ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465290.1| Oryza sativa (japonica cultivar-group), mRNA 94 2e-16
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 94 2e-16
3dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic D... 94 2e-16
4gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 46 0.051
5gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.20
6emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.20
7gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.20
8gb|AC139023.14| Mus musculus chromosome 1, clone RP23-430G15, co... 42 0.79
9gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 0.79
10gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.79
11emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete ... 42 0.79
12emb|BX640423.1| Bordetella parapertussis strain 12822, complete ... 42 0.79
13emb|BX640420.1| Bordetella pertussis strain Tohama I, complete g... 42 0.79
14gb|CP000249.1| Frankia sp. CcI3, complete genome 42 0.79
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.79
16dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.79
17dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.79
18dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.79
19dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.79
20gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.79
21ref|XM_472992.1| Oryza sativa (japonica cultivar-group), predic... 40 3.1
22gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 3.1
23ref|NM_010431.1| Mus musculus hypoxia inducible factor 1, alpha ... 40 3.1
24gb|BC026139.1| Mus musculus hypoxia inducible factor 1, alpha su... 40 3.1
25ref|NM_024359.1| Rattus norvegicus hypoxia inducible factor 1, a... 40 3.1
26ref|NM_007371.2| Homo sapiens bromodomain containing 3 (BRD3), mRNA 40 3.1
27gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 3.1
28ref|XM_844459.1| PREDICTED: Canis familiaris similar to brain an... 40 3.1
29gb|BC010699.1| Homo sapiens bromodomain containing 3, mRNA (cDNA... 40 3.1
30gb|AC124712.5| Mus musculus BAC clone RP24-103K4 from chromosome... 40 3.1
31emb|AL731553.12| Human DNA sequence from clone RP11-56M3 on chro... 40 3.1
32emb|AL591386.19| Human DNA sequence from clone RP11-349K21 on ch... 40 3.1
33gb|AF004141.1|AH006789S01 Mus musculus hypoxia-inducible factor ... 40 3.1
34emb|Y09507.1|RNHYPFAC1 R.norvegicus mRNA for hypoxia-inducible f... 40 3.1
35emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 40 3.1
36emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 3.1
37emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4,... 40 3.1
38dbj|AB243742.1| Nocardia farcinica rpoB gene for RNA polymerase ... 40 3.1
39gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 3.1
40dbj|AK138944.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 3.1
41dbj|AK150367.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 3.1
42gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 3.1
43gb|AF057308.1| Rattus norvegicus hypoxia-inducible factor-1 alph... 40 3.1
44dbj|AK034087.1| Mus musculus adult male diencephalon cDNA, RIKEN... 40 3.1
45dbj|AK017853.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 3.1
46dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
47dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
48gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.1
49dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.1
50dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
51dbj|D26362.1|HUMORFX Homo sapiens KIAA0043 mRNA, partial cds 40 3.1
52emb|AM176576.1| Streptomyces natalensis Pho regulon (phoU, phoR,... 40 3.1
53emb|Y13656.1|MMY13656 Mus musculus Hif1a gene, exon 1.2 40 3.1
54gb|AF003695.1|AF003695 Mus musculus hypoxia-inducible factor 1 a... 40 3.1
55gb|U59496.1|MMU59496 Mus musculus hypoxia-inducible factor 1 alp... 40 3.1
56emb|AJ715791.1| Spalax judaei mRNA for hypoxia inducible factor ... 40 3.1
57emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4,... 40 3.1
58gb|AC000387.1|AC000387 Genomic sequence from Human 9q34, complet... 40 3.1
59dbj|AP003484.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.1 
>ref|XM_465290.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 921

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                       
Query: 90  tctcgcggccgccgccctcccggctgcgcgcgtcgcacgtcatcttcgccttccctcgcc 149
           |||||| ||| ||||| || ||||| |||||||| ||| || ||||||||||||||||||
Sbjct: 83  tctcgctgcccccgccttctcggctacgcgcgtcccacctcctcttcgccttccctcgcc 142

                                          
Query: 150 tgaggaaatacggccgccggagccgcgagcc 180
           || |||||||||||||||||  |||||||||
Sbjct: 143 tgcggaaatacggccgccgggaccgcgagcc 173
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                            
Query: 90       tctcgcggccgccgccctcccggctgcgcgcgtcgcacgtcatcttcgccttccctcgcc 149
                |||||| ||| ||||| || ||||| |||||||| ||| || ||||||||||||||||||
Sbjct: 13126258 tctcgctgcccccgccttctcggctacgcgcgtcccacctcctcttcgccttccctcgcc 13126317

                                               
Query: 150      tgaggaaatacggccgccggagccgcgagcc 180
                || |||||||||||||||||  |||||||||
Sbjct: 13126318 tgcggaaatacggccgccgggaccgcgagcc 13126348
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>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0476C12
          Length = 157570

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                          
Query: 90     tctcgcggccgccgccctcccggctgcgcgcgtcgcacgtcatcttcgccttccctcgcc 149
              |||||| ||| ||||| || ||||| |||||||| ||| || ||||||||||||||||||
Sbjct: 102835 tctcgctgcccccgccttctcggctacgcgcgtcccacctcctcttcgccttccctcgcc 102894

                                             
Query: 150    tgaggaaatacggccgccggagccgcgagcc 180
              || |||||||||||||||||  |||||||||
Sbjct: 102895 tgcggaaatacggccgccgggaccgcgagcc 102925
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 50      accgcgtgctgcgccgccgcggc 72
               |||||||||||||||||||||||
Sbjct: 1538708 accgcgtgctgcgccgccgcggc 1538686
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 50     accgcgtgctgcgccgccgcgg 71
              ||||||||||||||||||||||
Sbjct: 102180 accgcgtgctgcgccgccgcgg 102201



 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 61     cgccgccgcggcgtcggcccc 81
              |||||||||||||||||||||
Sbjct: 546390 cgccgccgcggcgtcggcccc 546410
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 50      accgcgtgctgcgccgccgcgg 71
               ||||||||||||||||||||||
Sbjct: 1497772 accgcgtgctgcgccgccgcgg 1497793



 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 61      cgccgccgcggcgtcggcccc 81
               |||||||||||||||||||||
Sbjct: 1865677 cgccgccgcggcgtcggcccc 1865697
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 50      accgcgtgctgcgccgccgcgg 71
               ||||||||||||||||||||||
Sbjct: 1081681 accgcgtgctgcgccgccgcgg 1081702
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>gb|AC139023.14| Mus musculus chromosome 1, clone RP23-430G15, complete sequence
          Length = 207067

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 25   gccactgctacagctacagct 45
            |||||||||||||||||||||
Sbjct: 4853 gccactgctacagctacagct 4873
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 44      ctgccgaccgcgtgctgcgcc 64
               |||||||||||||||||||||
Sbjct: 1634068 ctgccgaccgcgtgctgcgcc 1634088



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 45      tgccgaccgcgtgctgcgcc 64
               ||||||||||||||||||||
Sbjct: 1095758 tgccgaccgcgtgctgcgcc 1095777
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>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0096I10, complete sequence
          Length = 171946

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 99    cgccgccctcccggctgcgcgcgtcgcac 127
             |||||| || |||||||||||||||||||
Sbjct: 33170 cgccgcgcttccggctgcgcgcgtcgcac 33198
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>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 47     ccgaccgcgtgctgcgccgcc 67
              |||||||||||||||||||||
Sbjct: 186902 ccgaccgcgtgctgcgccgcc 186882
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>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 47     ccgaccgcgtgctgcgccgcc 67
              |||||||||||||||||||||
Sbjct: 190349 ccgaccgcgtgctgcgccgcc 190329
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>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 47     ccgaccgcgtgctgcgccgcc 67
              |||||||||||||||||||||
Sbjct: 157500 ccgaccgcgtgctgcgccgcc 157520
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 108     cccggctgcgcgcgtcgcacg 128
               |||||||||||||||||||||
Sbjct: 5175125 cccggctgcgcgcgtcgcacg 5175105
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 99       cgccgccctcccggctgcgcgcgtcgcac 127
                |||||| || |||||||||||||||||||
Sbjct: 24375819 cgccgcgcttccggctgcgcgcgtcgcac 24375791
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 97       gccgccgccctcccggctgcgcgcg 121
                |||||||||| ||||||||||||||
Sbjct: 16521367 gccgccgcccgcccggctgcgcgcg 16521343



 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 61       cgccgccgcggcgtcggcccc 81
                |||||||||||||||||||||
Sbjct: 15268086 cgccgccgcggcgtcggcccc 15268066
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>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1123_B08
          Length = 134028

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 97    gccgccgccctcccggctgcgcgcg 121
             |||||||||| ||||||||||||||
Sbjct: 53592 gccgccgcccgcccggctgcgcgcg 53568
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>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1740_D06
          Length = 187410

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 61     cgccgccgcggcgtcggcccc 81
              |||||||||||||||||||||
Sbjct: 162062 cgccgccgcggcgtcggcccc 162042
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0418B08
          Length = 165909

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    cgccgccgcggcgtcggcccc 81
             |||||||||||||||||||||
Sbjct: 47275 cgccgccgcggcgtcggcccc 47255
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 99       cgccgccctcccggctgcgcgcgtcgcac 127
                |||||| || |||||||||||||||||||
Sbjct: 24687488 cgccgcgcttccggctgcgcgcgtcgcac 24687460
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>ref|XM_472992.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   cgccgccgcggcgtcggccc 80
            ||||||||||||||||||||
Sbjct: 1308 cgccgccgcggcgtcggccc 1289
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 47      ccgaccgcgtgctgcgccgc 66
               ||||||||||||||||||||
Sbjct: 1780500 ccgaccgcgtgctgcgccgc 1780519
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>ref|NM_010431.1| Mus musculus hypoxia inducible factor 1, alpha subunit (Hif1a),
           mRNA
          Length = 3973

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 287 cttctcgttctcgccgccggcgccctcc 260
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>gb|BC026139.1| Mus musculus hypoxia inducible factor 1, alpha subunit, mRNA (cDNA
           clone MGC:13907 IMAGE:4019056), complete cds
          Length = 4183

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 305 cttctcgttctcgccgccggcgccctcc 278
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>ref|NM_024359.1| Rattus norvegicus hypoxia inducible factor 1, alpha subunit
           (Hif1a), mRNA
          Length = 3718

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 53  cttctcgttctcgccgccggcgccctcc 26
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>ref|NM_007371.2| Homo sapiens bromodomain containing 3 (BRD3), mRNA
          Length = 3085

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 acggccgccggagccgcgag 178
           ||||||||||||||||||||
Sbjct: 2   acggccgccggagccgcgag 21
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     gcgccgccgcggcgtcggcc 79
              ||||||||||||||||||||
Sbjct: 502278 gcgccgccgcggcgtcggcc 502297
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>ref|XM_844459.1| PREDICTED: Canis familiaris similar to brain and acute leukemia,
           cytoplasmic isoform 1 (LOC612780), mRNA
          Length = 628

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 gccgccggagccgcgagccg 181
           ||||||||||||||||||||
Sbjct: 138 gccgccggagccgcgagccg 157
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>gb|BC010699.1| Homo sapiens bromodomain containing 3, mRNA (cDNA clone
           IMAGE:3873627), with apparent retained intron
          Length = 2085

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 acggccgccggagccgcgag 178
           ||||||||||||||||||||
Sbjct: 21  acggccgccggagccgcgag 40
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>gb|AC124712.5| Mus musculus BAC clone RP24-103K4 from chromosome 12, complete sequence
          Length = 169132

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 82    cttctcgttctcgcggccgccgccctcc 109
             |||||||||||||| |||| ||||||||
Sbjct: 89864 cttctcgttctcgccgccggcgccctcc 89837
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>emb|AL731553.12| Human DNA sequence from clone RP11-56M3 on chromosome 10 Contains a
             nudix (nucleoside diphosphate linked moiety X)-type
             pseudogene, complete sequence
          Length = 99089

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   ctcccggctgcgcgcgtcgc 125
             ||||||||||||||||||||
Sbjct: 85664 ctcccggctgcgcgcgtcgc 85683
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>emb|AL591386.19| Human DNA sequence from clone RP11-349K21 on chromosome 9, complete
            sequence
          Length = 69657

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 159  acggccgccggagccgcgag 178
            ||||||||||||||||||||
Sbjct: 8142 acggccgccggagccgcgag 8123
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>gb|AF004141.1|AH006789S01 Mus musculus hypoxia-inducible factor 1 alpha (Hif1a) gene, exon 1
          Length = 292

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 287 cttctcgttctcgccgccggcgccctcc 260
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>emb|Y09507.1|RNHYPFAC1 R.norvegicus mRNA for hypoxia-inducible factor 1
          Length = 2711

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 153 cttctcgttctcgccgccggcgccctcc 126
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gccgaccgcgtgctgcgccg 65
             ||||||||||||||||||||
Sbjct: 87942 gccgaccgcgtgctgcgccg 87923
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tgcgccgccgcggcgtcggc 78
              ||||||||||||||||||||
Sbjct: 294409 tgcgccgccgcggcgtcggc 294428
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>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16,
             complete sequence
          Length = 146313

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    cgccgccgcggcgtcggccc 80
             ||||||||||||||||||||
Sbjct: 82077 cgccgccgcggcgtcggccc 82096
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>dbj|AB243742.1| Nocardia farcinica rpoB gene for RNA polymerase beta subunit,
           partial cds
          Length = 772

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  gaccgcgtgctgcgccgccgcggc 72
           |||||||||||| |||||||||||
Sbjct: 700 gaccgcgtgctgtgccgccgcggc 723
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      gtgctgcgccgccgcggcgt 74
               ||||||||||||||||||||
Sbjct: 4066305 gtgctgcgccgccgcggcgt 4066286
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>dbj|AK138944.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530024A18 product:hypoxia
           inducible factor 1, alpha subunit, full insert sequence
          Length = 1611

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 317 cttctcgttctcgccgccggcgccctcc 290
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>dbj|AK150367.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830005L04 product:hypoxia
           inducible factor 1, alpha subunit, full insert sequence
          Length = 3985

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 320 cttctcgttctcgccgccggcgccctcc 293
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 47      ccgaccgcgtgctgcgccgc 66
               ||||||||||||||||||||
Sbjct: 4196713 ccgaccgcgtgctgcgccgc 4196694
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>gb|AF057308.1| Rattus norvegicus hypoxia-inducible factor-1 alpha (Hif1a) mRNA,
           complete cds
          Length = 3718

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 53  cttctcgttctcgccgccggcgccctcc 26
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>dbj|AK034087.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length
           enriched library, clone:9330155D13 product:hypoxia
           inducible factor 1, alpha subunit, full insert sequence
          Length = 4752

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 416 cttctcgttctcgccgccggcgccctcc 389
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>dbj|AK017853.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730564B02 product:hypoxia
           inducible factor 1, alpha subunit, full insert sequence
          Length = 1657

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 314 cttctcgttctcgccgccggcgccctcc 287
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 61       cgccgccgcggcgtcggccc 80
                ||||||||||||||||||||
Sbjct: 24522446 cgccgccgcggcgtcggccc 24522465
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 22       aatgccactgctacagctac 41
                ||||||||||||||||||||
Sbjct: 20388907 aatgccactgctacagctac 20388926
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 62      gccgccgcggcgtcggcccc 81
               ||||||||||||||||||||
Sbjct: 3939542 gccgccgcggcgtcggcccc 3939561
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 49      gaccgcgtgctgcgccgccgcggc 72
               |||||||||||| |||||||||||
Sbjct: 5399656 gaccgcgtgctgtgccgccgcggc 5399633
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>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0678G09
          Length = 139220

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    aatgccactgctacagctac 41
             ||||||||||||||||||||
Sbjct: 97807 aatgccactgctacagctac 97826
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>dbj|D26362.1|HUMORFX Homo sapiens KIAA0043 mRNA, partial cds
          Length = 3028

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 acggccgccggagccgcgag 178
           ||||||||||||||||||||
Sbjct: 2   acggccgccggagccgcgag 21
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>emb|AM176576.1| Streptomyces natalensis Pho regulon (phoU, phoR, phoP and lpp
            (partial) genes)
          Length = 3940

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   cgtgctgcgccgccgcggcg 73
            ||||||||||||||||||||
Sbjct: 2952 cgtgctgcgccgccgcggcg 2971
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>emb|Y13656.1|MMY13656 Mus musculus Hif1a gene, exon 1.2
          Length = 2933

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 82   cttctcgttctcgcggccgccgccctcc 109
            |||||||||||||| |||| ||||||||
Sbjct: 1709 cttctcgttctcgccgccggcgccctcc 1682
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>gb|AF003695.1|AF003695 Mus musculus hypoxia-inducible factor 1 alpha (Hif1a) mRNA,
           complete cds
          Length = 3973

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 287 cttctcgttctcgccgccggcgccctcc 260
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>gb|U59496.1|MMU59496 Mus musculus hypoxia-inducible factor 1 alpha (HIF1alpha) mRNA,
           complete cds
          Length = 3867

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 297 cttctcgttctcgccgccggcgccctcc 270
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>emb|AJ715791.1| Spalax judaei mRNA for hypoxia inducible factor 1 alpha (hif-1a
           gene)
          Length = 2475

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 82  cttctcgttctcgcggccgccgccctcc 109
           |||||||||||||| |||| ||||||||
Sbjct: 30  cttctcgttctcgccgccggcgccctcc 3
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>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20,
              complete sequence
          Length = 116983

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     cgccgccgcggcgtcggccc 80
              ||||||||||||||||||||
Sbjct: 115768 cgccgccgcggcgtcggccc 115787
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>gb|AC000387.1|AC000387 Genomic sequence from Human 9q34, complete sequence
          Length = 39261

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 159  acggccgccggagccgcgag 178
            ||||||||||||||||||||
Sbjct: 4132 acggccgccggagccgcgag 4113
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>dbj|AP003484.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-734C14, complete
             sequence
          Length = 206750

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    atgccactgctacagctacagctg 46
             ||||||| ||||||||||||||||
Sbjct: 48257 atgccacggctacagctacagctg 48234


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,448,217
Number of Sequences: 3902068
Number of extensions: 1448217
Number of successful extensions: 37973
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36477
Number of HSP's gapped (non-prelim): 1496
length of query: 243
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 221
effective length of database: 17,147,199,772
effective search space: 3789531149612
effective search space used: 3789531149612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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