ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b 99 2e-21
2RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-bindin... 99 3e-21
3RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c 99 3e-21
4RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore... 61 6e-10
5RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2) 61 8e-10
6RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore... 60 2e-09
7YRB1_YEAST (P41920) Ran-specific GTPase-activating protein 1 (Ra... 60 2e-09
8RANG_HUMAN (P43487) Ran-specific GTPase-activating protein (Ran-... 54 1e-07
9RANG_SCHPO (Q09717) Ran-specific GTPase-activating protein 1 (Ra... 54 1e-07
10RANG_MOUSE (P34022) Ran-specific GTPase-activating protein (Ran-... 54 1e-07
11RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6) 52 3e-07
12RBP23_HUMAN (O14715) Ran-binding protein 2-like 3 (RanBP2L3) (Fr... 52 5e-07
13RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing prot... 52 5e-07
14RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2) 52 5e-07
15RANB3_PONPY (Q5R4Y2) Ran-binding protein 3 (RanBP3) 47 2e-05
16RANB3_HUMAN (Q9H6Z4) Ran-binding protein 3 (RanBP3) 47 2e-05
17RANB3_MACFA (Q4R4T9) Ran-binding protein 3 (RanBP3) 47 2e-05
18RANB3_MOUSE (Q9CT10) Ran-binding protein 3 (RanBP3) 45 5e-05
19HBA1_SCHPO (Q09146) Brefeldin A resistance protein (Caffeine res... 42 5e-04
20YRB2_YEAST (P40517) Ran-specific GTPase-activating protein 2 (Ra... 41 8e-04
21NGK7_SCHPO (Q9USL4) Putative nucleoporin C18B5.07c 38 0.007
22NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2)... 33 0.14
23NUP50_MOUSE (Q9JIH2) Nucleoporin 50 kDa (Nuclear pore-associated... 29 2.6
24NUP50_RAT (O08587) Nucleoporin 50 kDa (Nuclear pore-associated p... 29 2.6
25NUP50_HUMAN (Q9UKX7) Nucleoporin 50 kDa (Nuclear pore-associated... 29 3.3
26FLGH_PSEPU (Q52081) Flagellar L-ring protein precursor (Basal bo... 28 4.4
27BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associa... 28 5.7
28BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-assoc... 28 5.7

>RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b|
          Length = 217

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 46/52 (88%), Positives = 51/52 (98%)
 Frame = +3

Query: 177 TGAQVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           TGAQVAPIVRLEEVAVTTGEEDED++LD+K+KLYRFDKDG+QWKERG GTVK
Sbjct: 26  TGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAGTVK 77



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>RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-binding protein|
           siRanBP)
          Length = 228

 Score = 98.6 bits (244), Expect = 3e-21
 Identities = 46/52 (88%), Positives = 50/52 (96%)
 Frame = +3

Query: 177 TGAQVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           TGAQVAPIVRLEEVAVTTGEEDED++LD+K+KLYRFDKD NQWKERG GTVK
Sbjct: 24  TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVK 75



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>RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c|
          Length = 219

 Score = 98.6 bits (244), Expect = 3e-21
 Identities = 45/52 (86%), Positives = 51/52 (98%)
 Frame = +3

Query: 177 TGAQVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           TGAQVAPIVRLEEVAVTTGEEDED++LD+K+K+YRFDK+GNQWKERG GTVK
Sbjct: 23  TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVK 74



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>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein|
            Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270)
          Length = 3224

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 28/46 (60%), Positives = 35/46 (76%)
 Frame = +3

Query: 195  PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            PIV L EV V +GEEDE+ L   +AKLYR+D+D +QWKERG G +K
Sbjct: 2914 PIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIK 2959



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180  GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            G    P+V L + V V++GEE+E  +   +AKLYR+DKD  QWKERG G +K
Sbjct: 2307 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIK 2358



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180  GAQVAPIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            G    P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK
Sbjct: 1169 GPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVK 1220



 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195  PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            P+V++ E+V + TGEEDE  L   + KL+RFD + +QWKERG G +K
Sbjct: 2015 PVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLK 2061



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>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)|
          Length = 3053

 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 28/46 (60%), Positives = 35/46 (76%)
 Frame = +3

Query: 195  PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            PIV L EV V +GEEDE+ L   +AKLYR+D+D +QWKERG G +K
Sbjct: 2743 PIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDVSQWKERGIGDIK 2788



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180  GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            G    P+V L + V V++GEE+E  +   +AKLYR+DKD  QWKERG G +K
Sbjct: 2144 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIK 2195



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180  GAQVAPIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            G    P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK
Sbjct: 1163 GPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVK 1214



 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195  PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            P+V++ E+V + TGEEDE  L   + KL+RFD + +QWKERG G +K
Sbjct: 1852 PVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEISQWKERGLGNLK 1898



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>RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore complex|
           protein Nup358) (Nucleoporin Nup358) (358 kDa
           nucleoporin) (P270) (Fragment)
          Length = 1085

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = +3

Query: 195 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           PIV L EV V +GEEDE+ L   +AKLYR+D++ +QWK+RG G +K
Sbjct: 775 PIVSLPEVEVKSGEEDEEILFKERAKLYRWDREASQWKDRGVGDIK 820



 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           G    P+V L + V V++GEE+E  +   +AKLYR+DKD  QWKERG G +K
Sbjct: 172 GQHFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDAGQWKERGIGDIK 223



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>YRB1_YEAST (P41920) Ran-specific GTPase-activating protein 1 (Ran-binding|
           protein 1) (RANBP1) (Perinuclear array-localized
           protein)
          Length = 201

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 27/46 (58%), Positives = 34/46 (73%)
 Frame = +3

Query: 195 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           P+V LE+V V T EEDE+ L  ++AKL+RFD D  +WKERGTG  K
Sbjct: 67  PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCK 112



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>RANG_HUMAN (P43487) Ran-specific GTPase-activating protein (Ran-binding|
           protein 1) (RanBP1)
          Length = 201

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
 Frame = +3

Query: 186 QVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRF--DKDGNQWKERGTGTVK 332
           Q  PIV L E  + T EEDE+ L  M+AKL+RF  + D  +WKERGTG VK
Sbjct: 26  QFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVK 76



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>RANG_SCHPO (Q09717) Ran-specific GTPase-activating protein 1 (Ran-binding|
           protein 1) (RANBP1) (Spi1-binding protein)
          Length = 215

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 24/46 (52%), Positives = 31/46 (67%)
 Frame = +3

Query: 195 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           PIV+L  V   T EE+E     M+AKL+RFDK  ++WKERGTG  +
Sbjct: 77  PIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDAR 122



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>RANG_MOUSE (P34022) Ran-specific GTPase-activating protein (Ran-binding|
           protein 1) (RANBP1) (HpaII tiny fragments locus 9a
           protein)
          Length = 203

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
 Frame = +3

Query: 186 QVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRF--DKDGNQWKERGTGTVK 332
           Q  PIV L E  + T EEDE+ L  M+AKL+RF  + D  +WKERGTG VK
Sbjct: 26  QFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVK 76



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>RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)|
          Length = 1748

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180  GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            G    P+V L + V V++GEE+E  +   +A+LYR+DKD  QWKERG G +K
Sbjct: 1316 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAELYRYDKDVGQWKERGIGDIK 1367



 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195  PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            P+V++ E+V + TGEE E  L     KL+RFD + +QWKERG G +K
Sbjct: 1024 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEISQWKERGLGNLK 1070



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>RBP23_HUMAN (O14715) Ran-binding protein 2-like 3 (RanBP2L3) (Fragment)|
          Length = 755

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           G    P+V L + V V++GEE+E  +   +A++YR+DKD  QWKERG G +K
Sbjct: 321 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIK 372



 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           P+V++ E+V + TGEE E  L     KL+RFD +  QWKERG G +K
Sbjct: 29  PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLK 75



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>RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing protein 8|
            (Ran-binding protein 2-like 1) (RanBP2L1) (Sperm membrane
            protein BS-63)
          Length = 1765

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180  GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            G    P+V L + V V++GEE+E  +   +A++YR+DKD  QWKERG G +K
Sbjct: 1331 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIK 1382



 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195  PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            P+V++ E+V + TGEE E  L     KL+RFD + +QWKERG G +K
Sbjct: 1039 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVSQWKERGLGNLK 1085



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>RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2)|
          Length = 1765

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180  GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            G    P+V L + V V++GEE+E  +   +A++YR+DKD  QWKERG G +K
Sbjct: 1331 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIK 1382



 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195  PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
            P+V++ E+V + TGEE E  L     KL+RFD +  QWKERG G +K
Sbjct: 1039 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLK 1085



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>RANB3_PONPY (Q5R4Y2) Ran-binding protein 3 (RanBP3)|
          Length = 494

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +3

Query: 207 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           LE+V V TGEE E ++L M+ KL+ FDK    W ERG G ++
Sbjct: 313 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLR 354



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>RANB3_HUMAN (Q9H6Z4) Ran-binding protein 3 (RanBP3)|
          Length = 567

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +3

Query: 207 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           LE+V V TGEE E ++L M+ KL+ FDK    W ERG G ++
Sbjct: 386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLR 427



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>RANB3_MACFA (Q4R4T9) Ran-binding protein 3 (RanBP3)|
          Length = 499

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +3

Query: 207 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           LE+V V TGEE E ++L M+ KL+ FDK    W ERG G ++
Sbjct: 318 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLR 359



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>RANB3_MOUSE (Q9CT10) Ran-binding protein 3 (RanBP3)|
          Length = 491

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 20/42 (47%), Positives = 28/42 (66%)
 Frame = +3

Query: 207 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           LE+V V TGEE E ++L ++ KL+ FDK    W ERG G ++
Sbjct: 310 LEKVEVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLR 351



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>HBA1_SCHPO (Q09146) Brefeldin A resistance protein (Caffeine resistance|
           protein 1)
          Length = 399

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +3

Query: 204 RLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           +L +  + TGEE+E+S+  ++A+LY    +   WKERG G +K
Sbjct: 262 QLSDSEIITGEEEEESIFSVRARLYVVADEKKTWKERGQGILK 304



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>YRB2_YEAST (P40517) Ran-specific GTPase-activating protein 2 (Ran-binding|
           protein 2) (RANBP2)
          Length = 327

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +3

Query: 201 VRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           ++L++  V +GEE E+ +  + AKLY+       WKERG G +K
Sbjct: 198 LKLQKQEVKSGEESEECIYQVNAKLYQLSNIKEGWKERGVGIIK 241



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>NGK7_SCHPO (Q9USL4) Putative nucleoporin C18B5.07c|
          Length = 565

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 231 GEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           GEE+EDS+ + +AK+YRFD     + + G G +K
Sbjct: 448 GEENEDSVFETRAKIYRFDATSKSYSDIGIGPLK 481



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>NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)|
          Length = 720

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 216 VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332
           + +  GEEDE +L   KAKL  F+ +   +  RG G +K
Sbjct: 597 INLQNGEEDEVALFSQKAKLMTFNAETKSYDSRGVGEMK 635



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>NUP50_MOUSE (Q9JIH2) Nucleoporin 50 kDa (Nuclear pore-associated protein 60|
           kDa-like)
          Length = 466

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 222 VTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTV 329
           V T  ++ED+    K KL  F K  N++KE+G GT+
Sbjct: 346 VVTEVKEEDAFYSKKCKL--FYKKDNEFKEKGVGTL 379



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>NUP50_RAT (O08587) Nucleoporin 50 kDa (Nuclear pore-associated protein 60|
           kDa-like)
          Length = 467

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 222 VTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTV 329
           V T  ++ED+    K KL  F K  N++KE+G GT+
Sbjct: 347 VVTEVKEEDAFYSKKCKL--FYKKDNEFKEKGVGTL 380



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>NUP50_HUMAN (Q9UKX7) Nucleoporin 50 kDa (Nuclear pore-associated protein 60|
           kDa-like)
          Length = 468

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 222 VTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTV 329
           V T  ++ED+    K KL  F K  N++KE+G GT+
Sbjct: 348 VVTEVKEEDAFYSKKCKL--FYKKDNEFKEKGIGTL 381



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>FLGH_PSEPU (Q52081) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 231

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 324 CLCPSPSTGSRPYRTCIASPSCR 256
           C+ P+PS  +R  R C  +P CR
Sbjct: 19  CVAPTPSPTTRTMRRCCRAPRCR 41



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>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1096

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 23  PPSRRRVDSEVASAPPPNPS 82
           PPS   VDS    APPP P+
Sbjct: 409 PPSSATVDSSTEGAPPPGPA 428



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>BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1154

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 23  PPSRRRVDSEVASAPPPNPS 82
           PPS   VDS    APPP P+
Sbjct: 415 PPSSTTVDSSTEGAPPPGPA 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,435,586
Number of Sequences: 219361
Number of extensions: 250160
Number of successful extensions: 1219
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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