ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast75a08 |
|---|---|
| Clone Library Name | barley_pub |
>RL22B_ARATH (Q9M9W1) 60S ribosomal protein L22-2| Length = 124 Score = 144 bits (364), Expect = 9e-35 Identities = 73/101 (72%), Positives = 82/101 (81%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 315 VSF IDC+KPV+DKIMEIASLEKFLQERIKV GGKAG LGDSVT+TR+KSK+TVT+DG F Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVTITREKSKITVTADGQF 74 Query: 316 SXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 S HNVRDWLRVIAANK+RN+YELRYF + Sbjct: 75 SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI 115
>RL22C_ARATH (Q9FE58) 60S ribosomal protein L22-3| Length = 124 Score = 143 bits (360), Expect = 3e-34 Identities = 72/101 (71%), Positives = 82/101 (81%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 315 VSF IDC+KPV+DKIMEIASLEKFLQERIKV GGKAG LGDSV++TR+KSK+TVT+DG F Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVSITREKSKITVTADGQF 74 Query: 316 SXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 S HNVRDWLRVIAANK+RN+YELRYF + Sbjct: 75 SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI 115
>RL22A_ARATH (Q9SRX7) 60S ribosomal protein L22-1| Length = 127 Score = 115 bits (288), Expect = 6e-26 Identities = 58/101 (57%), Positives = 75/101 (74%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 315 VSFVIDC+KPV+D I+EIA+LEKFLQERIKV G KAG LG+SV++TR K+ V ++ F Sbjct: 18 VSFVIDCSKPVDDTILEIATLEKFLQERIKVRG-KAGALGNSVSITRYNGKINVNANSNF 76 Query: 316 SXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 S +N+RDWLRVIA+NK++NVYE+RYF + Sbjct: 77 SKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRI 117
>RL22_TRIGR (P13732) 60S ribosomal protein L22 (Development-specific protein| 217) Length = 130 Score = 99.4 bits (246), Expect = 4e-21 Identities = 54/102 (52%), Positives = 68/102 (66%) Frame = +1 Query: 133 SVSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGA 312 ++ F IDCT PVED IM+ ++ E+FLQERIKV GK NL ++ + R KSKVTVTS+ A Sbjct: 22 TLKFTIDCTLPVEDGIMDASNFEQFLQERIKV-NGKTKNLTTNIVIERKKSKVTVTSEIA 80 Query: 313 FSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 FS +N+RDWLRV+AANKE YELRYF + Sbjct: 81 FSKRYLKYLTKKYLKKNNLRDWLRVVAANKES--YELRYFQI 120
>RL22_RAT (P47198) 60S ribosomal protein L22| Length = 127 Score = 99.4 bits (246), Expect = 4e-21 Identities = 55/102 (53%), Positives = 68/102 (66%), Gaps = 1/102 (0%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 312 + F +DCT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEEP 76 Query: 313 FSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 FS +N+RDWLRV+A +KE YELRYF + Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQI 116
>RL22_PIG (P67985) 60S ribosomal protein L22 (Heparin-binding protein HBp15)| Length = 127 Score = 99.0 bits (245), Expect = 5e-21 Identities = 55/102 (53%), Positives = 68/102 (66%), Gaps = 1/102 (0%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 312 + F +DCT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76 Query: 313 FSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 FS +N+RDWLRV+A +KE YELRYF + Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQI 116
>RL22_MOUSE (P67984) 60S ribosomal protein L22 (Heparin-binding protein HBp15)| Length = 127 Score = 99.0 bits (245), Expect = 5e-21 Identities = 55/102 (53%), Positives = 68/102 (66%), Gaps = 1/102 (0%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 312 + F +DCT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76 Query: 313 FSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 FS +N+RDWLRV+A +KE YELRYF + Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQI 116
>RL22_HUMAN (P35268) 60S ribosomal protein L22 (Epstein-Barr virus small| RNA-associated protein) (EBER-associated protein) (EAP) (Heparin-binding protein HBp15) Length = 127 Score = 99.0 bits (245), Expect = 5e-21 Identities = 55/102 (53%), Positives = 68/102 (66%), Gaps = 1/102 (0%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 312 + F +DCT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76 Query: 313 FSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 FS +N+RDWLRV+A +KE YELRYF + Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQI 116
>RL22_XENLA (P50886) 60S ribosomal protein L22| Length = 127 Score = 91.3 bits (225), Expect = 1e-18 Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 1/102 (0%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 312 + F +DCT PVED IM+ A+ E+FL +RIKV GK GNLG V ++ R KSK+TV+S+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLHDRIKV-NGKVGNLGGGVVSIERSKSKITVSSEVP 76 Query: 313 FSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 FS +N+RDWLRV+A +KE YELRYF + Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQI 116
>RL22_GADMO (P52865) 60S ribosomal protein L22 (Fragment)| Length = 124 Score = 90.5 bits (223), Expect = 2e-18 Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 1/102 (0%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 312 + F +DCT PVED IM+ A+ E+FLQERIKV GK+GNLG+ V ++ R SK++V S+ Sbjct: 15 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKSGNLGNGVVSIERXXSKISVNSEVP 73 Query: 313 FSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 FS +N+RDWLRV+A KE YELRYF + Sbjct: 74 FSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQI 113
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 84.3 bits (207), Expect = 1e-16 Identities = 44/102 (43%), Positives = 63/102 (61%) Frame = +1 Query: 133 SVSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGA 312 S+ F IDCT ED IM++A EK+++ R+KV GK NLG++VT R K K+ V+SD Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKV-NGKVNNLGNNVTFERSKLKLIVSSDVH 248 Query: 313 FSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 FS +++RDW+RV+A E++ YELRYF + Sbjct: 249 FSKAYLKYLTKKYLKKNSLRDWIRVVA--NEKDSYELRYFRI 288
>RL22_SCHPO (Q09668) 60S ribosomal protein L22| Length = 117 Score = 79.3 bits (194), Expect = 4e-15 Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Frame = +1 Query: 133 SVSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRD-KSKVTVTSDG 309 S ++ID T V DKI ++A+ EK+L +RIKV GK GNLG SV V+R+ SK+ V + Sbjct: 9 SNKYIIDATAAVNDKIFDVAAFEKYLIDRIKV-DGKTGNLGSSVVVSREGSSKIAVIAHI 67 Query: 310 AFSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYFTL 438 FS H++RDWLRV++ K VYELRY+ + Sbjct: 68 DFSGRYLKYLTKKFLKKHSLRDWLRVVSTKK--GVYELRYYNV 108
>RL22_CAEEL (P52819) 60S ribosomal protein L22| Length = 130 Score = 76.6 bits (187), Expect = 3e-14 Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 1/100 (1%) Frame = +1 Query: 136 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLG-DSVTVTRDKSKVTVTSDGA 312 + F ++C PVED I+ I LE FL E+IKV GK G+L ++V V KSKV+V S+ Sbjct: 21 LKFNVECKNPVEDGILRIEDLEAFLNEKIKV-NGKTGHLAANNVKVEVAKSKVSVVSEVP 79 Query: 313 FSXXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYF 432 FS +++RDWLRV+A NK N YE+RYF Sbjct: 80 FSKRYLKYLTKKYLKRNSLRDWLRVVAVNK--NTYEVRYF 117
>RL22A_YEAST (P05749) 60S ribosomal protein L22-A (YL31) (RP4)| Length = 120 Score = 62.4 bits (150), Expect = 6e-10 Identities = 34/98 (34%), Positives = 53/98 (54%) Frame = +1 Query: 139 SFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFS 318 +F +D + P E+ + + AS K+L + IKV G GNLG++VTVT D + VTV S FS Sbjct: 13 TFTVDVSSPTENGVFDPASYAKYLIDHIKVEGA-VGNLGNAVTVTEDGTVVTVVSTAKFS 71 Query: 319 XXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYF 432 + +RDW+R ++ + N Y L ++ Sbjct: 72 GKYLKYLTKKYLKKNQLRDWIRFVST--KTNEYRLAFY 107
>RL22B_YEAST (P56628) 60S ribosomal protein L22-B| Length = 121 Score = 58.2 bits (139), Expect = 1e-08 Identities = 32/98 (32%), Positives = 52/98 (53%) Frame = +1 Query: 139 SFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFS 318 + +D + P E+ + + AS K+L + IKV G GNLG+++ VT D S VTV S FS Sbjct: 13 TLTVDVSSPTENGVFDPASYSKYLIDHIKVDGA-VGNLGNAIEVTEDGSIVTVVSSAKFS 71 Query: 319 XXXXXXXXXXXXXXHNVRDWLRVIAANKERNVYELRYF 432 + +RDW+R ++ +N Y+L ++ Sbjct: 72 GKYLKYLTKKYLKKNQLRDWIRFVSI--RQNQYKLVFY 107
>VATE_METKA (Q8TWL9) V-type ATP synthase subunit E (EC 3.6.3.14) (V-type ATPase| subunit E) Length = 200 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 4/45 (8%) Frame = +3 Query: 342 QEVLEEAQRAGLASCDRSQQGAQRVRAPVL----HIAETRARRKI 464 +E+LEEA+R +++++ A+ VR +L AETR RR+I Sbjct: 19 EEILEEAKRDAERIREKAEREAEEVRREILDRARREAETRRRREI 63
>SAPC_SHIFL (P0AGH7) Peptide transport system permease protein sapC| Length = 296 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 236 PPATLMRSWRNFSSDAISMI 177 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDASAMV 31
>SAPC_ECOLI (P0AGH5) Peptide transport system permease protein sapC| Length = 296 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 236 PPATLMRSWRNFSSDAISMI 177 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDASAMV 31
>SAPC_ECOL6 (P0AGH6) Peptide transport system permease protein sapC| Length = 296 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 236 PPATLMRSWRNFSSDAISMI 177 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDASAMV 31
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1745 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 139 SFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKA 243 +F ID TKP + I ++ + LQER+ V GK+ Sbjct: 970 TFRIDSTKPTDLSIQDVVQGVRGLQERLLVLRGKS 1004
>SAPC_SALTY (P0A2J5) Peptide transport system permease protein sapC| Length = 296 Score = 28.5 bits (62), Expect = 9.1 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 236 PPATLMRSWRNFSSDAISMI 177 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDAPAMV 31
>SAPC_SALTI (P0A2J6) Peptide transport system permease protein sapC| Length = 296 Score = 28.5 bits (62), Expect = 9.1 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 236 PPATLMRSWRNFSSDAISMI 177 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDAPAMV 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,465,403 Number of Sequences: 219361 Number of extensions: 494749 Number of successful extensions: 2150 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2083 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2141 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
