ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507164.1| PREDICTED Oryza sativa (japonica cultivar-group... 88 3e-14
2ref|XM_480624.1| Oryza sativa (japonica cultivar-group), mRNA 88 3e-14
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
4dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
5dbj|AK120546.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
6dbj|AK108310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
7dbj|AK073315.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
8ref|XM_502442.1| Yarrowia lipolytica CLIB122, YALI0D05379g predi... 44 0.40
9emb|AJ720472.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.40
10ref|NM_001006262.1| Gallus gallus ankyrin repeat and SOCS box-co... 44 0.40
11gb|AC087771.3|AC087771 Genomic Sequence for Medicago truncatula,... 44 0.40
12dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
13gb|AF235153.1|AF235153 Neisseria gonorrhoeae strain FA1090 GNA19... 44 0.40
14gb|AF235152.1|AF235152 Neisseria gonorrhoeae strain NG-SN4 GNA19... 44 0.40
15gb|AF235151.1|AF235151 Neisseria gonorrhoeae strain NG-F62 GNA19... 44 0.40
16gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 44 0.40
17emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 44 0.40
18emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.6
19dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.6
20gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.6
21gb|AY225314.1| Ajellomyces capsulatus phosphatidylinositol-phosp... 42 1.6
22emb|BX931200.1| Gallus gallus finished cDNA, clone ChEST590e1 42 1.6
23gb|AC079773.8| Homo sapiens BAC clone RP11-258B17 from 2, comple... 42 1.6
24gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.6
25gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.3
26gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 6.3
27gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
28ref|XM_369091.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 6.3
29ref|XM_597651.2| PREDICTED: Bos taurus similar to Matrix metallo... 40 6.3
30gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.3
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.3
32gb|AY436590.1| Homo sapiens nuclear receptor subfamily 3, group ... 40 6.3
33gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare... 40 6.3
34emb|AL035079.14|HS53C18 Human DNA sequence from clone RP1-53C18 ... 40 6.3
35gb|CP000088.1| Thermobifida fusca YX, complete genome 40 6.3
36gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, compl... 40 6.3
37gb|AC114147.5| Rattus norvegicus BAC CH230-144F3 (Children's Ho... 40 6.3
38gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, comp... 40 6.3
39gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.3
40gb|AC013476.9| Homo sapiens BAC clone RP11-525G12 from 2, comple... 40 6.3
41gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 6.3
42dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
44gb|AC055858.18| Homo sapiens chromosome 17, clone RP11-682M7, co... 40 6.3
45dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.3
46dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
47dbj|AK109206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
48ref|XM_306223.2| Anopheles gambiae str. PEST ENSANGP00000000028 ... 40 6.3
49emb|AJ336378.1|HSA336378 Homo sapiens genomic sequence surroundi... 40 6.3
50dbj|AK103392.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
51emb|AJ335471.1|HSA335471 Homo sapiens genomic sequence surroundi... 40 6.3
52emb|AJ324750.1|HSA324750 Homo sapiens genomic sequence surroundi... 40 6.3
53gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 6.3
54gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence 40 6.3
55gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence 40 6.3
56gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.3
57gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
58gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.3
59gb|M32284.1|HUMGRPRA Homo sapiens glucocorticoid receptor gene, ... 40 6.3 
>ref|XM_507164.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E04.12
           mRNA
          Length = 1820

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 118/142 (83%), Gaps = 6/142 (4%)
 Strand = Plus / Plus

                                                                       
Query: 322 tctccgcgctttgtaaggtccggttcgaaccctgcctccgcgcgcgcgccgacgaggcgc 381
           ||||||||||  | ||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 318 tctccgcgctccggaagctccggttcgacccctccctccgcgcgcgcgccgacgaggcgc 377

                                                                       
Query: 382 tcttcggggagaagaatgcagggatgggagtggaagacgcggtggaggaagagcggncgc 441
           | |||||| || ||     |||| |||| ||||| || ||||||||||| |||||| |||
Sbjct: 378 tgttcgggaaggag-----aggggtggg-gtggacgatgcggtggaggaggagcggtcgc 431

                                 
Query: 442 ggnaggtggcgctcgcgctgct 463
           || |||| ||||| || |||||
Sbjct: 432 gggaggttgcgctggccctgct 453
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>ref|XM_480624.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1820

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 118/142 (83%), Gaps = 6/142 (4%)
 Strand = Plus / Plus

                                                                       
Query: 322 tctccgcgctttgtaaggtccggttcgaaccctgcctccgcgcgcgcgccgacgaggcgc 381
           ||||||||||  | ||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 318 tctccgcgctccggaagctccggttcgacccctccctccgcgcgcgcgccgacgaggcgc 377

                                                                       
Query: 382 tcttcggggagaagaatgcagggatgggagtggaagacgcggtggaggaagagcggncgc 441
           | |||||| || ||     |||| |||| ||||| || ||||||||||| |||||| |||
Sbjct: 378 tgttcgggaaggag-----aggggtggg-gtggacgatgcggtggaggaggagcggtcgc 431

                                 
Query: 442 ggnaggtggcgctcgcgctgct 463
           || |||| ||||| || |||||
Sbjct: 432 gggaggttgcgctggccctgct 453
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 118/142 (83%), Gaps = 6/142 (4%)
 Strand = Plus / Plus

                                                                           
Query: 322     tctccgcgctttgtaaggtccggttcgaaccctgcctccgcgcgcgcgccgacgaggcgc 381
               ||||||||||  | ||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 6266187 tctccgcgctccggaagctccggttcgacccctccctccgcgcgcgcgccgacgaggcgc 6266246

                                                                           
Query: 382     tcttcggggagaagaatgcagggatgggagtggaagacgcggtggaggaagagcggncgc 441
               | |||||| || ||     |||| |||| ||||| || ||||||||||| |||||| |||
Sbjct: 6266247 tgttcgggaaggag-----aggggtggg-gtggacgatgcggtggaggaggagcggtcgc 6266300

                                     
Query: 442     ggnaggtggcgctcgcgctgct 463
               || |||| ||||| || |||||
Sbjct: 6266301 gggaggttgcgctggccctgct 6266322
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>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1734_E04
          Length = 101439

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 118/142 (83%), Gaps = 6/142 (4%)
 Strand = Plus / Plus

                                                                         
Query: 322   tctccgcgctttgtaaggtccggttcgaaccctgcctccgcgcgcgcgccgacgaggcgc 381
             ||||||||||  | ||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 52324 tctccgcgctccggaagctccggttcgacccctccctccgcgcgcgcgccgacgaggcgc 52383

                                                                         
Query: 382   tcttcggggagaagaatgcagggatgggagtggaagacgcggtggaggaagagcggncgc 441
             | |||||| || ||     |||| |||| ||||| || ||||||||||| |||||| |||
Sbjct: 52384 tgttcgggaaggag-----aggggtggg-gtggacgatgcggtggaggaggagcggtcgc 52437

                                   
Query: 442   ggnaggtggcgctcgcgctgct 463
             || |||| ||||| || |||||
Sbjct: 52438 gggaggttgcgctggccctgct 52459
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>dbj|AK120546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129M01, full
           insert sequence
          Length = 1819

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 118/142 (83%), Gaps = 6/142 (4%)
 Strand = Plus / Plus

                                                                       
Query: 322 tctccgcgctttgtaaggtccggttcgaaccctgcctccgcgcgcgcgccgacgaggcgc 381
           ||||||||||  | ||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 317 tctccgcgctccggaagctccggttcgacccctccctccgcgcgcgcgccgacgaggcgc 376

                                                                       
Query: 382 tcttcggggagaagaatgcagggatgggagtggaagacgcggtggaggaagagcggncgc 441
           | |||||| || ||     |||| |||| ||||| || ||||||||||| |||||| |||
Sbjct: 377 tgttcgggaaggag-----aggggtggg-gtggacgatgcggtggaggaggagcggtcgc 430

                                 
Query: 442 ggnaggtggcgctcgcgctgct 463
           || |||| ||||| || |||||
Sbjct: 431 gggaggttgcgctggccctgct 452
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>dbj|AK108310.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F10, full
           insert sequence
          Length = 858

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 118/142 (83%), Gaps = 6/142 (4%)
 Strand = Plus / Plus

                                                                       
Query: 322 tctccgcgctttgtaaggtccggttcgaaccctgcctccgcgcgcgcgccgacgaggcgc 381
           ||||||||||  | ||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 339 tctccgcgctccggaagctccggttcgacccctccctccgcgcgcgcgccgacgaggcgc 398

                                                                       
Query: 382 tcttcggggagaagaatgcagggatgggagtggaagacgcggtggaggaagagcggncgc 441
           | |||||| || ||     |||| |||| ||||| || ||||||||||| |||||| |||
Sbjct: 399 tgttcgggaaggag-----aggggtggg-gtggacgatgcggtggaggaggagcggtcgc 452

                                 
Query: 442 ggnaggtggcgctcgcgctgct 463
           || |||| ||||| || |||||
Sbjct: 453 gggaggttgcgctggccctgct 474
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>dbj|AK073315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026B10, full
           insert sequence
          Length = 1819

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 116/142 (81%), Gaps = 6/142 (4%)
 Strand = Plus / Plus

                                                                       
Query: 322 tctccgcgctttgtaaggtccggttcgaaccctgcctccgcgcgcgcgccgacgaggcgc 381
           ||||||||||  | ||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 317 tctccgcgctccggaagctccggttcgacccctccctccgcgcgcgcgccgacgaggcgc 376

                                                                       
Query: 382 tcttcggggagaagaatgcagggatgggagtggaagacgcggtggaggaagagcggncgc 441
           | |||||| || |||      |||  || ||||| || ||||||||||| |||||| |||
Sbjct: 377 tgttcgggaaggaga------ggagtggggtggacgatgcggtggaggaggagcggtcgc 430

                                 
Query: 442 ggnaggtggcgctcgcgctgct 463
           || |||| ||||| || |||||
Sbjct: 431 gggaggttgcgctggccctgct 452
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>ref|XM_502442.1| Yarrowia lipolytica CLIB122, YALI0D05379g predicted mRNA
          Length = 3312

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 402  gggatgggagtggaagacgcggtggaggaagagc 435
            ||||||||||||| ||||| ||| ||||||||||
Sbjct: 1760 gggatgggagtggcagacgaggtagaggaagagc 1727
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>emb|AJ720472.1| Gallus gallus mRNA for hypothetical protein, clone 18g24
          Length = 1853

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 117  caaaaattaacctctcatacca 138
            ||||||||||||||||||||||
Sbjct: 1576 caaaaattaacctctcatacca 1555
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>ref|NM_001006262.1| Gallus gallus ankyrin repeat and SOCS box-containing 9 (ASB9), mRNA
          Length = 1853

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 117  caaaaattaacctctcatacca 138
            ||||||||||||||||||||||
Sbjct: 1576 caaaaattaacctctcatacca 1555
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>gb|AC087771.3|AC087771 Genomic Sequence for Medicago truncatula, clone 8D15, complete sequence
          Length = 69590

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 221   ctccgactccgccgcccacgac 242
             ||||||||||||||||||||||
Sbjct: 16693 ctccgactccgccgcccacgac 16672
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 48       ccgccgcctccttctgccgccg 69
                ||||||||||||||||||||||
Sbjct: 18883882 ccgccgcctccttctgccgccg 18883861



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 48       ccgccgcctccttctgccgccgcc 71
                |||||||||| |||||||||||||
Sbjct: 10026448 ccgccgcctcgttctgccgccgcc 10026471
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>gb|AF235153.1|AF235153 Neisseria gonorrhoeae strain FA1090 GNA1946 (gna1946) gene,
           complete cds
          Length = 867

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 60  tctgccgccgccccttctgccg 81
           ||||||||||||||||||||||
Sbjct: 91  tctgccgccgccccttctgccg 112
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>gb|AF235152.1|AF235152 Neisseria gonorrhoeae strain NG-SN4 GNA1946 (gna1946) gene,
           complete cds
          Length = 867

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 60  tctgccgccgccccttctgccg 81
           ||||||||||||||||||||||
Sbjct: 91  tctgccgccgccccttctgccg 112
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>gb|AF235151.1|AF235151 Neisseria gonorrhoeae strain NG-F62 GNA1946 (gna1946) gene,
           complete cds
          Length = 867

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 60  tctgccgccgccccttctgccg 81
           ||||||||||||||||||||||
Sbjct: 91  tctgccgccgccccttctgccg 112
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 60      tctgccgccgccccttctgccg 81
               ||||||||||||||||||||||
Sbjct: 2118343 tctgccgccgccccttctgccg 2118364
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 402    gggatgggagtggaagacgcggtggaggaagagc 435
              ||||||||||||| ||||| ||| ||||||||||
Sbjct: 696895 gggatgggagtggcagacgaggtagaggaagagc 696928
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 80     cgccatgcgccgcatcgtccg 100
              |||||||||||||||||||||
Sbjct: 272358 cgccatgcgccgcatcgtccg 272338
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 362     cgcgcgcgccgacgaggcgct 382
               |||||||||||||||||||||
Sbjct: 1128186 cgcgcgcgccgacgaggcgct 1128166
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 362    cgcgcgcgccgacgaggcgct 382
              |||||||||||||||||||||
Sbjct: 577655 cgcgcgcgccgacgaggcgct 577675
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>gb|AY225314.1| Ajellomyces capsulatus phosphatidylinositol-phosphatidylcholine
            transfer protein (SEC14) gene, complete cds
          Length = 1290

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 45   cctccgccgcctccttctgcc 65
            |||||||||||||||||||||
Sbjct: 1201 cctccgccgcctccttctgcc 1181
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>emb|BX931200.1| Gallus gallus finished cDNA, clone ChEST590e1
          Length = 1073

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 47  tccgccgcctccttctgccgccgcc 71
           ||||||||||| |||||||||||||
Sbjct: 301 tccgccgcctcgttctgccgccgcc 325
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>gb|AC079773.8| Homo sapiens BAC clone RP11-258B17 from 2, complete sequence
          Length = 129676

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 394   agaatgcagggatgggagtgg 414
             |||||||||||||||||||||
Sbjct: 42670 agaatgcagggatgggagtgg 42690
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 362     cgcgcgcgccgacgaggcgct 382
               |||||||||||||||||||||
Sbjct: 1161719 cgcgcgcgccgacgaggcgct 1161699
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 412     tggaagacgcggtggaggaagagc 435
               ||||||||||||| ||||||||||
Sbjct: 1082008 tggaagacgcggtcgaggaagagc 1081985
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    ccacccagttccctctcccc 155
              ||||||||||||||||||||
Sbjct: 127739 ccacccagttccctctcccc 127720
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>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16,
              complete sequence
          Length = 175425

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 48     ccgccgcctccttctgccgccgcc 71
              |||||||||||| |||||||||||
Sbjct: 130107 ccgccgcctcctgctgccgccgcc 130130
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>ref|XM_369091.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
          (MG00153.4) partial mRNA
          Length = 1086

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 42 aaccctccgccgcctccttc 61
          ||||||||||||||||||||
Sbjct: 58 aaccctccgccgcctccttc 77
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>ref|XM_597651.2| PREDICTED: Bos taurus similar to Matrix metalloproteinase-15
           precursor (MMP-15) (Membrane-type matrix
           metalloproteinase 2) (MT-MMP 2) (MTMMP2)
           (Membrane-type-2 matrix metalloproteinase) (MT2-MMP)
           (MT2MMP) (SMCP-2) (LOC519432), mRNA
          Length = 2028

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  ccgcctccttctgccgccgc 70
           ||||||||||||||||||||
Sbjct: 586 ccgcctccttctgccgccgc 567
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   gcgccgacgaggcgctcttc 386
             ||||||||||||||||||||
Sbjct: 81607 gcgccgacgaggcgctcttc 81626
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 45      cctccgccgcctccttctgccgcc 68
               ||||||||||||||||| ||||||
Sbjct: 5254967 cctccgccgcctccttccgccgcc 5254944
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>gb|AY436590.1| Homo sapiens nuclear receptor subfamily 3, group C, member 1
           (glucocorticoid receptor) (NR3C1) gene, complete cds
          Length = 127687

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  cgcctccttctgccgccgcc 71
           ||||||||||||||||||||
Sbjct: 734 cgcctccttctgccgccgcc 753
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>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3
             clone OSJNBa0021H20, complete sequence
          Length = 133079

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 45    cctccgccgcctccttctgccgcc 68
             ||||||||||||||||| ||||||
Sbjct: 78369 cctccgccgcctccttccgccgcc 78346
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>emb|AL035079.14|HS53C18 Human DNA sequence from clone RP1-53C18 on chromosome 11p12-13 Contains
              the CAT gene for Catalase, the first coding exon of the
              ortholog of rat Ankyrin repeat protein CCA3, a Recepin
              partial pseudogene, and a pseudogene similar to part of
              DNAJ proteins (HIRIP4, DNJ3, CPR3). Contains two CpG
              islands, complete sequence
          Length = 136284

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 48     ccgccgcctccttctgccgccgcc 71
              ||||| ||||||||||||||||||
Sbjct: 117519 ccgcctcctccttctgccgccgcc 117542
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     gccgccgccccttctgccgc 82
              ||||||||||||||||||||
Sbjct: 308387 gccgccgccccttctgccgc 308368
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>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence
          Length = 164668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     cgcctccttctgccgccgcc 71
              ||||||||||||||||||||
Sbjct: 122351 cgcctccttctgccgccgcc 122332
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>gb|AC114147.5| Rattus norvegicus  BAC CH230-144F3 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 214988

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 137    cacccagttccctctccccgtcca 160
              ||||||||||||||||||| ||||
Sbjct: 151459 cacccagttccctctccccatcca 151436
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>gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, complete sequence
          Length = 180225

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   tctccctcccaccctcggac 284
             ||||||||||||||||||||
Sbjct: 38543 tctccctcccaccctcggac 38524
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>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0091J11, from chromosome 3, complete sequence
          Length = 181163

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 45   cctccgccgcctccttctgccgcc 68
            ||||||||||||||||| ||||||
Sbjct: 1551 cctccgccgcctccttccgccgcc 1574
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>gb|AC013476.9| Homo sapiens BAC clone RP11-525G12 from 2, complete sequence
          Length = 142305

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    cccatccccagcctctggcg 303
              ||||||||||||||||||||
Sbjct: 102164 cccatccccagcctctggcg 102183
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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 445     aggtggcgctcgcgctgctt 464
               ||||||||||||||||||||
Sbjct: 1636503 aggtggcgctcgcgctgctt 1636484
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 48       ccgccgcctccttctgccgccgcc 71
                |||||||||||| |||||||||||
Sbjct: 19261319 ccgccgcctcctgctgccgccgcc 19261342



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 352      cctgcctccgcgcgcgcgcc 371
                ||||||||||||||||||||
Sbjct: 17609485 cctgcctccgcgcgcgcgcc 17609466
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 45      cctccgccgcctccttctgccgcc 68
               ||||||||||||||||| ||||||
Sbjct: 5254182 cctccgccgcctccttccgccgcc 5254159
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>gb|AC055858.18| Homo sapiens chromosome 17, clone RP11-682M7, complete sequence
          Length = 167395

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 53     gcctccttctgccgccgccccttc 76
              ||||||||||||||||||| ||||
Sbjct: 109645 gcctccttctgccgccgcctcttc 109622
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    gtggaagacgcggtggagga 430
              ||||||||||||||||||||
Sbjct: 169440 gtggaagacgcggtggagga 169421
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>dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0466E03
          Length = 138343

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    ccgccgcctccttctgccgccgcc 71
             |||||||||| |||||||||||||
Sbjct: 55752 ccgccgcctcgttctgccgccgcc 55775
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>dbj|AK109206.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-C09, full
           insert sequence
          Length = 668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  ccgccgcctccttctgccgccgcc 71
           |||||||||||| |||||||||||
Sbjct: 403 ccgccgcctcctgctgccgccgcc 426
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>ref|XM_306223.2| Anopheles gambiae str. PEST ENSANGP00000000028
           (ENSANGG00000000028), partial mRNA
          Length = 513

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 gcgcgccgacgaggcgctct 384
           ||||||||||||||||||||
Sbjct: 447 gcgcgccgacgaggcgctct 466
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>emb|AJ336378.1|HSA336378 Homo sapiens genomic sequence surrounding NotI site, clone NL6-IO4C
          Length = 325

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 48  ccgccgcctccttctgccgccgcc 71
           ||||| ||||||||||||||||||
Sbjct: 228 ccgcctcctccttctgccgccgcc 205
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>dbj|AK103392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127M05, full
           insert sequence
          Length = 1487

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 45  cctccgccgcctccttctgccgcc 68
           ||||||||||||||||| ||||||
Sbjct: 160 cctccgccgcctccttccgccgcc 183
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>emb|AJ335471.1|HSA335471 Homo sapiens genomic sequence surrounding NotI site, clone NL6-AH2R
          Length = 743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 48  ccgccgcctccttctgccgccgcc 71
           ||||| ||||||||||||||||||
Sbjct: 228 ccgcctcctccttctgccgccgcc 205
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>emb|AJ324750.1|HSA324750 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-BI10C
          Length = 646

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 48  ccgccgcctccttctgccgccgcc 71
           ||||| ||||||||||||||||||
Sbjct: 228 ccgcctcctccttctgccgccgcc 205
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    cgccgacgaggcgctcttcg 387
              ||||||||||||||||||||
Sbjct: 992704 cgccgacgaggcgctcttcg 992723
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>gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence
          Length = 282600

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    cctgcctccgcgcgcgcgcc 371
              ||||||||||||||||||||
Sbjct: 260393 cctgcctccgcgcgcgcgcc 260412



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    cctgcctccgcgcgcgcgcc 371
              ||||||||||||||||||||
Sbjct: 242698 cctgcctccgcgcgcgcgcc 242717
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>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    cctgcctccgcgcgcgcgcc 371
              ||||||||||||||||||||
Sbjct: 267391 cctgcctccgcgcgcgcgcc 267410



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    cctgcctccgcgcgcgcgcc 371
              ||||||||||||||||||||
Sbjct: 249697 cctgcctccgcgcgcgcgcc 249716
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 360     cgcgcgcgcgccgacgaggc 379
               ||||||||||||||||||||
Sbjct: 1997624 cgcgcgcgcgccgacgaggc 1997605
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 48       ccgccgcctccttctgccgccgcc 71
                |||||||||||| |||||||||||
Sbjct: 19420868 ccgccgcctcctgctgccgccgcc 19420891
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 411     gtggaagacgcggtggagga 430
               ||||||||||||||||||||
Sbjct: 1720360 gtggaagacgcggtggagga 1720379
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>gb|M32284.1|HUMGRPRA Homo sapiens glucocorticoid receptor gene, partial
          Length = 2518

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  cgcctccttctgccgccgcc 71
           ||||||||||||||||||||
Sbjct: 729 cgcctccttctgccgccgcc 748


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,213,573
Number of Sequences: 3902068
Number of extensions: 3213573
Number of successful extensions: 74226
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72997
Number of HSP's gapped (non-prelim): 1229
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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