ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
2dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
3gb|AC017083.7| Homo sapiens BAC clone RP11-474G23 from 2, comple... 42 1.7
4gb|AC125114.3| Mus musculus BAC clone RP24-254M13 from chromosom... 40 6.6
5gb|AC125162.4| Mus musculus BAC clone RP24-421D9 from chromosome... 40 6.6
6ref|XM_666350.1| Plasmodium berghei strain ANKA hypothetical pro... 40 6.6
7gb|AC110236.8| Mus musculus chromosome 15, clone RP23-104L4, com... 40 6.6
8emb|AL683886.8| Human DNA sequence from clone RP11-289O2 on chro... 40 6.6
9gb|AF228661.4| Homo sapiens chromosome 8 clone CTD-3015B2 map q1... 40 6.6
10gb|AC104939.7| Homo sapiens chromosome 8, clone CTD-3015B2, comp... 40 6.6
11gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Can... 40 6.6
12gb|AF215845.3| Homo sapiens chromosome 8 clone CTD-2542N7 map q1... 40 6.6
13gb|AY740531.1| Capsicum annuum WRKY transcription factor-c (WRKY... 40 6.6
14emb|AL954684.9| Mouse DNA sequence from clone RP24-352O9 on chro... 40 6.6
15emb|AL691474.29| Mouse DNA sequence from clone RP23-406D5 on chr... 40 6.6

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                      
Query: 32       gttcttgagctgatcactaatcattagctacttgattg 69
                ||||||||||| ||||||||||||||||||||||||||
Sbjct: 22203744 gttcttgagctcatcactaatcattagctacttgattg 22203707



to top

>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0567H04
          Length = 181420

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 32   gttcttgagctgatcactaatcattagctacttgattg 69
            ||||||||||| ||||||||||||||||||||||||||
Sbjct: 8990 gttcttgagctcatcactaatcattagctacttgattg 8953



to top

>gb|AC017083.7| Homo sapiens BAC clone RP11-474G23 from 2, complete sequence
          Length = 198278

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 409   cccctgtacttgtggtcttgt 429
             |||||||||||||||||||||
Sbjct: 15196 cccctgtacttgtggtcttgt 15176



to top

>gb|AC125114.3| Mus musculus BAC clone RP24-254M13 from chromosome 18, complete
             sequence
          Length = 158836

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   acagcaatgcccgatttctt 232
             ||||||||||||||||||||
Sbjct: 34320 acagcaatgcccgatttctt 34339



to top

>gb|AC125162.4| Mus musculus BAC clone RP24-421D9 from chromosome 8, complete sequence
          Length = 206643

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   aaggcacacacccctgtact 418
             ||||||||||||||||||||
Sbjct: 45414 aaggcacacacccctgtact 45433



to top

>ref|XM_666350.1| Plasmodium berghei strain ANKA hypothetical protein (PB000202.03.0)
           partial mRNA
          Length = 948

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 gaaagttgttaattattcaa 335
           ||||||||||||||||||||
Sbjct: 903 gaaagttgttaattattcaa 922



to top

>gb|AC110236.8| Mus musculus chromosome 15, clone RP23-104L4, complete sequence
          Length = 233499

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   aagacagcaatgcccgattt 229
             ||||||||||||||||||||
Sbjct: 48634 aagacagcaatgcccgattt 48653



to top

>emb|AL683886.8| Human DNA sequence from clone RP11-289O2 on chromosome 1, complete
             sequence
          Length = 145108

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    cattagctacttgattgtat 72
             ||||||||||||||||||||
Sbjct: 76120 cattagctacttgattgtat 76139



to top

>gb|AF228661.4| Homo sapiens chromosome 8 clone CTD-3015B2 map q11-q13, complete
             sequence
          Length = 140374

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   aattacaggaccatatgtct 172
             ||||||||||||||||||||
Sbjct: 67904 aattacaggaccatatgtct 67885



to top

>gb|AC104939.7| Homo sapiens chromosome 8, clone CTD-3015B2, complete sequence
          Length = 140375

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   aattacaggaccatatgtct 172
             ||||||||||||||||||||
Sbjct: 67678 aattacaggaccatatgtct 67659



to top

>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 189286

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 250   catagcaatgatgaattgaatcat 273
             ||||||||||||| ||||||||||
Sbjct: 48926 catagcaatgatggattgaatcat 48903



to top

>gb|AF215845.3| Homo sapiens chromosome 8 clone CTD-2542N7 map q11-q13, complete sequence
          Length = 237705

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    aattacaggaccatatgtct 172
              ||||||||||||||||||||
Sbjct: 204731 aattacaggaccatatgtct 204712



to top

>gb|AY740531.1| Capsicum annuum WRKY transcription factor-c (WRKY-c) mRNA, complete
            cds
          Length = 1493

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 73   cttgtgtgtgaaaggattgc 92
            ||||||||||||||||||||
Sbjct: 1253 cttgtgtgtgaaaggattgc 1272



to top

>emb|AL954684.9| Mouse DNA sequence from clone RP24-352O9 on chromosome 2, complete
              sequence
          Length = 170478

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    ttgtggtcttgtactgacag 437
              ||||||||||||||||||||
Sbjct: 164281 ttgtggtcttgtactgacag 164262



to top

>emb|AL691474.29| Mouse DNA sequence from clone RP23-406D5 on chromosome 4, complete
             sequence
          Length = 176652

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ctaatcattagctacttgat 67
             ||||||||||||||||||||
Sbjct: 86469 ctaatcattagctacttgat 86488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,898,559
Number of Sequences: 3902068
Number of extensions: 3898559
Number of successful extensions: 71853
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71804
Number of HSP's gapped (non-prelim): 49
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top