| Clone Name | bast75b07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I18, full insert sequence Length = 1373 Score = 307 bits (155), Expect = 2e-80 Identities = 336/397 (84%), Gaps = 6/397 (1%) Strand = Plus / Plus Query: 79 ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 138 |||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||| Sbjct: 92 ggagcaatggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctc 151 Query: 139 acgtggtcggccacggg------cgccggcgccccctccgcctcgccggccgccccgtcc 192 ||||||||||| ||||| ||||| |||| || | |||||||||| |||| | ||| Sbjct: 152 acgtggtcggcgacggggcccgacgccgccgccgccgcggcctcgccggtcgcctcctcc 211 Query: 193 cgccccagtctcaagccggctggggggatctcgccggccatgttcggcgcgccggtgagc 252 |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||| Sbjct: 212 cgccccagcctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagc 271 Query: 253 gagcacgacgccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatg 312 ||| | || || |||||||||||||| |||||| | | | | || || |||||| | Sbjct: 272 gagaaggaggcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagtta 331 Query: 313 aaggaaatgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtct 372 || ||||||||||| ||||||||||| ||||| || ||||| ||| |||||||||| || Sbjct: 332 aaagaaatgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggct 391 Query: 373 tcaaatcctgncaacagaacttctgtgaggatgtatcagcaaactgtaactggagtaagt 432 |||||||||| |||| ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 392 tcaaatcctgcaaacaaaacttctgtaaggatgtatcagcaaactgtaactggaataagc 451 Query: 433 cagatctcatttagcgcagatggaagcgtttctccaa 469 || |||||||| || || |||||||| |||||||||| Sbjct: 452 caaatctcattcagtgctgatggaagtgtttctccaa 488
>ref|XM_472718.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 918 Score = 295 bits (149), Expect = 7e-77 Identities = 330/391 (84%), Gaps = 6/391 (1%) Strand = Plus / Plus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 |||||||||||| ||||||| ||| ||||||||||||||||| ||||||||||||||| Sbjct: 1 atggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctcacgtgg 60 Query: 145 tcggccacggg------cgccggcgccccctccgcctcgccggccgccccgtcccgcccc 198 ||||| ||||| ||||| |||| || | |||||||||| |||| | ||||||||| Sbjct: 61 tcggcgacggggcccgacgccgccgccgccgcggcctcgccggtcgcctcctcccgcccc 120 Query: 199 agtctcaagccggctggggggatctcgccggccatgttcggcgcgccggtgagcgagcac 258 || ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| | Sbjct: 121 agcctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaag 180 Query: 259 gacgccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaaggaa 318 || || |||||||||||||| |||||| | | | | || || |||||| | || ||| Sbjct: 181 gaggcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagttaaaagaa 240 Query: 319 atgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaat 378 |||||||| ||||||||||| ||||| || ||||| ||| |||||||||| |||||||| Sbjct: 241 atgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggcttcaaat 300 Query: 379 cctgncaacagaacttctgtgaggatgtatcagcaaactgtaactggagtaagtcagatc 438 |||| |||| ||||||||| ||||||||||||||||||||||||||| |||| || ||| Sbjct: 301 cctgcaaacaaaacttctgtaaggatgtatcagcaaactgtaactggaataagccaaatc 360 Query: 439 tcatttagcgcagatggaagcgtttctccaa 469 ||||| || || |||||||| |||||||||| Sbjct: 361 tcattcagtgctgatggaagtgtttctccaa 391
>tpg|BK001566.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) HN1-like protein isoform 1 mRNA, complete cds Length = 1262 Score = 268 bits (135), Expect = 1e-68 Identities = 331/397 (83%), Gaps = 6/397 (1%) Strand = Plus / Plus Query: 79 ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 138 ||||||||||| |||| | || |||| ||| |||||||||||||||| ||||||||| Sbjct: 92 ggagcaatggaaaggggggggcgggtgaggaagccgcacacctcgacgggggacctgctc 151 Query: 139 acgtggtcggccacggg------cgccggcgccccctccgcctcgccggccgccccgtcc 192 ||||||||||| | ||| ||||| |||| || | |||||||||| |||| | ||| Sbjct: 152 acgtggtcggcgagggggcccgacgccgccgccgccgcggcctcgccggtcgcctcctcc 211 Query: 193 cgccccagtctcaagccggctggggggatctcgccggccatgttcggcgcgccggtgagc 252 |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||| Sbjct: 212 cgccccagcctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagc 271 Query: 253 gagcacgacgccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatg 312 ||| | || || |||||||||||||| |||||| | | | | || || |||||| | Sbjct: 272 gagaaggaggcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagtta 331 Query: 313 aaggaaatgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtct 372 || ||||||||||| ||||||||||| ||||| || ||||| ||| |||||||||| || Sbjct: 332 aaagaaatgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggct 391 Query: 373 tcaaatcctgncaacagaacttctgtgaggatgtatcagcaaactgtaactggagtaagt 432 |||||||||| |||| ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 392 tcaaatcctgcaaacaaaacttctgtaaggatgtatcagcaaactgtaactggaataagc 451 Query: 433 cagatctcatttagcgcagatggaagcgtttctccaa 469 || |||||||| || || |||||||| |||||||||| Sbjct: 452 caaatctcattcagtgctgatggaagtgtttctccaa 488
>dbj|AK101129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025P19, full insert sequence Length = 1262 Score = 268 bits (135), Expect = 1e-68 Identities = 331/397 (83%), Gaps = 6/397 (1%) Strand = Plus / Plus Query: 79 ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 138 ||||||||||| |||| | || |||| ||| |||||||||||||||| ||||||||| Sbjct: 92 ggagcaatggaaaggggggggcgggtgaggaagccgcacacctcgacgggggacctgctc 151 Query: 139 acgtggtcggccacggg------cgccggcgccccctccgcctcgccggccgccccgtcc 192 ||||||||||| | ||| ||||| |||| || | |||||||||| |||| | ||| Sbjct: 152 acgtggtcggcgagggggcccgacgccgccgccgccgcggcctcgccggtcgcctcctcc 211 Query: 193 cgccccagtctcaagccggctggggggatctcgccggccatgttcggcgcgccggtgagc 252 |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||| Sbjct: 212 cgccccagcctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagc 271 Query: 253 gagcacgacgccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatg 312 ||| | || || |||||||||||||| |||||| | | | | || || |||||| | Sbjct: 272 gagaaggaggcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagtta 331 Query: 313 aaggaaatgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtct 372 || ||||||||||| ||||||||||| ||||| || ||||| ||| |||||||||| || Sbjct: 332 aaagaaatgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggct 391 Query: 373 tcaaatcctgncaacagaacttctgtgaggatgtatcagcaaactgtaactggagtaagt 432 |||||||||| |||| ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 392 tcaaatcctgcaaacaaaacttctgtaaggatgtatcagcaaactgtaactggaataagc 451 Query: 433 cagatctcatttagcgcagatggaagcgtttctccaa 469 || |||||||| || || |||||||| |||||||||| Sbjct: 452 caaatctcattcagtgctgatggaagtgtttctccaa 488
>gb|AY107167.1| Zea mays PCO149856 mRNA sequence Length = 1497 Score = 220 bits (111), Expect = 3e-54 Identities = 319/388 (82%), Gaps = 3/388 (0%) Strand = Plus / Plus Query: 82 gcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacg 141 ||||||||||||||| |||||| |||| ||||||||| ||||||||||| ||| | Sbjct: 134 gcaatggagagggcggtgccggttcggaagccgcacaccagcacggccgaccttctctcc 193 Query: 142 tggtcggccacgggcgccggcgccccctccgcctcgccggccgccccgtcccgccccagt 201 ||||||||||||| | | | ||| || |||||||||||||| | ||||||||||| Sbjct: 194 tggtcggccacggcccctgacgca---tctgcctcgccggccgcgtcctcccgccccagc 250 Query: 202 ctcaagccggctggggggatctcgccggccatgttcggcgcgccggtgagcgagcacgac 261 ||||||||||| | ||||| |||| || ||||||||||||||||| | |||||| || Sbjct: 251 ctcaagccggccgccgggattacgcctgcgatgttcggcgcgccggtcaccgagcaggag 310 Query: 262 gccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaaggaaatg 321 ||||||||||||||||| |||||||||| | | ||||| || ||| |||| || ||| Sbjct: 311 gccgaggatctgagcaagagtgaaaggaaattttgctccggatcgaagttgaaagagatg 370 Query: 322 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaatcct 381 | |||||||||||| || ||||| |||||||| ||| |||| |||||| ||||||||||| Sbjct: 371 agtgggagtgggattttcgctgagaagagtgaaaatggtgactcagaggcttcaaatcct 430 Query: 382 gncaacagaacttctgtgaggatgtatcagcaaactgtaactggagtaagtcagatctca 441 | |||| ||||| |||||||||| ||||||||||| |||||| |||| ||||| ||| Sbjct: 431 gctaacaagacttccttgaggatgtaccagcaaactgtgactggaataagccagatttca 490 Query: 442 tttagcgcagatggaagcgtttctccaa 469 |||||||| |||||||| ||||| |||| Sbjct: 491 tttagcgctgatggaagtgtttcaccaa 518
>gb|AY596573.1| Saccharum officinarum clone SCCCLR1C01D11, complete sequence Length = 1372 Score = 214 bits (108), Expect = 2e-52 Identities = 316/385 (82%), Gaps = 3/385 (0%) Strand = Plus / Plus Query: 80 gagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctca 139 ||||||||||||||||| |||||| |||| ||||||||| ||||||||||| ||| Sbjct: 149 gagcaatggagagggcggtgccggttcggaagccgcacaccaacacggccgaccttctct 208 Query: 140 cgtggtcggccacgggcgccggcgccccctccgcctcgccggccgccccgtcccgcccca 199 | ||||||||||||||| | | ||| || |||||||||||||| | |||||||||| Sbjct: 209 cctggtcggccacgggccctgacgca---tctgcctcgccggccgcgtcctcccgcccca 265 Query: 200 gtctcaagccggctggggggatctcgccggccatgttcggcgcgccggtgagcgagcacg 259 | ||||||||||| | |||||| ||||||| ||||||||||||||||| | |||||| | Sbjct: 266 gcctcaagccggccgcggggattacgccggcgatgttcggcgcgccggtcaccgagcagg 325 Query: 260 acgccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaaggaaa 319 | ||||||||||||||||| |||||||||| | | || || |||||| |||| |||| Sbjct: 326 aggccgaggatctgagcaagagtgaaaggaaattttgctctggctcaaagttgaaagaaa 385 Query: 320 tgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaatc 379 ||| ||| |||||||| || |||| |||||||| ||| ||||||||||| |||| |||| Sbjct: 386 tgagtggaagtgggatcttcactgagaagagtgaaaatggtgattcagaggcttcgaatc 445 Query: 380 ctgncaacagaacttctgtgaggatgtatcagcaaactgtaactggagtaagtcagatct 439 ||| |||| ||||| |||||||||| ||||||||||| || || |||| ||||| | Sbjct: 446 ctgctaacaagacttccttgaggatgtaccagcaaactgtgaccggtataagccagattt 505 Query: 440 catttagcgcagatggaagcgtttc 464 ||||||| || |||||||| ||||| Sbjct: 506 catttagtgctgatggaagtgtttc 530
>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15, complete sequence Length = 143109 Score = 103 bits (52), Expect = 5e-19 Identities = 114/135 (84%), Gaps = 6/135 (4%) Strand = Plus / Minus Query: 79 ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 138 |||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||| Sbjct: 110532 ggagcaatggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctc 110473 Query: 139 acgtggtcggccacggg------cgccggcgccccctccgcctcgccggccgccccgtcc 192 ||||||||||| ||||| ||||| |||| || | |||||||||| |||| | ||| Sbjct: 110472 acgtggtcggcgacggggcccgacgccgccgccgccgcggcctcgccggtcgcctcctcc 110413 Query: 193 cgccccagtctcaag 207 |||||||| |||||| Sbjct: 110412 cgccccagcctcaag 110398 Score = 97.6 bits (49), Expect = 3e-17 Identities = 84/96 (87%) Strand = Plus / Minus Query: 316 gaaatgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttca 375 ||||||||||| ||||||||||| ||||| || ||||| ||| |||||||||| ||||| Sbjct: 109058 gaaatgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggcttca 108999 Query: 376 aatcctgncaacagaacttctgtgaggatgtatcag 411 ||||||| |||| ||||||||| |||||||||||| Sbjct: 108998 aatcctgcaaacaaaacttctgtaaggatgtatcag 108963 Score = 89.7 bits (45), Expect = 8e-15 Identities = 66/73 (90%) Strand = Plus / Minus Query: 206 agccggctggggggatctcgccggccatgttcggcgcgccggtgagcgagcacgacgccg 265 ||||||| ||||||||| ||||||| |||||||||||||||||||||||| | || || | Sbjct: 110262 agccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggaggcgg 110203 Query: 266 aggatctgagcaa 278 ||||||||||||| Sbjct: 110202 aggatctgagcaa 110190 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 409 cagcaaactgtaactggagtaagtcagatctcatttagcgcagatggaagcgtttctcca 468 |||||||||||||||||| |||| || |||||||| || || |||||||| ||||||||| Sbjct: 108579 cagcaaactgtaactggaataagccaaatctcattcagtgctgatggaagtgtttctcca 108520 Query: 469 a 469 | Sbjct: 108519 a 108519
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 103 bits (52), Expect = 5e-19 Identities = 114/135 (84%), Gaps = 6/135 (4%) Strand = Plus / Minus Query: 79 ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 138 |||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||| Sbjct: 22773336 ggagcaatggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctc 22773277 Query: 139 acgtggtcggccacggg------cgccggcgccccctccgcctcgccggccgccccgtcc 192 ||||||||||| ||||| ||||| |||| || | |||||||||| |||| | ||| Sbjct: 22773276 acgtggtcggcgacggggcccgacgccgccgccgccgcggcctcgccggtcgcctcctcc 22773217 Query: 193 cgccccagtctcaag 207 |||||||| |||||| Sbjct: 22773216 cgccccagcctcaag 22773202 Score = 97.6 bits (49), Expect = 3e-17 Identities = 84/96 (87%) Strand = Plus / Minus Query: 316 gaaatgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttca 375 ||||||||||| ||||||||||| ||||| || ||||| ||| |||||||||| ||||| Sbjct: 22771862 gaaatgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggcttca 22771803 Query: 376 aatcctgncaacagaacttctgtgaggatgtatcag 411 ||||||| |||| ||||||||| |||||||||||| Sbjct: 22771802 aatcctgcaaacaaaacttctgtaaggatgtatcag 22771767 Score = 89.7 bits (45), Expect = 8e-15 Identities = 66/73 (90%) Strand = Plus / Minus Query: 206 agccggctggggggatctcgccggccatgttcggcgcgccggtgagcgagcacgacgccg 265 ||||||| ||||||||| ||||||| |||||||||||||||||||||||| | || || | Sbjct: 22773066 agccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggaggcgg 22773007 Query: 266 aggatctgagcaa 278 ||||||||||||| Sbjct: 22773006 aggatctgagcaa 22772994 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 409 cagcaaactgtaactggagtaagtcagatctcatttagcgcagatggaagcgtttctcca 468 |||||||||||||||||| |||| || |||||||| || || |||||||| ||||||||| Sbjct: 22771383 cagcaaactgtaactggaataagccaaatctcattcagtgctgatggaagtgtttctcca 22771324 Query: 469 a 469 | Sbjct: 22771323 a 22771323 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 155 gcgccggcgccccctccgcctc 176 |||||||||||||||||||||| Sbjct: 16431708 gcgccggcgccccctccgcctc 16431687 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gccggcgccccctccgcctc 176 |||||||||||||||||||| Sbjct: 16431511 gccggcgccccctccgcctc 16431492
>ref|XM_466380.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1150 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 400 aggatgtatcagcaaactgtaactggagtaagtcagatctcatttagcgcagatggaagc 459 |||||||||||||||||||||||||| |||||||||| |||||||| || || || ||| Sbjct: 393 aggatgtatcagcaaactgtaactggcataagtcagatatcatttagtgctgaggggagc 452 Query: 460 gtttctcc 467 || ||||| Sbjct: 453 gtgtctcc 460 Score = 69.9 bits (35), Expect = 7e-09 Identities = 68/79 (86%) Strand = Plus / Plus Query: 196 cccagtctcaagccggctggggggatctcgccggccatgttcggcgcgccggtgagcgag 255 ||||| ||||||||||| || |||||| ||||||| |||||||| |||||||||| ||| Sbjct: 183 cccagcctcaagccggccggtgggatcacgccggcgatgttcggagcgccggtgaccgac 242 Query: 256 cacgacgccgaggatctga 274 | || ||||||||||||| Sbjct: 243 ctggaggccgaggatctga 261 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 304 tcaaagatgaaggaaatgactgggagtgggatattt 339 |||||||||||||||||||| |||||||| |||||| Sbjct: 285 tcaaagatgaaggaaatgaccgggagtggaatattt 320 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 |||||||||||| ||||||||||| ||||| |||||||||||| |||||||| ||| Sbjct: 57 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 116 Query: 145 tcgg 148 |||| Sbjct: 117 tcgg 120
>dbj|AK059246.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G05, full insert sequence Length = 1150 Score = 69.9 bits (35), Expect = 7e-09 Identities = 68/79 (86%) Strand = Plus / Plus Query: 196 cccagtctcaagccggctggggggatctcgccggccatgttcggcgcgccggtgagcgag 255 ||||| ||||||||||| || |||||| ||||||| |||||||| |||||||||| ||| Sbjct: 183 cccagcctcaagccggccggtgggatcacgccggcgatgttcggagcgccggtgaccgac 242 Query: 256 cacgacgccgaggatctga 274 | || ||||||||||||| Sbjct: 243 ctggaggccgaggatctga 261 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 400 aggatgtatcagcaaactgtaactggagtaagtcagatctcatttagcgcagatggaagc 459 |||||||||||||||||||||||||| ||||||||| |||||||| || || || ||| Sbjct: 393 aggatgtatcagcaaactgtaactggcacaagtcagatatcatttagtgctgaggggagc 452 Query: 460 gtttctcc 467 || ||||| Sbjct: 453 gtgtctcc 460 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 304 tcaaagatgaaggaaatgactgggagtgggatattt 339 |||||||||||||||||||| |||||||| |||||| Sbjct: 285 tcaaagatgaaggaaatgaccgggagtggaatattt 320 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 |||||||||||| ||||||||||| ||||| |||||||||||| |||||||| ||| Sbjct: 57 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 116 Query: 145 tcgg 148 |||| Sbjct: 117 tcgg 120
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 206 agccggctggggggatctcgccggccatgttcggcgcgccggtgagcgagcacgacgccg 265 ||||||| || |||||| ||||||| |||||||| |||||||||| ||| | || |||| Sbjct: 22065976 agccggccggtgggatcacgccggcgatgttcggagcgccggtgaccgacctggaggccg 22065917 Query: 266 aggatctga 274 ||||||||| Sbjct: 22065916 aggatctga 22065908 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 |||||||||||| ||||||||||| ||||| |||||||||||| |||||||| ||| Sbjct: 22066221 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 22066162 Query: 145 tcgg 148 |||| Sbjct: 22066161 tcgg 22066158 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 304 tcaaagatgaaggaaatgactgggagtgggatattt 339 |||||||||||||||||||| |||||||| |||||| Sbjct: 22064843 tcaaagatgaaggaaatgaccgggagtggaatattt 22064808 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 409 cagcaaactgtaactggagtaagtcagatctcatttagcgcagatggaagcgtttctcc 467 ||||||||||||||||| |||||||||| |||||||| || || || ||||| ||||| Sbjct: 22064407 cagcaaactgtaactggcataagtcagatatcatttagtgctgaggggagcgtgtctcc 22064349 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 234 gttcggcgcgccggtgagcgag 255 |||||||||||||||||||||| Sbjct: 31843412 gttcggcgcgccggtgagcgag 31843433
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 206 agccggctggggggatctcgccggccatgttcggcgcgccggtgagcgagcacgacgccg 265 ||||||| || |||||| ||||||| |||||||| |||||||||| ||| | || |||| Sbjct: 39875 agccggccggtgggatcacgccggcgatgttcggagcgccggtgaccgacctggaggccg 39816 Query: 266 aggatctga 274 ||||||||| Sbjct: 39815 aggatctga 39807 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 |||||||||||| ||||||||||| ||||| |||||||||||| |||||||| ||| Sbjct: 40120 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 40061 Query: 145 tcgg 148 |||| Sbjct: 40060 tcgg 40057 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 304 tcaaagatgaaggaaatgactgggagtgggatattt 339 |||||||||||||||||||| |||||||| |||||| Sbjct: 38742 tcaaagatgaaggaaatgaccgggagtggaatattt 38707 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 409 cagcaaactgtaactggagtaagtcagatctcatttagcgcagatggaagcgtttctcc 467 ||||||||||||||||| |||||||||| |||||||| || || || ||||| ||||| Sbjct: 38306 cagcaaactgtaactggcataagtcagatatcatttagtgctgaggggagcgtgtctcc 38248
>gb|AY596580.1| Saccharum officinarum clone SCCCCL3120B06, complete sequence Length = 1308 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 |||||| ||||| |||||||| ||||| | |||||||| ||||||||||| ||| ||||| Sbjct: 1218 atggagcgggcggcgccggtgaggagctcccacacctccacggccgacctactcgcgtgg 1159
>gb|AY105912.1| Zea mays PCO095569 mRNA sequence Length = 1283 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 |||||| ||||| |||||||| ||||| | |||||||| ||||||||||| ||| ||||| Sbjct: 132 atggagcgggcggcgccggtgaggagctcccacacctccacggccgacctactcgcgtgg 191
>ref|XM_479197.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Plus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 ||||||||| || |||||||| ||| | ||||| ||||||||||||||||| |||||| Sbjct: 180 atggagaggccggcgccggtgaggaagtcccacacgtcgacggccgacctgctgacgtgg 239
>gb|AY596563.1| Saccharum officinarum clone SCJLLR2013G10, complete sequence Length = 1194 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Plus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 |||||||||||| | || ||| |||| | |||||||||||||||| ||||||| ||||| Sbjct: 103 atggagagggcggcccccgtgaggagttcccacacctcgacggccggcctgctcgcgtgg 162
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Minus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 ||||||||| || |||||||| ||| | ||||| ||||||||||||||||| |||||| Sbjct: 25753994 atggagaggccggcgccggtgaggaagtcccacacgtcgacggccgacctgctgacgtgg 25753935
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 162 cgccccctccgcctcgccggccgccccg 189 ||||||||||||| |||||||||||||| Sbjct: 2827622 cgccccctccgccacgccggccgccccg 2827649
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524E08 Length = 154696 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Minus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 ||||||||| || |||||||| ||| | ||||| ||||||||||||||||| |||||| Sbjct: 71156 atggagaggccggcgccggtgaggaagtcccacacgtcgacggccgacctgctgacgtgg 71097
>dbj|AK063642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G12, full insert sequence Length = 1305 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Plus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 ||||||||| || |||||||| ||| | ||||| ||||||||||||||||| |||||| Sbjct: 180 atggagaggccggcgccggtgaggaagtcccacacgtcgacggccgacctgctgacgtgg 239
>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence Length = 129655 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 170 ccgcctcgccggccgccccgtcccgcc 196 |||||||||||||||||||| |||||| Sbjct: 48192 ccgcctcgccggccgccccgacccgcc 48166
>ref|XM_469255.1| Oryza sativa (japonica cultivar-group), mRNA Length = 510 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 170 ccgcctcgccggccgccccgtcccgcc 196 |||||||||||||||||||| |||||| Sbjct: 224 ccgcctcgccggccgccccgacccgcc 198
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 237 cggcgcgccggtgagcgagcacg 259 ||||||||||||||||||||||| Sbjct: 908311 cggcgcgccggtgagcgagcacg 908333
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 170 ccgcctcgccggccgccccgtcccgcc 196 |||||||||||||||||||| |||||| Sbjct: 26400152 ccgcctcgccggccgccccgacccgcc 26400126 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cacacctcgacggccgacct 134 |||||||||||||||||||| Sbjct: 15299085 cacacctcgacggccgacct 15299104
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 170 ccgcctcgccggccgccccgtcccgcc 196 |||||||||||||||||||| |||||| Sbjct: 26491461 ccgcctcgccggccgccccgacccgcc 26491435 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cacacctcgacggccgacct 134 |||||||||||||||||||| Sbjct: 15293619 cacacctcgacggccgacct 15293638
>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2 mRNA Length = 1129 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 gttcggcgcgccggtgagcgag 255 |||||||||||||||||||||| Sbjct: 344 gttcggcgcgccggtgagcgag 323
>ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1127 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 gttcggcgcgccggtgagcgag 255 |||||||||||||||||||||| Sbjct: 342 gttcggcgcgccggtgagcgag 321
>ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 gttcggcgcgccggtgagcgag 255 |||||||||||||||||||||| Sbjct: 343 gttcggcgcgccggtgagcgag 322
>gb|AC133459.9| Mus musculus chromosome 12, clone RP23-383O15, complete sequence Length = 227171 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcccgcccc 198 |||| ||||||| |||||||||||| |||||||| Sbjct: 102376 ccccgccgcctccccggccgccccgccccgcccc 102343
>emb|AL606995.3|OSJN00131 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085H11, complete sequence Length = 132394 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 155 gcgccggcgccccctccgcctc 176 |||||||||||||||||||||| Sbjct: 92274 gcgccggcgccccctccgcctc 92253 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gccggcgccccctccgcctc 176 |||||||||||||||||||| Sbjct: 92077 gccggcgccccctccgcctc 92058
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 253 gagcacgacgccgaggatctga 274 |||||||||||||||||||||| Sbjct: 1812777 gagcacgacgccgaggatctga 1812756
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 234 gttcggcgcgccggtgagcgag 255 |||||||||||||||||||||| Sbjct: 4413 gttcggcgcgccggtgagcgag 4434
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 234 gttcggcgcgccggtgagcgag 255 |||||||||||||||||||||| Sbjct: 139210 gttcggcgcgccggtgagcgag 139231
>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full insert sequence Length = 1110 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 gttcggcgcgccggtgagcgag 255 |||||||||||||||||||||| Sbjct: 343 gttcggcgcgccggtgagcgag 322
>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full insert sequence Length = 1128 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 gttcggcgcgccggtgagcgag 255 |||||||||||||||||||||| Sbjct: 344 gttcggcgcgccggtgagcgag 323
>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full insert sequence Length = 1127 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 gttcggcgcgccggtgagcgag 255 |||||||||||||||||||||| Sbjct: 342 gttcggcgcgccggtgagcgag 321
>dbj|AK062945.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-C02, full insert sequence Length = 582 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gcgccggcgccccctccgcctc 176 |||||||||||||||||||||| Sbjct: 16 gcgccggcgccccctccgcctc 37 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gccggcgccccctccgcctc 176 |||||||||||||||||||| Sbjct: 213 gccggcgccccctccgcctc 232
>gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, complete sequence Length = 246636 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 165 cccctccgcctcgccggccgccccgtcccgcccc 198 |||| ||||||| |||||||||||| |||||||| Sbjct: 216886 ccccgccgcctccccggccgccccgccccgcccc 216919
>gb|M21635.1|DUKFASA Duck (A.platyrhynchos) S-acyl fatty acid synthase thioesterase gene, complete cds Length = 9138 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cctcgccggccgccccgtcccg 194 |||||||||||||||||||||| Sbjct: 444 cctcgccggccgccccgtcccg 423
>gb|AY271621.1| Pseudmonas fluorescens ATCC 17400 quinolobactin biosynthesis, excretion and uptake gene cluster, complete sequence Length = 18788 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 gcagatggaagcgtttctcca 468 ||||||||||||||||||||| Sbjct: 16176 gcagatggaagcgtttctcca 16156
>gb|AE005714.1| Caulobacter crescentus CB15 section 40 of 359 of the complete genome Length = 10440 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 170 ccgcctcgccggccgccccgtcccgcccc 198 ||||||||| ||||||||||||| ||||| Sbjct: 9774 ccgcctcgcaggccgccccgtccagcccc 9802
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 ccctccgcctcgccggccgcc 186 ||||||||||||||||||||| Sbjct: 744449 ccctccgcctcgccggccgcc 744469
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 ccccctccgcctcgccggccg 184 ||||||||||||||||||||| Sbjct: 1685086 ccccctccgcctcgccggccg 1685066
>gb|AE004539.1| Pseudomonas aeruginosa PAO1, section 100 of 529 of the complete genome Length = 25022 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 ccctccgcctcgccggccgcc 186 ||||||||||||||||||||| Sbjct: 13594 ccctccgcctcgccggccgcc 13614
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 161 gcgccccctccgcctcgccggccgccccg 189 ||||||||||| | ||||||||||||||| Sbjct: 512 gcgccccctccacgtcgccggccgccccg 540
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 gtggtcggccacgggcgccgg 161 ||||||||||||||||||||| Sbjct: 147537 gtggtcggccacgggcgccgg 147557
>ref|NM_188144.1| Oryza sativa (japonica cultivar-group), Ozsa8576 predicted mRNA Length = 1248 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 cgccggtgagcgagcacgacgccg 265 |||||| ||||||||||||||||| Sbjct: 535 cgccggcgagcgagcacgacgccg 512
>gb|AC165964.3| Mus musculus BAC clone RP23-334H24 from chromosome 8, complete sequence Length = 233538 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 acttctgtgaggatgtatca 410 |||||||||||||||||||| Sbjct: 96371 acttctgtgaggatgtatca 96390
>ref|NM_193610.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 876 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 155 gcgccggcgccccctccgcctcgccggc 182 |||||||| || |||||||||||||||| Sbjct: 219 gcgccggctccgcctccgcctcgccggc 192
>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete sequence Length = 137709 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cacacctcgacggccgacct 134 |||||||||||||||||||| Sbjct: 38263 cacacctcgacggccgacct 38244
>ref|XM_422527.1| PREDICTED: Gallus gallus similar to KIAA0473 protein (LOC424698), mRNA Length = 3429 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cggccgccccgtcccgcccc 198 |||||||||||||||||||| Sbjct: 210 cggccgccccgtcccgcccc 229
>gb|AC157088.2| Pan troglodytes BAC clone CH251-497H13 from chromosome unknown, complete sequence Length = 220527 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 17856 cccctctgcctggccggccgccccgtcc 17829
>emb|Z70756.1|CET06E4 Caenorhabditis elegans Cosmid T06E4, complete sequence Length = 38773 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 tgggatatttgctgaaaaga 349 |||||||||||||||||||| Sbjct: 37634 tgggatatttgctgaaaaga 37653
>gb|AC113554.9| Homo sapiens chromosome 17, clone CTD-2501B8, complete sequence Length = 179509 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 148729 cccctctgcctggccggccgccccgtcc 148702
>emb|Z83841.1|HS323B6 Human DNA sequence from clone RP3-323B6 on chromosome Xq11-12 Contains a adaptor-related protein complex 1 (AP1M2) pseudogene, a pseudogene similar to part of TLE family (transducin-like enhancer of split (E(sp1) homolog, Drosophila)) and two CpG islands, complete sequence Length = 112762 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 32864 cccctctgcctggccggccgccccgtcc 32837
>emb|AL592295.25| Human DNA sequence from clone RP11-122G18 on chromosome 1 Contains the 3' end of a novel gene, the MPZ gene for myelin protein zero (Charcot-Marie-Tooth neuropathy 1B), the SDHC gene for succinate dehydrogenase complex subunit C integral membrane protein 15kDa, the gene for a novel protein, a novel gene, a pseudogene similar to part of ribonucleotide reductase M2 polypeptide (RRM2), a ribosomal protein S2 (RPS2) pseudogene and two CpG islands, complete sequence Length = 162189 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 147130 cccctctgcctggccggccgccccgtcc 147157
>emb|AL162584.9| Human DNA sequence from clone RP11-12A16 on chromosome 9 Contains part of the MAPKAP1 gene for mitogen-activated protein kinase associated protein 1, a novel gene, a heterogeneous nuclear ribonucleoprotein A1 (HNRP1) pseudogene and two CpG islands, complete sequence Length = 160178 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 54117 cccctctgcctggccggccgccccgtcc 54144
>emb|AL136097.10| Human DNA sequence from clone RP11-62C3 on chromosome 9q22.1-22.33 Contains a novel pseudogene, a novel gene, the IARS gene for isoleucine-tRNA synthetase, the gene for a novel protein (FLJ20736), the 5' end of a novel gene, a UPF0183 protein pseudogene, the NOL8 gene for nucleolar protein 8 and three CpG islands, complete sequence Length = 193488 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 ||||||||||| ||| |||||||||||| Sbjct: 62391 cccctccgcctggccagccgccccgtcc 62364
>emb|AL109800.25|HSDA64P14 Human DNA sequence from clone RP6-64P14 on chromosome Xq24-25, complete sequence Length = 163764 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aggatctgagcaacagtgaa 285 |||||||||||||||||||| Sbjct: 143257 aggatctgagcaacagtgaa 143238
>emb|AL021938.1|HS232K4 Human DNA sequence from clone RP1-232K4 on chromosome 6p22.3 Contains the 3'end of the JMJ gene for jumonji protein and 2 CpG islands, complete sequence Length = 198161 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 cccctccgcctcgccggccgccccgtcc 192 ||||||||||| ||| |||||||||||| Sbjct: 106779 cccctccgcctggccagccgccccgtcc 106806
>gb|AC096781.6| Oryza sativa chromosome 10 BAC OSJNBa0013H08 genomic sequence, complete sequence Length = 58293 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cctcgccggccgccccgtcc 192 |||||||||||||||||||| Sbjct: 19294 cctcgccggccgccccgtcc 19313
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cctcgccggccgccccgtcc 192 |||||||||||||||||||| Sbjct: 1859233 cctcgccggccgccccgtcc 1859214
>emb|AL162756.2|NMA5Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 5/7 Length = 329861 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 tgggatatttgctgaaaaga 349 |||||||||||||||||||| Sbjct: 67621 tgggatatttgctgaaaaga 67640
>gb|AE006007.1| Caulobacter crescentus CB15 section 333 of 359 of the complete genome Length = 11047 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gcgccccctccgcctcgccg 180 |||||||||||||||||||| Sbjct: 6143 gcgccccctccgcctcgccg 6162
>gb|AF469044.1| Homo sapiens hepatocellular carcinoma-associated antigen HCA25b mRNA, complete cds Length = 799 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 ||||||||||| ||| |||||||||||| Sbjct: 610 cccctccgcctggccagccgccccgtcc 583
>gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, complete sequence Length = 174158 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 138195 cccctctgcctggccggccgccccgtcc 138222
>gb|AC103792.2| Homo sapiens chromosome 11, clone CTD-2384B9, complete sequence Length = 115626 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 83409 cccctctgcctggccggccgccccgtcc 83382
>gb|AC018371.10| Homo sapiens chromosome 18, clone RP11-552O4, complete sequence Length = 170123 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 aagatgaaggaaatgactgg 326 |||||||||||||||||||| Sbjct: 121056 aagatgaaggaaatgactgg 121075
>gb|DP000034.1| Atelerix albiventris target 116 genomic scaffold Length = 230282 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 ctgaaaagagtgagaatagtgatt 364 ||||||||||| |||||||||||| Sbjct: 223226 ctgaaaagagtcagaatagtgatt 223203
>gb|AF336883.1|AF336883 Homo sapiens FKSG56 (FKSG56) mRNA, complete cds Length = 799 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 ||||||||||| ||| |||||||||||| Sbjct: 610 cccctccgcctggccagccgccccgtcc 583
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cctcgccggccgccccgtcc 192 |||||||||||||||||||| Sbjct: 16372702 cctcgccggccgccccgtcc 16372683
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gcgccggcgccccctccgcctcgccggc 182 |||||||| || |||||||||||||||| Sbjct: 22095441 gcgccggctccgcctccgcctcgccggc 22095468 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 cgccggtgagcgagcacgacgccg 265 |||||| ||||||||||||||||| Sbjct: 10004178 cgccggcgagcgagcacgacgccg 10004155
>gb|AC097455.3| Homo sapiens BAC clone RP11-2J13 from 4, complete sequence Length = 147327 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 46399 cccctctgcctggccggccgccccgtcc 46372
>gb|AC015982.9| Homo sapiens BAC clone RP11-554J4 from 2, complete sequence Length = 191546 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 130930 cccctctgcctggccggccgccccgtcc 130957
>gb|AC078920.17| Homo sapiens 12 BAC RP11-121G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156323 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ctggagtaagtcagatctca 441 |||||||||||||||||||| Sbjct: 48418 ctggagtaagtcagatctca 48399
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 cgccggtgagcgagcacgacgccg 265 |||||| ||||||||||||||||| Sbjct: 84460 cgccggcgagcgagcacgacgccg 84437
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0003H10 Length = 142418 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 cgccggtgagcgagcacgacgccg 265 |||||| ||||||||||||||||| Sbjct: 139944 cgccggcgagcgagcacgacgccg 139921
>gb|AC008526.5|AC008526 Homo sapiens chromosome 5 clone CTC-470C15, complete sequence Length = 168243 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 137655 cccctctgcctggccggccgccccgtcc 137682
>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151A10 Length = 124344 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gcgccggcgccccctccgcctcgccggc 182 |||||||| || |||||||||||||||| Sbjct: 106954 gcgccggctccgcctccgcctcgccggc 106981
>dbj|AK101680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058I20, full insert sequence Length = 1135 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cacacctcgacggccgacct 134 |||||||||||||||||||| Sbjct: 70 cacacctcgacggccgacct 89
>gb|AC154669.2| Mus musculus BAC clone RP24-289P23 from 14, complete sequence Length = 149684 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 aacagaacttctgtgaggat 404 |||||||||||||||||||| Sbjct: 8377 aacagaacttctgtgaggat 8396
>ref|NM_208169.1| Eremothecium gossypii ABL131Cp (ABL131C), mRNA Length = 2598 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ttctgtgaggatgtatcagc 412 |||||||||||||||||||| Sbjct: 1555 ttctgtgaggatgtatcagc 1536
>dbj|AK068724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161E13, full insert sequence Length = 1181 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cacacctcgacggccgacct 134 |||||||||||||||||||| Sbjct: 73 cacacctcgacggccgacct 92
>dbj|AK064952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A01, full insert sequence Length = 2351 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 cgccggtgagcgagcacgacgccg 265 |||||| ||||||||||||||||| Sbjct: 1253 cgccggcgagcgagcacgacgccg 1230
>dbj|AK060532.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A03, full insert sequence Length = 1307 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cacacctcgacggccgacct 134 |||||||||||||||||||| Sbjct: 91 cacacctcgacggccgacct 110
>gb|AY106079.1| Zea mays PCO068745 mRNA sequence Length = 938 Score = 40.1 bits (20), Expect = 6.3 Identities = 50/60 (83%) Strand = Plus / Plus Query: 85 atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 144 |||||||| ||| | || ||| ||||| | |||||||||||||| | ||||||| ||||| Sbjct: 118 atggagagagcggcccccgtgaggagctcccacacctcgacggctggcctgctcgcgtgg 177
>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0021A04 Length = 50487 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 cgccggtgagcgagcacgacgccg 265 |||||| ||||||||||||||||| Sbjct: 31735 cgccggcgagcgagcacgacgccg 31712
>dbj|AP000752.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-689N19, complete sequence Length = 194140 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 ||||||||||| ||| |||||||||||| Sbjct: 100367 cccctccgcctggccagccgccccgtcc 100340
>dbj|AP003967.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-183G19, complete sequence Length = 172883 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 61176 cccctctgcctggccggccgccccgtcc 61149
>gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.269_G_24, complete sequence Length = 163685 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 cccctccgcctcgccggccgccccgtcc 192 |||||| |||| |||||||||||||||| Sbjct: 159978 cccctctgcctggccggccgccccgtcc 160005
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cctcgccggccgccccgtcc 192 |||||||||||||||||||| Sbjct: 16380943 cctcgccggccgccccgtcc 16380924
>gb|AC154690.3| Mus musculus BAC clone RP24-331B7 from chromosome 14, complete sequence Length = 181879 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 aacagaacttctgtgaggat 404 |||||||||||||||||||| Sbjct: 36854 aacagaacttctgtgaggat 36835
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ttctgtgaggatgtatcagc 412 |||||||||||||||||||| Sbjct: 150201 ttctgtgaggatgtatcagc 150220
>emb|AL772366.7| Mouse DNA sequence from clone RP23-171C7 on chromosome 2, complete sequence Length = 167389 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aaggaaatgactgggagtgg 332 |||||||||||||||||||| Sbjct: 91201 aaggaaatgactgggagtgg 91182
>emb|AL772190.6| Mouse DNA sequence from clone RP23-124P7 on chromosome 2, complete sequence Length = 206240 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 agatggaagcgtttctccaa 469 |||||||||||||||||||| Sbjct: 172123 agatggaagcgtttctccaa 172104
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 cgccggtgagcgagcacgacgccg 265 |||||| ||||||||||||||||| Sbjct: 98671 cgccggcgagcgagcacgacgccg 98648 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,287,069 Number of Sequences: 3902068 Number of extensions: 3287069 Number of successful extensions: 76917 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75403 Number of HSP's gapped (non-prelim): 1514 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)