q89Q75) Cobalamin synthase (EC 2.-.-.-)|
          Length = 260

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 19  ARKGEPTRQEKKPPTSGDGFAGDRGAPVGRGGA 117
           AR G P      PP   DG +   GAP GR  A
Sbjct: 157 ARAGVPAFMSLVPPARPDGLSASAGAPPGRSVA 189

>CD5R2_HUMAN (Q13319) Cyclin-dependent kinase 5 activator 2 precursor (CDK5|
           activator 2) (Cyclin-dependent kinase 5 regulatory
           subunit 2) (P39) (P39I)
          Length = 367

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 22  RKGEPTRQEKKPPTSGDGFAGDRGAP-VGRGG 114
           R G    ++KK P +GD   G  GAP VG+GG
Sbjct: 17  RPGGLPEEKKKAPPAGDEALGGYGAPPVGKGG 48

>WNT6_HUMAN (Q9Y6F9) Protein Wnt-6 precursor|
          Length = 365

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 116 APPRPTGAPRSPAKPSP 66
           APPRP+G P +P  P P
Sbjct: 141 APPRPSGLPGTPGPPGP 157

>HES3_RAT (Q04667) Transcription factor HES-3 (Hairy and enhancer of split 3)|
          Length = 175

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
 Frame = -1

Query: 125 SPC-----APPRPTGAPRSPAKPSPDVGGFFSCRVG 33
           SPC     AP  P G  +SP  P P +GG      G
Sbjct: 115 SPCLPAIWAPGPPAGGSQSPQSPFPPLGGLLESSTG 150

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 1    RKKQSPARKGEPTRQEKKPPTSGDGFAGDRGAPVGRG 111
            ++++ P RK E  ++E  PP    GF G +  P G G
Sbjct: 1562 KRRERPPRKPELLQEESLPPPHSSGFLGSK--PEGPG 1596

>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
           (Endostatin-XV)]
          Length = 1367

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -1

Query: 122 PCAPPRPTGAPRSPAKPSPDVGGFFSCRVGSP 27
           P  PP P G+P  P KP  DV   F    GSP
Sbjct: 606 PPGPPGPPGSPGIPGKPGTDV---FMGPPGSP 634

>GLI4_HUMAN (P10075) Zinc finger protein GLI4 (Krueppel-related zinc finger|
           protein 4) (HKR4 protein)
          Length = 376

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 122 PCAPPRPTGAPRSPAKPSPDVG 57
           P + P+P  APRSP   +PD G
Sbjct: 74  PDSEPKPEQAPRSPGSQAPDEG 95

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 1    RKKQSPARKGEPTRQEKKPPTSGDGFAGDRGAPVGRG 111
            ++++ P RK E  ++E  PP    GF G +  P G G
Sbjct: 1559 KRRERPPRKPELLQEESLPPPHSSGFLGSK--PEGPG 1593

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 125 SPCAPPRPTGAPRSPAKPSP 66
           SP  P  P+ AP SPA PSP
Sbjct: 72  SPAPPSPPSPAPPSPAPPSP 91



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 125 SPCAPPRPTGAPRSPAKPSP 66
           SP +P  P+ AP SPA PSP
Sbjct: 77  SPPSPAPPSPAPPSPAPPSP 96

>COL6_CAEEL (P18831) Cuticle collagen 6 (Protein roller-8)|
          Length = 329

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 7   KQSPARKGEPTRQEKKPPTSGDGFAGDRGAPVGRGGAHG 123
           K  P  KG P    +   +  DG AG  G P+GR G  G
Sbjct: 200 KGPPGPKGSPGEPPQDGKSGDDGMAGQPG-PIGRPGRDG 237

>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 110 PRPTGAPRSPAKPSPDVGGFFSCRVGSPFLAG 15
           PRP G PR   KP+P  G        +PF  G
Sbjct: 181 PRPGGMPRPMGKPAPKPGARAPRVANNPFSTG 212

>Y818_PYRAE (Q8ZYE1) UPF0103 protein PAE0818|
          Length = 281

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 235 HEARGAVVAHLHEGRQWEEPVGEAQLHQELAGLGLAHLR 119
           H   GA VA +  G  WE P+G  ++ +ELA +  +H +
Sbjct: 86  HYGIGAPVAIMKSGA-WETPLGRVEVDRELAEVITSHFK 123

>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +1

Query: 13  SPARKGEPTRQEKKPPTSGDGFAGDRGAPVGRG--GAHGD 126
           SP R G P     K      G  G+RG P G G  G+ GD
Sbjct: 560 SPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGD 599

>IF2C_ARATH (Q9SHI1) Translation initiation factor IF-2, chloroplast precursor|
          Length = 1016

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 125 SPCAPPRPTGAPRSPAKPSPDVGG 54
           +P APP+P   P+ P +P P + G
Sbjct: 242 TPLAPPQPPFRPQPPVRPQPMLQG 265

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 16   PARKGEPTRQEKKPPTSGDGFAGDRG--APVGRGGAHGD 126
            P + G P  Q  + P    G  GDRG   P+G  G  G+
Sbjct: 1458 PGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGE 1496

>MMP15_HUMAN (P51511) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)|
           (MMP-15) (Membrane-type matrix metalloproteinase 2)
           (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix
           metalloproteinase) (MT2-MMP) (MT2MMP) (SMCP-2)
          Length = 669

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 122 PCAPPRPTGAPRSPAKPSPDV 60
           P  PP P G P  P KP P V
Sbjct: 334 PPQPPPPGGKPERPPKPGPPV 354

>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)|
          Length = 1758

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 16  PARKGEPTRQEKKP-PTSGDGFAGDRGAPVGRGGAHG 123
           P +KGEPT+   +P P    G  G+ G P G+ G  G
Sbjct: 599 PGQKGEPTQLTLRPGPPGYPGLKGENGFP-GQPGVDG 634

>PAWR_HUMAN (Q96IZ0) PRKC apoptosis WT1 regulator protein (Prostate apoptosis|
           response-4 protein) (Par-4)
          Length = 340

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 104 PTGAPRSPAKPSPDVGGFFSCRVGSPFL 21
           P GAP +PA P P   G  +C VGS  L
Sbjct: 74  PGGAPAAPAVPGP---GGVNCAVGSAML 98

>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I|
          Length = 1794

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 122  PCAPPRPTGAPRSPAKPSP 66
            P APP P G P +P  P P
Sbjct: 1718 PSAPPMPAGPPSAPPPPLP 1736

>IF2_CORJK (Q4JV51) Translation initiation factor IF-2|
          Length = 922

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
 Frame = +1

Query: 7   KQSPARKGEPTRQEKKP-----PTSGDGFAGDRGAPVGRGGAHG 123
           KQ   R+  P      P     P+  D F G R    GRGG HG
Sbjct: 220 KQGGGRRPSPAMMPSHPNPAQMPSKSDNFGGGR----GRGGRHG 259

>FBRL_DEBHA (Q6BQ34) Fibrillarin|
          Length = 329

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 64  SGDGFAGDRGAPVGRGGAHG 123
           S  GF GDRG   GRGG  G
Sbjct: 50  SRGGFGGDRGGRGGRGGPRG 69

>CO6A2_CHICK (P15988) Collagen alpha-2(VI) chain precursor|
          Length = 1022

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
 Frame = +1

Query: 7   KQSPARKGEPTRQEKKPPTSGDGFAGDRGAP-----------VGRGGAHGD 126
           K  P R+G+P  +  K    G G  G+RG P           VG  GA GD
Sbjct: 420 KGEPGRRGDPGTKGSK---GGPGAKGERGDPGPEGPRGLPGEVGNKGARGD 467

>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
           (Endostatin-XV) (Restin) (Related to endostatin)]
          Length = 1388

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -1

Query: 122 PCAPPRPTGAPRSPAKPSPDVGGFFSCRVGSP 27
           P  PP P G P  P KP  DV   F    GSP
Sbjct: 620 PPGPPGPPGLPGIPGKPGTDV---FMGPPGSP 648

>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor|
          Length = 677

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 16  PARKGEPTRQEKKPPTSGDGFAGDRGAPVGRGGAHG 123
           P   GEP +Q K+ P    G +G++G P G  G  G
Sbjct: 196 PGALGEPGQQGKQGPKGDVGVSGEQGVP-GPPGPQG 230

>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 16  PARKGEPTRQEKKPPTSGDGFAGDRGAPVGRGGAHGD 126
           P  +G P  + +  PT   GFAG +G+  G+ G  G+
Sbjct: 824 PGSRGNPGSRGENGPTGAVGFAGPQGSD-GQPGVKGE 859

>VGLC_HHV1K (P28986) Glycoprotein C precursor|
          Length = 511

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 125 SPCAPPRPTGAPRSPAKPSPD 63
           SP   P+PT  P+SP   +PD
Sbjct: 83  SPPTTPKPTSTPKSPPTSTPD 103

>VGLC_HHV11 (P10228) Glycoprotein C precursor|
          Length = 511

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 125 SPCAPPRPTGAPRSPAKPSPD 63
           SP   P+PT  P+SP   +PD
Sbjct: 83  SPPTTPKPTSTPKSPPTSTPD 103

>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 110 PRPTGAPRSPAKPSPDVGGFFSCRVGSPFLAG 15
           PRP   PR  AKP P  G        +PF  G
Sbjct: 163 PRPNAMPRPMAKPGPKPGARAPRVANNPFSTG 194

>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 1168

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -2

Query: 193 RQWEEPV---GEAQLHQELAGLGLA 128
           R WE+P+   GE  L QEL G+GL+
Sbjct: 458 RPWEDPMPETGERHLAQELRGVGLS 482


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.141    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,816,658
Number of Sequences: 219361
Number of extensions: 735932
Number of successful extensions: 3861
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 2963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3839
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)