ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469569.1| Oryza sativa (japonica cultivar-group), mRNA 101 9e-19
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 9e-19
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 9e-19
4gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 101 9e-19
5dbj|AK100267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 9e-19
6dbj|AK058421.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 9e-19
7dbj|AB047313.1| Oryza sativa (japonica cultivar-group) OsRAc1 mR... 101 9e-19
8gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 96 6e-17
9emb|X79378.1|SVSOAC1 S.vulgare SoAc1 mRNA 66 5e-08
10emb|X16280.1|OSRAC1 Oryza sativa RAc1 mRNA for actin 62 8e-07
11gb|AC108852.9| Mus musculus chromosome 3, clone RP24-87H3, compl... 46 0.047
12emb|AL357552.25| Human DNA sequence from clone RP4-633I8 on chro... 42 0.73
13gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, com... 42 0.73
14dbj|AK022404.1| Homo sapiens cDNA FLJ12342 fis, clone MAMMA1002282 42 0.73
15gb|AC016134.7| Homo sapiens chromosome 15 clone RP11-380D11 map ... 42 0.73
16gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complet... 42 0.73
17gb|AY223820.1| Homo sapiens nuclear factor of kappa light polype... 42 0.73
18gb|AF213884.1|AF213884S1 Homo sapiens nuclear factor of kappa li... 42 0.73
19gb|AC005792.1|AC005792 Homo sapiens chromosome 19, BAC CIT-B-978... 42 0.73
20emb|BX005402.7| Zebrafish DNA sequence from clone DKEY-237J11, c... 42 0.73
21gb|AC139574.4| Mus musculus BAC clone RP23-477I8 from chromosome... 40 2.9
22gb|AC166333.9| Mus musculus chromosome 1, clone RP23-395A13, com... 40 2.9
23gb|AC149234.1| Pan troglodytes chromosome X clone PTB-085L05 map... 40 2.9
24gb|AC149233.1| Pan troglodytes chromosome X clone RP43-034P07 ma... 40 2.9
25ref|XM_721449.1| Plasmodium yoelii yoelii str. 17XNL pKU-alpha p... 40 2.9
26ref|XM_737111.1| Plasmodium chabaudi chabaudi protein kinase (PC... 40 2.9
27gb|AC113085.6| Mus musculus chromosome 8, clone RP23-292P21, com... 40 2.9
28ref|XM_675300.1| Plasmodium berghei strain ANKA hypothetical pro... 40 2.9
29gb|AC163007.4| Mus musculus chromosome 1, clone RP23-421G18, com... 40 2.9
30emb|Z94056.1|HS436M11 Human DNA sequence from clone RP3-436M11 o... 40 2.9
31emb|AL512599.33| Human DNA sequence from clone RP11-115D7 on chr... 40 2.9
32emb|CR790377.18| Zebrafish DNA sequence from clone CH211-260M3 i... 40 2.9
33emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in... 40 2.9
34emb|BX569800.8| Zebrafish DNA sequence from clone DKEY-106C24 in... 40 2.9
35gb|AC093165.5| Homo sapiens BAC clone RP11-1255P17 from 2, compl... 40 2.9
36gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, co... 40 2.9
37emb|AL079306.3|CNS00M8P Human chromosome 14 DNA sequence BAC R-2... 40 2.9
38emb|BX571696.7| Zebrafish DNA sequence from clone CH211-140B10 i... 40 2.9
39gb|AC002368.1|AC002368 Homo sapiens Xq28 BAC PAC and cosmid clon... 40 2.9 
>ref|XM_469569.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1540

 Score =  101 bits (51), Expect = 9e-19
 Identities = 97/112 (86%), Gaps = 4/112 (3%)
 Strand = Plus / Plus

                                                                        
Query: 20   ttttctcctgttcaaagactgtaatatctattgctacttgtgcttgtccctcgtgatttt 79
            |||||| || |||||||||||||||| |||||||||| |||| || || || ||||||||
Sbjct: 1353 ttttcttctattcaaagactgtaatacctattgctacctgtggttctcacttgtgatttt 1412

                                                                
Query: 80   ggacacatgagttcggtttattcaatcaaatttaatcagatgcctggtgagg 131
            ||||||||  |||||||||||    ||||||||||||||||||||| |||||
Sbjct: 1413 ggacacatatgttcggtttat----tcaaatttaatcagatgcctgatgagg 1460
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 9e-19
 Identities = 97/112 (86%), Gaps = 4/112 (3%)
 Strand = Plus / Plus

                                                                            
Query: 20       ttttctcctgttcaaagactgtaatatctattgctacttgtgcttgtccctcgtgatttt 79
                |||||| || |||||||||||||||| |||||||||| |||| || || || ||||||||
Sbjct: 28782149 ttttcttctattcaaagactgtaatacctattgctacctgtggttctcacttgtgatttt 28782208

                                                                    
Query: 80       ggacacatgagttcggtttattcaatcaaatttaatcagatgcctggtgagg 131
                ||||||||  |||||||||||    ||||||||||||||||||||| |||||
Sbjct: 28782209 ggacacatatgttcggtttat----tcaaatttaatcagatgcctgatgagg 28782256
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 9e-19
 Identities = 97/112 (86%), Gaps = 4/112 (3%)
 Strand = Plus / Plus

                                                                            
Query: 20       ttttctcctgttcaaagactgtaatatctattgctacttgtgcttgtccctcgtgatttt 79
                |||||| || |||||||||||||||| |||||||||| |||| || || || ||||||||
Sbjct: 28873473 ttttcttctattcaaagactgtaatacctattgctacctgtggttctcacttgtgatttt 28873532

                                                                    
Query: 80       ggacacatgagttcggtttattcaatcaaatttaatcagatgcctggtgagg 131
                ||||||||  |||||||||||    ||||||||||||||||||||| |||||
Sbjct: 28873533 ggacacatatgttcggtttat----tcaaatttaatcagatgcctgatgagg 28873580
to top
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score =  101 bits (51), Expect = 9e-19
 Identities = 97/112 (86%), Gaps = 4/112 (3%)
 Strand = Plus / Plus

                                                                         
Query: 20    ttttctcctgttcaaagactgtaatatctattgctacttgtgcttgtccctcgtgatttt 79
             |||||| || |||||||||||||||| |||||||||| |||| || || || ||||||||
Sbjct: 89130 ttttcttctattcaaagactgtaatacctattgctacctgtggttctcacttgtgatttt 89189

                                                                 
Query: 80    ggacacatgagttcggtttattcaatcaaatttaatcagatgcctggtgagg 131
             ||||||||  |||||||||||    ||||||||||||||||||||| |||||
Sbjct: 89190 ggacacatatgttcggtttat----tcaaatttaatcagatgcctgatgagg 89237
to top
>dbj|AK100267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065A19, full
            insert sequence
          Length = 1546

 Score =  101 bits (51), Expect = 9e-19
 Identities = 97/112 (86%), Gaps = 4/112 (3%)
 Strand = Plus / Plus

                                                                        
Query: 20   ttttctcctgttcaaagactgtaatatctattgctacttgtgcttgtccctcgtgatttt 79
            |||||| || |||||||||||||||| |||||||||| |||| || || || ||||||||
Sbjct: 1367 ttttcttctattcaaagactgtaatacctattgctacctgtggttctcacttgtgatttt 1426

                                                                
Query: 80   ggacacatgagttcggtttattcaatcaaatttaatcagatgcctggtgagg 131
            ||||||||  |||||||||||    ||||||||||||||||||||| |||||
Sbjct: 1427 ggacacatatgttcggtttat----tcaaatttaatcagatgcctgatgagg 1474
to top
>dbj|AK058421.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D09, full
            insert sequence
          Length = 1508

 Score =  101 bits (51), Expect = 9e-19
 Identities = 97/112 (86%), Gaps = 4/112 (3%)
 Strand = Plus / Plus

                                                                        
Query: 20   ttttctcctgttcaaagactgtaatatctattgctacttgtgcttgtccctcgtgatttt 79
            |||||| || |||||||||||||||| |||||||||| |||| || || || ||||||||
Sbjct: 1361 ttttcttctattcaaagactgtaatacctattgctacctgtggttctcacttgtgatttt 1420

                                                                
Query: 80   ggacacatgagttcggtttattcaatcaaatttaatcagatgcctggtgagg 131
            ||||||||  |||||||||||    ||||||||||||||||||||| |||||
Sbjct: 1421 ggacacatatgttcggtttat----tcaaatttaatcagatgcctgatgagg 1468
to top
>dbj|AB047313.1| Oryza sativa (japonica cultivar-group) OsRAc1 mRNA for actin,
            complete cds
          Length = 1556

 Score =  101 bits (51), Expect = 9e-19
 Identities = 97/112 (86%), Gaps = 4/112 (3%)
 Strand = Plus / Plus

                                                                        
Query: 20   ttttctcctgttcaaagactgtaatatctattgctacttgtgcttgtccctcgtgatttt 79
            |||||| || |||||||||||||||| |||||||||| |||| || || || ||||||||
Sbjct: 1353 ttttcttctattcaaagactgtaatacctattgctacctgtggttctcacttgtgatttt 1412

                                                                
Query: 80   ggacacatgagttcggtttattcaatcaaatttaatcagatgcctggtgagg 131
            ||||||||  |||||||||||    ||||||||||||||||||||| |||||
Sbjct: 1413 ggacacatatgttcggtttat----tcaaatttaatcagatgcctgatgagg 1460
to top
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 91/105 (86%), Gaps = 4/105 (3%)
 Strand = Plus / Plus

                                                                         
Query: 34    aagactgtaatatctattgctacttgtgcttgtccctcgtgattttggacacatgagttc 93
             ||||||||||||||||||||||| | ||||| || || ||||||||||||||||  ||||
Sbjct: 13180 aagactgtaatatctattgctacctatgcttctcacttgtgattttggacacatatgttc 13239

                                                          
Query: 94    ggtttattcaatcaaatttaatcagatgcctggtgaggctactag 138
             ||| ||||||||    |||||| ||||||||| ||||||||||||
Sbjct: 13240 ggtctattcaat----tttaatgagatgcctgatgaggctactag 13280
to top
>emb|X79378.1|SVSOAC1 S.vulgare SoAc1 mRNA
          Length = 1445

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 63/72 (87%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                        
Query: 34   aagactgtaatatctattgctacttgtgcttgtccctcgtgattttggacacatgagttc 93
            ||||||||||||||||||||||| | ||||| || ||  |||||||||||||||  ||||
Sbjct: 1327 aagactgtaatatctattgctacctatgcttctcact--tgattttggacacatatgttc 1384

                        
Query: 94   ggtttattcaat 105
            ||| ||||||||
Sbjct: 1385 ggtctattcaat 1396
to top
>emb|X16280.1|OSRAC1 Oryza sativa RAc1 mRNA for actin
          Length = 1460

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                        
Query: 20   ttttctcctgttcaaagactgtaatatctattgctacttgtgcttgtccctcgtgatttt 79
            |||||| || |||||||||||||||| |||||||||| |||| || || || ||||||||
Sbjct: 1347 ttttcttctattcaaagactgtaatacctattgctacctgtggttctcacttgtgatttt 1406

               
Query: 80   gga 82
            |||
Sbjct: 1407 gga 1409
to top
>gb|AC108852.9| Mus musculus chromosome 3, clone RP24-87H3, complete sequence
          Length = 220174

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 197    tgaatgaataatatgaattgtct 219
              |||||||||||||||||||||||
Sbjct: 131969 tgaatgaataatatgaattgtct 131947
to top
>emb|AL357552.25| Human DNA sequence from clone RP4-633I8 on chromosome 1p36.21-36.32
              Contains the 5' end of the RERE gene for arginine-glutamic
              acid dipeptide (RE) repeats (FLJ38775), two ribosomal
              protein L7 (RPL7) pseudogenes, a ribosomal protein L27
              (RPL27) pseudogene, a novel gene and a CpG island, complete
              sequence
          Length = 143969

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 190    tgttaaatgaatgaataatat 210
              |||||||||||||||||||||
Sbjct: 120426 tgttaaatgaatgaataatat 120406
to top
>gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, complete sequence
          Length = 155221

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  ggctggtgtttttgatttcat 167
            |||||||||||||||||||||
Sbjct: 5796 ggctggtgtttttgatttcat 5816
to top
>dbj|AK022404.1| Homo sapiens cDNA FLJ12342 fis, clone MAMMA1002282
          Length = 2443

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 190  tgttaaatgaatgaataatat 210
            |||||||||||||||||||||
Sbjct: 1674 tgttaaatgaatgaataatat 1694
to top
>gb|AC016134.7| Homo sapiens chromosome 15 clone RP11-380D11 map 15q14, complete
             sequence
          Length = 170695

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   cctgttaaatgaatgaataat 208
             |||||||||||||||||||||
Sbjct: 53914 cctgttaaatgaatgaataat 53894
to top
>gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complete sequence
          Length = 193980

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 189    ctgttaaatgaatgaataatatgaa 213
              ||||||||||||||||| |||||||
Sbjct: 154292 ctgttaaatgaatgaatgatatgaa 154268
to top
>gb|AY223820.1| Homo sapiens nuclear factor of kappa light polypeptide gene enhancer
            in B-cells 1 (p105) (NFKB1) gene, complete cds
          Length = 117359

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 189  ctgttaaatgaatgaataatatgaa 213
            ||||||||||||||||| |||||||
Sbjct: 5637 ctgttaaatgaatgaatgatatgaa 5661
to top
>gb|AF213884.1|AF213884S1 Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in
             B-cells 1 (NFKB1) gene, complete cds
          Length = 190000

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 189   ctgttaaatgaatgaataatatgaa 213
             ||||||||||||||||| |||||||
Sbjct: 70585 ctgttaaatgaatgaatgatatgaa 70609
to top
>gb|AC005792.1|AC005792 Homo sapiens chromosome 19, BAC CIT-B-978SK-259j21, complete sequence
          Length = 81357

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   ggctggtgtttttgatttcat 167
             |||||||||||||||||||||
Sbjct: 77740 ggctggtgtttttgatttcat 77760
to top
>emb|BX005402.7| Zebrafish DNA sequence from clone DKEY-237J11, complete sequence
          Length = 148726

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 194   aaatgaatgaataatatgaattgtc 218
             |||||||||||||| ||||||||||
Sbjct: 87877 aaatgaatgaataaaatgaattgtc 87853
to top
>gb|AC139574.4| Mus musculus BAC clone RP23-477I8 from chromosome 15, complete
            sequence
          Length = 190948

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  atcagatgcctggtgaggct 133
            ||||||||||||||||||||
Sbjct: 8377 atcagatgcctggtgaggct 8396
to top
>gb|AC166333.9| Mus musculus chromosome 1, clone RP23-395A13, complete sequence
          Length = 188044

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 175    gtgtcatcactaccctgttaaatg 198
              |||||||||| |||||||||||||
Sbjct: 164941 gtgtcatcaccaccctgttaaatg 164918
to top
>gb|AC149234.1| Pan troglodytes chromosome X clone PTB-085L05 map human ortholog q28,
             complete sequence
          Length = 186825

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    tgttcaaagactgtaatatctatt 51
             ||||||||||||||||||| ||||
Sbjct: 23638 tgttcaaagactgtaatatttatt 23615
to top
>gb|AC149233.1| Pan troglodytes chromosome X clone RP43-034P07 map human ortholog q28,
              complete sequence
          Length = 169963

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     tgttcaaagactgtaatatctatt 51
              ||||||||||||||||||| ||||
Sbjct: 130869 tgttcaaagactgtaatatttatt 130846
to top
>ref|XM_721449.1| Plasmodium yoelii yoelii str. 17XNL pKU-alpha protein kinase
            (PY05975) partial mRNA
          Length = 2300

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  tttttgatttcatttgtcat 174
            ||||||||||||||||||||
Sbjct: 1597 tttttgatttcatttgtcat 1578
to top
>ref|XM_737111.1| Plasmodium chabaudi chabaudi protein kinase (PC000272.02.0) partial
           mRNA
          Length = 1530

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 tttttgatttcatttgtcat 174
           ||||||||||||||||||||
Sbjct: 827 tttttgatttcatttgtcat 808
to top
>gb|AC113085.6| Mus musculus chromosome 8, clone RP23-292P21, complete sequence
          Length = 211723

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    accctgttaaatgaatgaat 205
              ||||||||||||||||||||
Sbjct: 112631 accctgttaaatgaatgaat 112650
to top
>ref|XM_675300.1| Plasmodium berghei strain ANKA hypothetical protein (PB000797.02.0)
            partial mRNA
          Length = 3897

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  tttttgatttcatttgtcat 174
            ||||||||||||||||||||
Sbjct: 3194 tttttgatttcatttgtcat 3175
to top
>gb|AC163007.4| Mus musculus chromosome 1, clone RP23-421G18, complete sequence
          Length = 195727

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 175    gtgtcatcactaccctgttaaatg 198
              |||||||||| |||||||||||||
Sbjct: 166745 gtgtcatcaccaccctgttaaatg 166768
to top
>emb|Z94056.1|HS436M11 Human DNA sequence from clone RP3-436M11 on chromosome Xp22.11-22.2,
              complete sequence
          Length = 134403

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    cctgttaaatgaatgaataa 207
              ||||||||||||||||||||
Sbjct: 132571 cctgttaaatgaatgaataa 132552
to top
>emb|AL512599.33| Human DNA sequence from clone RP11-115D7 on chromosome 1 Contains the
             CAP1 gene for CAP, adenylate cyclase-associated protein 1
             (yeast), the PPT1 gene for palmitoyl-protein thioesterase
             1 (ceroid-lipofuscinosis, neuronal 1, infantile), an
             ornithine decarboxylase antizyme 1 (OAZ1) pseudogene, the
             5' end of the RLF gene for rearranged L-myc fusion
             sequence and a CpG island, complete sequence
          Length = 157750

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tgttaaatgaatgaataata 209
             ||||||||||||||||||||
Sbjct: 53557 tgttaaatgaatgaataata 53576
to top
>emb|CR790377.18| Zebrafish DNA sequence from clone CH211-260M3 in linkage group 3,
             complete sequence
          Length = 147590

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tgttcaaagactgtaatatc 47
             ||||||||||||||||||||
Sbjct: 70016 tgttcaaagactgtaatatc 70035
to top
>emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in linkage group 24,
             complete sequence
          Length = 167553

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   aaatgaatgaataatatgaa 213
             ||||||||||||||||||||
Sbjct: 70731 aaatgaatgaataatatgaa 70750
to top
>emb|BX569800.8| Zebrafish DNA sequence from clone DKEY-106C24 in linkage group 21,
              complete sequence
          Length = 188915

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    aatgaatgaataatatgaat 214
              ||||||||||||||||||||
Sbjct: 121947 aatgaatgaataatatgaat 121928
to top
>gb|AC093165.5| Homo sapiens BAC clone RP11-1255P17 from 2, complete sequence
          Length = 163772

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    cctgttaaatgaatgaataa 207
              ||||||||||||||||||||
Sbjct: 128457 cctgttaaatgaatgaataa 128476
to top
>gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, complete sequence
          Length = 186051

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   atcagatgcctggtgaggct 133
             ||||||||||||||||||||
Sbjct: 25025 atcagatgcctggtgaggct 25006
to top
>emb|AL079306.3|CNS00M8P Human chromosome 14 DNA sequence BAC R-216F9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184249

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     attcaatcaaatttaatcag 118
              ||||||||||||||||||||
Sbjct: 103998 attcaatcaaatttaatcag 103979
to top
>emb|BX571696.7| Zebrafish DNA sequence from clone CH211-140B10 in linkage group 24,
             complete sequence
          Length = 171175

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   aaatgaatgaataatatgaa 213
             ||||||||||||||||||||
Sbjct: 52494 aaatgaatgaataatatgaa 52475
to top
>gb|AC002368.1|AC002368 Homo sapiens Xq28 BAC PAC and cosmid clones containing FMR2 gene exons
             1,2, and 3, complete sequence
          Length = 324816

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    tgttcaaagactgtaatatctatt 51
             ||||||||||||||||||| ||||
Sbjct: 89709 tgttcaaagactgtaatatttatt 89686


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,645,693
Number of Sequences: 3902068
Number of extensions: 2645693
Number of successful extensions: 233593
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 233342
Number of HSP's gapped (non-prelim): 242
length of query: 225
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 203
effective length of database: 17,147,199,772
effective search space: 3480881553716
effective search space used: 3480881553716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top