ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COG2_CAEEL (Q21444) Conserved oligomeric Golgi complex component... 30 3.5
2MP44_MCV1 (Q98224) Probable metalloendopeptidase G1-type (EC 3.4... 30 3.5
3YAR2_SCHPO (Q10135) DNA-binding protein C23E2.02 in chromosome I 30 4.5

>COG2_CAEEL (Q21444) Conserved oligomeric Golgi complex component 2 (LDLC|
           protein homolog)
          Length = 681

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 62  LDCILCVKGLRSSCGQCYYLALPVTTTSSTQLQDHMSCTIV 184
           L+ +LC +G+RS+ G C  L L  +  S T+    ++  +V
Sbjct: 200 LEAVLCAEGVRSAAGDCQNLPLIYSILSLTESTHSLTALLV 240



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>MP44_MCV1 (Q98224) Probable metalloendopeptidase G1-type (EC 3.4.24.-)|
          Length = 593

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 302 EPAPSKVVNYSREFVLNLFVAHP 370
           EPAP   +NYS ++V+NL+V  P
Sbjct: 276 EPAPRVELNYSDDYVMNLYVNFP 298



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>YAR2_SCHPO (Q10135) DNA-binding protein C23E2.02 in chromosome I|
          Length = 1273

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 71  ILCVKGLRSSCGQCYYLALPVTTTSSTQLQDHMSCTIVLESN 196
           ++ ++    + G+ Y  ALPV+ TS+TQ+  H S +  + SN
Sbjct: 546 VIILEAKERTGGRIYSRALPVSHTSATQINHHTSNSNSISSN 587


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,102,848
Number of Sequences: 219361
Number of extensions: 1072924
Number of successful extensions: 2157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2157
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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