ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast74h10 |
|---|---|
| Clone Library Name | barley_pub |
>Y245_SYNY3 (P72702) Hypothetical protein slr0245| Length = 304 Score = 35.0 bits (79), Expect = 0.084 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Frame = +3 Query: 240 HPENADRVRNMVSILRRGPIAPFLSWHSGVPAHAS---ELLSFHSPEYIDELVQANASGG 410 HPE R+ + + LR+ P A +L W P + +L HS EY+++L + GG Sbjct: 19 HPECPARLTAIATALRKMPGANYLHWQKPSPVTWNLDPYILRCHSQEYLNKLAKLAELGG 78 Query: 411 KKLCEGTFLNP 443 L T ++P Sbjct: 79 GSLDADTPVSP 89
>HDAC6_MOUSE (Q9Z2V5) Histone deacetylase 6 (HD6) (Histone deacetylase mHDA2)| Length = 1149 Score = 33.9 bits (76), Expect = 0.19 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 234 DHHPENADRVRNMVSILRRGPIAPFLSWHSGVPAHASELLSFHSPEYIDEL 386 +HHPE R+ ++ L +A PA SELL+ HS EY++ L Sbjct: 497 NHHPETPQRILRIMCHLEEVGLAARCLILPARPALGSELLTCHSAEYVEHL 547
>VSI6_TRYBB (P06014) Variant surface glycoprotein ILTAT 1.3 precursor (VSG)| Length = 503 Score = 32.3 bits (72), Expect = 0.55 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = +3 Query: 183 GRGLFDSGRDPGFLDVLD-HHPENADRVRNMVS 278 G+ L+ SGR GF+DVLD H EN+ + +N ++ Sbjct: 120 GQALYTSGRLDGFIDVLDGHRSENSGQNKNCIA 152
>HPSE2_ARATH (Q8L608) Heparanase-like protein 2 precursor (EC 3.2.-.-)| Length = 539 Score = 30.0 bits (66), Expect = 2.7 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%) Frame = +3 Query: 213 PGFLDVLDHH-----PENADRVRNMVSILRRGPIAP-FLSWHSGVPAHASELLSFHSP-- 368 PG LDVL HH P N ++ N + + P +LS S + A+ ++ + H P Sbjct: 258 PGVLDVLTHHIYNLGPGNDPKLVNKI-------LDPNYLSGISELFANVNQTIQEHGPWA 310 Query: 369 -EYIDELVQANASGGKKLCEGTFLN 440 ++ E A SGG+++ E TF+N Sbjct: 311 AAWVGEAGGAFNSGGRQVSE-TFIN 334
>RIMB2_HUMAN (O15034) RIM-binding protein 2 (RIM-BP2)| Length = 1052 Score = 30.0 bits (66), Expect = 2.7 Identities = 25/85 (29%), Positives = 38/85 (44%) Frame = +3 Query: 153 WHEGMLAHDAGRGLFDSGRDPGFLDVLDHHPENADRVRNMVSILRRGPIAPFLSWHSGVP 332 ++EG L D RGL S F+D + D + S L F++ HSG+ Sbjct: 211 FYEGELL-DGQRGLVPSN----FVDFVQ------DNESRLASTLGNEQDQNFIN-HSGIG 258 Query: 333 AHASELLSFHSPEYIDELVQANASG 407 +L HSP +ID + N++G Sbjct: 259 LEGEHILDLHSPTHIDAGITDNSAG 283
>HDAC_MAIZE (P56521) Probable histone deacetylase (RPD3 homolog)| Length = 513 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +3 Query: 240 HPENADRVRNMVSILRRGPIAPFLSWHSGVPAHASELLSFHSPEYIDEL 386 HP R+R S+L R + + + PA EL FH+ EYI+ L Sbjct: 42 HPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRFHAEEYINFL 90
>IPA4_SHIFL (P18009) 65.4 kDa antigen| Length = 574 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 11/81 (13%) Frame = +3 Query: 63 ELRRPATMDSSSSSVAAEGAPPAAENLAVFWH---EGMLAHDAGRGLFDS--------GR 209 +L A + S +VAA+ + +A+ W+ + +L H A GLFD+ GR Sbjct: 357 KLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGR 416 Query: 210 DPGFLDVLDHHPENADRVRNM 272 + L++L+ D+VR + Sbjct: 417 EMFRLEILEDIAR--DKVRTL 435
>HDAC6_HUMAN (Q9UBN7) Histone deacetylase 6 (HD6)| Length = 1215 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 237 HHPENADRVRNMVSILRRGPIAPFLSWHSGVPAHASELLSFHSPEYIDEL 386 HHPE R+ ++ L +A + PA +ELL+ HS EY+ L Sbjct: 499 HHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHSAEYVGHL 548
>RPD3_YEAST (P32561) Histone deacetylase RPD3 (Transcriptional regulatory| protein RPD3) Length = 433 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +3 Query: 240 HPENADRVRNMVSILRRGPIAPFLSWHSGVPAHASELLSFHSPEYIDEL 386 HP R+R S++ + + + PA E+ FH+ EYID L Sbjct: 38 HPMKPHRIRMAHSLIMNYGLYKKMEIYRAKPATKQEMCQFHTDEYIDFL 86
>IPA7_SHIFL (P18014) 60 kDa antigen| Length = 532 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 11/81 (13%) Frame = +3 Query: 63 ELRRPATMDSSSSSVAAEGAPPAAENLAVFWH---EGMLAHDAGRGLFDS--------GR 209 +L A + S +VAA+ + +A+ W+ + +L H A GLFD+ GR Sbjct: 302 KLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGR 361 Query: 210 DPGFLDVLDHHPENADRVRNM 272 + L++L+ D+VR + Sbjct: 362 EMFRLEILEDIAR--DKVRTL 380
>DLGP4_HUMAN (Q9Y2H0) Disks large-associated protein 4 (DAP-4)| (SAP90/PSD-95-associated protein 4) (SAPAP4) (PSD-95/SAP90-binding protein 4) Length = 989 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = -1 Query: 316 QERKGAMGPRRRMETMLRTRSAFSGWWSSTSRKPGSRPESNRPRPAS 176 +ER A P+RR +RS SGWWSS G PAS Sbjct: 185 KERAKAGEPKRR------SRSNISGWWSSDDNLDGEAGAFRSSGPAS 225
>V120_HHV11 (P10221) Capsid assembly protein UL37| Length = 1123 Score = 29.3 bits (64), Expect = 4.6 Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Frame = +3 Query: 123 PPAAENLAVFWHEGMLAHDAGRGLFDS--------GRDPGFLDVLDHHPENADRVRNMVS 278 PP A AV + M HDA R L S L V D N+++ Sbjct: 807 PPEAMGDAVSQYCSMY-HDAKRALVASLASLRSVITETTAHLGVCDELAAQVSHEDNVLA 865 Query: 279 ILRRGPIAPFLSWHSGVPAHASELLS 356 ++RR I FLS SG+ A AS+LLS Sbjct: 866 VVRR-EIHGFLSVVSGIHARASKLLS 890
>G6PI_MYCSM (P96803) Glucose-6-phosphate isomerase (GPI) (EC 5.3.1.9)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 442 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 9 AQSPASVNRRLDITNHHRELRRPATMDSSSSSVAAEGAPPAAENLAVFWHE 161 AQS A + D++ L++ TM+S+ SV A+G P + + +FW E Sbjct: 221 AQSRAVLPYSNDLSRFAAYLQQ-LTMESNGKSVRADGTPVSTDTGEIFWGE 270
>HOS2_YEAST (P53096) Probable histone deacetylase HOS2| Length = 452 Score = 29.3 bits (64), Expect = 4.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 Query: 333 AHASELLSFHSPEYIDELVQANASGGKKLCEGTFLN 440 A ELL FHS +Y++ L + + KL GT N Sbjct: 76 ATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLEN 111
>G6PI_MYCTU (P64192) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 553 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +3 Query: 81 TMDSSSSSVAAEGAPPAAENLAVFWHE 161 TM+S+ S A+G+P +A+ +FW E Sbjct: 355 TMESNGKSTRADGSPVSADTGEIFWGE 381
>G6PI_MYCBO (P64193) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 553 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +3 Query: 81 TMDSSSSSVAAEGAPPAAENLAVFWHE 161 TM+S+ S A+G+P +A+ +FW E Sbjct: 355 TMESNGKSTRADGSPVSADTGEIFWGE 381
>LYOX_BOVIN (P33072) Protein-lysine 6-oxidase precursor (EC 1.4.3.13) (Lysyl| oxidase) Length = 418 Score = 28.5 bits (62), Expect = 7.9 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = +3 Query: 78 ATMDSSSSSVAAEGAP-PAAENLAVFWHEGMLAHDAGRGLFDSGRDPGFLDVLDH-HPEN 251 A + ++ S AA G P PAA + + AHDAG D+ PG + L + P N Sbjct: 101 ARVRTAGPSAAAAGRPRPAARHWFQAGYSTSGAHDAGTSRADNQTAPGEVPTLSNLRPPN 160 Query: 252 ADRVRNMV 275 V MV Sbjct: 161 RVEVDGMV 168
>VILI2_ARATH (O81644) Villin-2| Length = 976 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 Query: 295 GPRRRMETMLRTRSAFSGWWSSTSRKPGSRP 203 GPR+R E + SAF+ SST P RP Sbjct: 789 GPRQRAEALAALSSAFNSSSSSTKSPPPPRP 819
>XERC_STAES (Q7ZAJ4) Tyrosine recombinase xerC| Length = 296 Score = 28.5 bits (62), Expect = 7.9 Identities = 9/24 (37%), Positives = 20/24 (83%) Frame = -3 Query: 443 GVQESSLTQLLASTGVRLNELVNV 372 G+++ + +LL +TG+R++EL+N+ Sbjct: 129 GIRDKVIIELLYATGIRVSELINI 152
>XERC_STAEQ (Q5HPU0) Tyrosine recombinase xerC| Length = 296 Score = 28.5 bits (62), Expect = 7.9 Identities = 9/24 (37%), Positives = 20/24 (83%) Frame = -3 Query: 443 GVQESSLTQLLASTGVRLNELVNV 372 G+++ + +LL +TG+R++EL+N+ Sbjct: 129 GIRDKVIIELLYATGIRVSELINI 152
>LDH_BOTBR (P93052) L-lactate dehydrogenase (EC 1.1.1.27) (LDH)| Length = 316 Score = 28.5 bits (62), Expect = 7.9 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 9/86 (10%) Frame = +3 Query: 189 GLFDSGRDPGFL---------DVLDHHPENADRVRNMVSILRRGPIAPFLSWHSGVPAHA 341 G+ DSGR FL VL H +N MV +L + SG+P Sbjct: 146 GVLDSGRFSHFLAEEFGVSVNSVLGGHGDN------MVPVLEYSTV-------SGIPVSE 192 Query: 342 SELLSFHSPEYIDELVQANASGGKKL 419 + F + E +DE+++ GG ++ Sbjct: 193 LIEMGFSTKEKVDEIIKRTRGGGGEI 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,043,675 Number of Sequences: 219361 Number of extensions: 699450 Number of successful extensions: 3399 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3002 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3397 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
