| Clone Name | bast75a03 |
|---|---|
| Clone Library Name | barley_pub |
>RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b| Length = 217 Score = 99.4 bits (246), Expect = 2e-21 Identities = 46/52 (88%), Positives = 51/52 (98%) Frame = +3 Query: 177 TGAQVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 TGAQVAPIVRLEEVAVTTGEEDED++LD+K+KLYRFDKDG+QWKERG GTVK Sbjct: 26 TGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAGTVK 77
>RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-binding protein| siRanBP) Length = 228 Score = 98.6 bits (244), Expect = 3e-21 Identities = 46/52 (88%), Positives = 50/52 (96%) Frame = +3 Query: 177 TGAQVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 TGAQVAPIVRLEEVAVTTGEEDED++LD+K+KLYRFDKD NQWKERG GTVK Sbjct: 24 TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVK 75
>RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c| Length = 219 Score = 98.6 bits (244), Expect = 3e-21 Identities = 45/52 (86%), Positives = 51/52 (98%) Frame = +3 Query: 177 TGAQVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 TGAQVAPIVRLEEVAVTTGEEDED++LD+K+K+YRFDK+GNQWKERG GTVK Sbjct: 23 TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVK 74
>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein| Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) Length = 3224 Score = 61.2 bits (147), Expect = 6e-10 Identities = 28/46 (60%), Positives = 35/46 (76%) Frame = +3 Query: 195 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 PIV L EV V +GEEDE+ L +AKLYR+D+D +QWKERG G +K Sbjct: 2914 PIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIK 2959 Score = 53.9 bits (128), Expect = 1e-07 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 180 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K Sbjct: 2307 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIK 2358 Score = 53.5 bits (127), Expect = 1e-07 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Frame = +3 Query: 180 GAQVAPIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 G P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK Sbjct: 1169 GPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVK 1220 Score = 52.8 bits (125), Expect = 2e-07 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Frame = +3 Query: 195 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 P+V++ E+V + TGEEDE L + KL+RFD + +QWKERG G +K Sbjct: 2015 PVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLK 2061
>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)| Length = 3053 Score = 60.8 bits (146), Expect = 8e-10 Identities = 28/46 (60%), Positives = 35/46 (76%) Frame = +3 Query: 195 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 PIV L EV V +GEEDE+ L +AKLYR+D+D +QWKERG G +K Sbjct: 2743 PIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDVSQWKERGIGDIK 2788 Score = 53.9 bits (128), Expect = 1e-07 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 180 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K Sbjct: 2144 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIK 2195 Score = 53.5 bits (127), Expect = 1e-07 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Frame = +3 Query: 180 GAQVAPIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 G P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK Sbjct: 1163 GPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVK 1214 Score = 52.4 bits (124), Expect = 3e-07 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Frame = +3 Query: 195 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 P+V++ E+V + TGEEDE L + KL+RFD + +QWKERG G +K Sbjct: 1852 PVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEISQWKERGLGNLK 1898
>RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore complex| protein Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) (Fragment) Length = 1085 Score = 59.7 bits (143), Expect = 2e-09 Identities = 26/46 (56%), Positives = 35/46 (76%) Frame = +3 Query: 195 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 PIV L EV V +GEEDE+ L +AKLYR+D++ +QWK+RG G +K Sbjct: 775 PIVSLPEVEVKSGEEDEEILFKERAKLYRWDREASQWKDRGVGDIK 820 Score = 55.5 bits (132), Expect = 3e-08 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 180 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K Sbjct: 172 GQHFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDAGQWKERGIGDIK 223
>YRB1_YEAST (P41920) Ran-specific GTPase-activating protein 1 (Ran-binding| protein 1) (RANBP1) (Perinuclear array-localized protein) Length = 201 Score = 59.7 bits (143), Expect = 2e-09 Identities = 27/46 (58%), Positives = 34/46 (73%) Frame = +3 Query: 195 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 P+V LE+V V T EEDE+ L ++AKL+RFD D +WKERGTG K Sbjct: 67 PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCK 112
>RANG_HUMAN (P43487) Ran-specific GTPase-activating protein (Ran-binding| protein 1) (RanBP1) Length = 201 Score = 53.5 bits (127), Expect = 1e-07 Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 2/51 (3%) Frame = +3 Query: 186 QVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRF--DKDGNQWKERGTGTVK 332 Q PIV L E + T EEDE+ L M+AKL+RF + D +WKERGTG VK Sbjct: 26 QFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVK 76
>RANG_SCHPO (Q09717) Ran-specific GTPase-activating protein 1 (Ran-binding| protein 1) (RANBP1) (Spi1-binding protein) Length = 215 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/46 (52%), Positives = 31/46 (67%) Frame = +3 Query: 195 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 PIV+L V T EE+E M+AKL+RFDK ++WKERGTG + Sbjct: 77 PIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDAR 122
>RANG_MOUSE (P34022) Ran-specific GTPase-activating protein (Ran-binding| protein 1) (RANBP1) (HpaII tiny fragments locus 9a protein) Length = 203 Score = 53.5 bits (127), Expect = 1e-07 Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 2/51 (3%) Frame = +3 Query: 186 QVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRF--DKDGNQWKERGTGTVK 332 Q PIV L E + T EEDE+ L M+AKL+RF + D +WKERGTG VK Sbjct: 26 QFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVK 76
>RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)| Length = 1748 Score = 52.4 bits (124), Expect = 3e-07 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 180 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 G P+V L + V V++GEE+E + +A+LYR+DKD QWKERG G +K Sbjct: 1316 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAELYRYDKDVGQWKERGIGDIK 1367 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Frame = +3 Query: 195 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 P+V++ E+V + TGEE E L KL+RFD + +QWKERG G +K Sbjct: 1024 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEISQWKERGLGNLK 1070
>RBP23_HUMAN (O14715) Ran-binding protein 2-like 3 (RanBP2L3) (Fragment)| Length = 755 Score = 51.6 bits (122), Expect = 5e-07 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 180 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 G P+V L + V V++GEE+E + +A++YR+DKD QWKERG G +K Sbjct: 321 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIK 372 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = +3 Query: 195 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 P+V++ E+V + TGEE E L KL+RFD + QWKERG G +K Sbjct: 29 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLK 75
>RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing protein 8| (Ran-binding protein 2-like 1) (RanBP2L1) (Sperm membrane protein BS-63) Length = 1765 Score = 51.6 bits (122), Expect = 5e-07 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 180 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 G P+V L + V V++GEE+E + +A++YR+DKD QWKERG G +K Sbjct: 1331 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIK 1382 Score = 48.5 bits (114), Expect = 4e-06 Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Frame = +3 Query: 195 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 P+V++ E+V + TGEE E L KL+RFD + +QWKERG G +K Sbjct: 1039 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVSQWKERGLGNLK 1085
>RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2)| Length = 1765 Score = 51.6 bits (122), Expect = 5e-07 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 180 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 G P+V L + V V++GEE+E + +A++YR+DKD QWKERG G +K Sbjct: 1331 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIK 1382 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = +3 Query: 195 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 P+V++ E+V + TGEE E L KL+RFD + QWKERG G +K Sbjct: 1039 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLK 1085
>RANB3_PONPY (Q5R4Y2) Ran-binding protein 3 (RanBP3)| Length = 494 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/42 (50%), Positives = 28/42 (66%) Frame = +3 Query: 207 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 LE+V V TGEE E ++L M+ KL+ FDK W ERG G ++ Sbjct: 313 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLR 354
>RANB3_HUMAN (Q9H6Z4) Ran-binding protein 3 (RanBP3)| Length = 567 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/42 (50%), Positives = 28/42 (66%) Frame = +3 Query: 207 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 LE+V V TGEE E ++L M+ KL+ FDK W ERG G ++ Sbjct: 386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLR 427
>RANB3_MACFA (Q4R4T9) Ran-binding protein 3 (RanBP3)| Length = 499 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/42 (50%), Positives = 28/42 (66%) Frame = +3 Query: 207 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 LE+V V TGEE E ++L M+ KL+ FDK W ERG G ++ Sbjct: 318 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLR 359
>RANB3_MOUSE (Q9CT10) Ran-binding protein 3 (RanBP3)| Length = 491 Score = 45.1 bits (105), Expect = 5e-05 Identities = 20/42 (47%), Positives = 28/42 (66%) Frame = +3 Query: 207 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 LE+V V TGEE E ++L ++ KL+ FDK W ERG G ++ Sbjct: 310 LEKVEVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLR 351
>HBA1_SCHPO (Q09146) Brefeldin A resistance protein (Caffeine resistance| protein 1) Length = 399 Score = 41.6 bits (96), Expect = 5e-04 Identities = 17/43 (39%), Positives = 28/43 (65%) Frame = +3 Query: 204 RLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 +L + + TGEE+E+S+ ++A+LY + WKERG G +K Sbjct: 262 QLSDSEIITGEEEEESIFSVRARLYVVADEKKTWKERGQGILK 304
>YRB2_YEAST (P40517) Ran-specific GTPase-activating protein 2 (Ran-binding| protein 2) (RANBP2) Length = 327 Score = 40.8 bits (94), Expect = 8e-04 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = +3 Query: 201 VRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 ++L++ V +GEE E+ + + AKLY+ WKERG G +K Sbjct: 198 LKLQKQEVKSGEESEECIYQVNAKLYQLSNIKEGWKERGVGIIK 241
>NGK7_SCHPO (Q9USL4) Putative nucleoporin C18B5.07c| Length = 565 Score = 37.7 bits (86), Expect = 0.007 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = +3 Query: 231 GEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 GEE+EDS+ + +AK+YRFD + + G G +K Sbjct: 448 GEENEDSVFETRAKIYRFDATSKSYSDIGIGPLK 481
>NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)| Length = 720 Score = 33.5 bits (75), Expect = 0.14 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 216 VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK 332 + + GEEDE +L KAKL F+ + + RG G +K Sbjct: 597 INLQNGEEDEVALFSQKAKLMTFNAETKSYDSRGVGEMK 635
>NUP50_MOUSE (Q9JIH2) Nucleoporin 50 kDa (Nuclear pore-associated protein 60| kDa-like) Length = 466 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +3 Query: 222 VTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTV 329 V T ++ED+ K KL F K N++KE+G GT+ Sbjct: 346 VVTEVKEEDAFYSKKCKL--FYKKDNEFKEKGVGTL 379
>NUP50_RAT (O08587) Nucleoporin 50 kDa (Nuclear pore-associated protein 60| kDa-like) Length = 467 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +3 Query: 222 VTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTV 329 V T ++ED+ K KL F K N++KE+G GT+ Sbjct: 347 VVTEVKEEDAFYSKKCKL--FYKKDNEFKEKGVGTL 380
>NUP50_HUMAN (Q9UKX7) Nucleoporin 50 kDa (Nuclear pore-associated protein 60| kDa-like) Length = 468 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +3 Query: 222 VTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTV 329 V T ++ED+ K KL F K N++KE+G GT+ Sbjct: 348 VVTEVKEEDAFYSKKCKL--FYKKDNEFKEKGIGTL 381
>FLGH_PSEPU (Q52081) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 231 Score = 28.5 bits (62), Expect = 4.4 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -2 Query: 324 CLCPSPSTGSRPYRTCIASPSCR 256 C+ P+PS +R R C +P CR Sbjct: 19 CVAPTPSPTTRTMRRCCRAPRCR 41
>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) Length = 1096 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +2 Query: 23 PPSRRRVDSEVASAPPPNPS 82 PPS VDS APPP P+ Sbjct: 409 PPSSATVDSSTEGAPPPGPA 428
>BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) Length = 1154 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +2 Query: 23 PPSRRRVDSEVASAPPPNPS 82 PPS VDS APPP P+ Sbjct: 415 PPSSTTVDSSTEGAPPPGPA 434 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,435,586 Number of Sequences: 219361 Number of extensions: 250160 Number of successful extensions: 1219 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 1147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1214 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)