ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast74h10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107M16, full insert sequence Length = 2802 Score = 412 bits (208), Expect = e-112 Identities = 307/340 (90%) Strand = Plus / Plus Query: 103 cggtggctgcggagggggcgcctccggcggcggagaatctggcggtgttctggcacgagg 162 ||||||| |||||||||||||| || ||| |||| | |||||||||||||||||||||| Sbjct: 131 cggtggcggcggagggggcgccggcgacgggggagcagctggcggtgttctggcacgagg 190 Query: 163 gcatgctggcccacgacgccggccgcggcctgttcgactcgggccgcgacccgggcttcc 222 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 191 gcatggtggcccacgacgccggccgcggcgtgttcgactcgggccgcgacccgggcttcc 250 Query: 223 tggacgtgctcgaccaccacccggagaacgccgaccgcgtccgcaacatggtctccatcc 282 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 tcgacgtgctcgaccagcacccggagaacgccgaccgcgtccgcaacatggtctccatcc 310 Query: 283 tccgccgcgggcccatcgcgcccttcctctcctggcactccggcgtccccgcccacgcca 342 |||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||| Sbjct: 311 tccgccgcggccccatcgcgcgcttcatctcctggcactccggccgccccgcccacgccg 370 Query: 343 gcgagctcctctccttccactccccagaatacattgacgagctcgttcaggcgaacgcca 402 |||||||||||||||||||||| | |||||||| || |||||||| || || || ||| Sbjct: 371 ccgagctcctctccttccactccgccgaatacatagaggagctcgtgcaagcaaatgccg 430 Query: 403 gtggaggcaagaagttgtgtgagggaactttcttgaaccc 442 ||| | ||||||| ||||||| || |||||||||||||| Sbjct: 431 ttggtgccaagaagctgtgtgaaggcactttcttgaaccc 470
>dbj|AK073094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011G24, full insert sequence Length = 2171 Score = 412 bits (208), Expect = e-112 Identities = 307/340 (90%) Strand = Plus / Plus Query: 103 cggtggctgcggagggggcgcctccggcggcggagaatctggcggtgttctggcacgagg 162 ||||||| |||||||||||||| || ||| |||| | |||||||||||||||||||||| Sbjct: 131 cggtggcggcggagggggcgccggcgacgggggagcagctggcggtgttctggcacgagg 190 Query: 163 gcatgctggcccacgacgccggccgcggcctgttcgactcgggccgcgacccgggcttcc 222 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 191 gcatggtggcccacgacgccggccgcggcgtgttcgactcgggccgcgacccgggcttcc 250 Query: 223 tggacgtgctcgaccaccacccggagaacgccgaccgcgtccgcaacatggtctccatcc 282 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 tcgacgtgctcgaccagcacccggagaacgccgaccgcgtccgcaacatggtctccatcc 310 Query: 283 tccgccgcgggcccatcgcgcccttcctctcctggcactccggcgtccccgcccacgcca 342 |||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||| Sbjct: 311 tccgccgcggccccatcgcgcgcttcatctcctggcactccggccgccccgcccacgccg 370 Query: 343 gcgagctcctctccttccactccccagaatacattgacgagctcgttcaggcgaacgcca 402 |||||||||||||||||||||| | |||||||| || |||||||| || || || ||| Sbjct: 371 ccgagctcctctccttccactccgccgaatacatagaggagctcgtgcaagcaaatgccg 430 Query: 403 gtggaggcaagaagttgtgtgagggaactttcttgaaccc 442 ||| | ||||||| ||||||| || |||||||||||||| Sbjct: 431 ttggtgccaagaagctgtgtgaaggcactttcttgaaccc 470
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 379 bits (191), Expect = e-102 Identities = 245/263 (93%) Strand = Plus / Minus Query: 103 cggtggctgcggagggggcgcctccggcggcggagaatctggcggtgttctggcacgagg 162 ||||||| |||||||||||||| || ||| |||| | |||||||||||||||||||||| Sbjct: 12130 cggtggcggcggagggggcgccggcgacgggggagcagctggcggtgttctggcacgagg 12071 Query: 163 gcatgctggcccacgacgccggccgcggcctgttcgactcgggccgcgacccgggcttcc 222 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 12070 gcatggtggcccacgacgccggccgcggcgtgttcgactcgggccgcgacccgggcttcc 12011 Query: 223 tggacgtgctcgaccaccacccggagaacgccgaccgcgtccgcaacatggtctccatcc 282 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12010 tcgacgtgctcgaccagcacccggagaacgccgaccgcgtccgcaacatggtctccatcc 11951 Query: 283 tccgccgcgggcccatcgcgcccttcctctcctggcactccggcgtccccgcccacgcca 342 |||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||| Sbjct: 11950 tccgccgcggccccatcgcgcgcttcatctcctggcactccggccgccccgcccacgccg 11891 Query: 343 gcgagctcctctccttccactcc 365 |||||||||||||||||||||| Sbjct: 11890 ccgagctcctctccttccactcc 11868 Score = 335 bits (169), Expect = 7e-89 Identities = 208/221 (94%) Strand = Plus / Minus Query: 144 gcggtgttctggcacgagggcatgctggcccacgacgccggccgcggcctgttcgactcg 203 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | Sbjct: 18775 gcggtgttctggcacgagggcatgctggcccacgacgccggccgcggcgtgttcggcagg 18716 Query: 204 ggccgcgacccgggcttcctggacgtgctcgaccaccacccggagaacgccgaccgcgtc 263 |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 18715 ggcctcgacccgggcttcctcgacgtgctcgaccatcacccggagaacgccgaccgcgtc 18656 Query: 264 cgcaacatggtctccatcctccgccgcgggcccatcgcgcccttcctctcctggcactcc 323 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct: 18655 cgcaacatggtctccatcctccgccgcggccccatcgcgcgcttcctctcctggcactcc 18596 Query: 324 ggcgtccccgcccacgccagcgagctcctctccttccactc 364 ||| ||||||||||||| ||||||||||||||||||||| Sbjct: 18595 ggccgccccgcccacgccgccgagctcctctccttccactc 18555 Score = 48.1 bits (24), Expect = 0.025 Identities = 63/76 (82%) Strand = Plus / Minus Query: 367 cagaatacattgacgagctcgttcaggcgaacgccagtggaggcaagaagttgtgtgagg 426 |||||||||| || |||||||| || || || ||| ||| | ||||||| ||||||| | Sbjct: 11685 cagaatacatagaggagctcgtgcaagcaaatgccgttggtgccaagaagctgtgtgaag 11626 Query: 427 gaactttcttgaaccc 442 | |||||||||||||| Sbjct: 11625 gcactttcttgaaccc 11610
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 379 bits (191), Expect = e-102 Identities = 245/263 (93%) Strand = Plus / Minus Query: 103 cggtggctgcggagggggcgcctccggcggcggagaatctggcggtgttctggcacgagg 162 ||||||| |||||||||||||| || ||| |||| | |||||||||||||||||||||| Sbjct: 21419047 cggtggcggcggagggggcgccggcgacgggggagcagctggcggtgttctggcacgagg 21418988 Query: 163 gcatgctggcccacgacgccggccgcggcctgttcgactcgggccgcgacccgggcttcc 222 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 21418987 gcatggtggcccacgacgccggccgcggcgtgttcgactcgggccgcgacccgggcttcc 21418928 Query: 223 tggacgtgctcgaccaccacccggagaacgccgaccgcgtccgcaacatggtctccatcc 282 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21418927 tcgacgtgctcgaccagcacccggagaacgccgaccgcgtccgcaacatggtctccatcc 21418868 Query: 283 tccgccgcgggcccatcgcgcccttcctctcctggcactccggcgtccccgcccacgcca 342 |||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||| Sbjct: 21418867 tccgccgcggccccatcgcgcgcttcatctcctggcactccggccgccccgcccacgccg 21418808 Query: 343 gcgagctcctctccttccactcc 365 |||||||||||||||||||||| Sbjct: 21418807 ccgagctcctctccttccactcc 21418785 Score = 335 bits (169), Expect = 7e-89 Identities = 208/221 (94%) Strand = Plus / Minus Query: 144 gcggtgttctggcacgagggcatgctggcccacgacgccggccgcggcctgttcgactcg 203 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | Sbjct: 21425692 gcggtgttctggcacgagggcatgctggcccacgacgccggccgcggcgtgttcggcagg 21425633 Query: 204 ggccgcgacccgggcttcctggacgtgctcgaccaccacccggagaacgccgaccgcgtc 263 |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 21425632 ggcctcgacccgggcttcctcgacgtgctcgaccatcacccggagaacgccgaccgcgtc 21425573 Query: 264 cgcaacatggtctccatcctccgccgcgggcccatcgcgcccttcctctcctggcactcc 323 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct: 21425572 cgcaacatggtctccatcctccgccgcggccccatcgcgcgcttcctctcctggcactcc 21425513 Query: 324 ggcgtccccgcccacgccagcgagctcctctccttccactc 364 ||| ||||||||||||| ||||||||||||||||||||| Sbjct: 21425512 ggccgccccgcccacgccgccgagctcctctccttccactc 21425472 Score = 48.1 bits (24), Expect = 0.025 Identities = 63/76 (82%) Strand = Plus / Minus Query: 367 cagaatacattgacgagctcgttcaggcgaacgccagtggaggcaagaagttgtgtgagg 426 |||||||||| || |||||||| || || || ||| ||| | ||||||| ||||||| | Sbjct: 21418602 cagaatacatagaggagctcgtgcaagcaaatgccgttggtgccaagaagctgtgtgaag 21418543 Query: 427 gaactttcttgaaccc 442 | |||||||||||||| Sbjct: 21418542 gcactttcttgaaccc 21418527
>ref|NM_100719.1| Arabidopsis thaliana histone deacetylase AT1G08460 mRNA, complete cds Length = 1341 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 179 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 238 Query: 300 gc 301 || Sbjct: 239 gc 240
>gb|AY097371.1| Arabidopsis thaliana At1g08460/T27G7_7 mRNA, complete cds Length = 1134 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 115 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 174 Query: 300 gc 301 || Sbjct: 175 gc 176
>gb|AF428369.1|AF428369 Arabidopsis thaliana At1g08460/T27G7_7 mRNA, complete cds Length = 1165 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 4 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 63 Query: 300 gc 301 || Sbjct: 64 gc 65
>gb|AF410272.1|AF410272 Arabidopsis thaliana At1g08460/T27G7_7 mRNA, complete cds Length = 1341 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 179 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 238 Query: 300 gc 301 || Sbjct: 239 gc 240
>emb|BX815091.1|CNS0ACDE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS31ZE09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1293 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 155 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 214 Query: 300 gc 301 || Sbjct: 215 gc 216
>emb|BX814006.1|CNS0AC7C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB51ZH09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1238 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 120 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 179 Query: 300 gc 301 || Sbjct: 180 gc 181
>emb|BX814793.1|CNS0ABZW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB94ZE10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1261 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 131 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 190 Query: 300 gc 301 || Sbjct: 191 gc 192
>emb|BX814789.1|CNS0ABYV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB94ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1265 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 131 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 190 Query: 300 gc 301 || Sbjct: 191 gc 192
>emb|BX814512.1|CNS0AAJN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB77ZH10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1231 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 131 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 190 Query: 300 gc 301 || Sbjct: 191 gc 192
>gb|AC006932.8|AC006932 Genomic sequence for Arabidopsis thaliana BAC T27G7 from chromosome I, complete sequence Length = 89479 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 53475 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 53534 Query: 300 gc 301 || Sbjct: 53535 gc 53536
>gb|AF510167.1| Arabidopsis thaliana HDA8 mRNA, complete cds Length = 1134 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 240 cacccggagaacgccgaccgcgtccgcaacatggtctccatcctccgccgcgggcccatc 299 ||||||||||||||||| |||||| | |||||| | || || ||||| ||||| |||||| Sbjct: 115 cacccggagaacgccgatcgcgtcaggaacatgctttcgattctccgacgcggtcccatc 174 Query: 300 gc 301 || Sbjct: 175 gc 176
>dbj|AP001831.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-317J19, complete sequence Length = 185919 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 345 gagctcctctccttccactccc 366 |||||||||||||||||||||| Sbjct: 76416 gagctcctctccttccactccc 76395
>gb|BC108290.1| Homo sapiens loricrin, mRNA (cDNA clone MGC:111513 IMAGE:4754528), complete cds Length = 1293 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 ggctgcggagggggcgcctccggcggcgg 135 |||||||| |||||| ||||||||||||| Sbjct: 241 ggctgcggcgggggctcctccggcggcgg 269
>gb|BC034690.1| Homo sapiens loricrin, mRNA (cDNA clone MGC:21357 IMAGE:4752776), complete cds Length = 1280 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 ggctgcggagggggcgcctccggcggcgg 135 |||||||| |||||| ||||||||||||| Sbjct: 220 ggctgcggcgggggctcctccggcggcgg 248
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 cggtgttctggcacgagggca 165 ||||||||||||||||||||| Sbjct: 3702219 cggtgttctggcacgagggca 3702239
>ref|XM_843910.1| PREDICTED: Canis familiaris similar to family with sequence similarity 40, member B, transcript variant 2 (LOC482261), mRNA Length = 2505 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 gactcctcttcctcctcggtggctg 111 ||||||||||||||||| ||||||| Sbjct: 1130 gactcctcttcctcctctgtggctg 1106
>ref|XM_539380.2| PREDICTED: Canis familiaris similar to family with sequence similarity 40, member B, transcript variant 1 (LOC482261), mRNA Length = 2277 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 gactcctcttcctcctcggtggctg 111 ||||||||||||||||| ||||||| Sbjct: 1130 gactcctcttcctcctctgtggctg 1106
>emb|AL161636.21| Human DNA sequence from clone RP1-140J1 on chromosome 1 Contains a novel gene, two novel small proline rich proteins, a ribosomal protein, large, P0 (RPLP0) pseudogene, the LOR gene for loricri and the 3' end of the PGLYRPIalpha gene for peptidoglycan recognition protein-I-alpha, complete sequence Length = 137712 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 ggctgcggagggggcgcctccggcggcgg 135 |||||||| |||||| ||||||||||||| Sbjct: 92488 ggctgcggcgggggctcctccggcggcgg 92516
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 ctcctcttcctcctcggtggc 109 ||||||||||||||||||||| Sbjct: 469472 ctcctcttcctcctcggtggc 469452
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 cggtgttctggcacgagggca 165 ||||||||||||||||||||| Sbjct: 239668 cggtgttctggcacgagggca 239688
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 cggtgttctggcacgagggca 165 ||||||||||||||||||||| Sbjct: 218856 cggtgttctggcacgagggca 218876
>emb|CR536555.1| Homo sapiens full open reading frame cDNA clone RZPDo834H1020D for gene LOR, loricrin; complete cds, incl. stopcodon Length = 951 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 ggctgcggagggggcgcctccggcggcgg 135 |||||||| |||||| ||||||||||||| Sbjct: 187 ggctgcggcgggggctcctccggcggcgg 215
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 gacccgggcttcctggacgtgctcg 234 ||||||||||||||||||| ||||| Sbjct: 2704197 gacccgggcttcctggacgcgctcg 2704221
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 gacccgggcttcctggacgtg 230 ||||||||||||||||||||| Sbjct: 1488399 gacccgggcttcctggacgtg 1488379
>ref|NM_000427.1| Homo sapiens loricrin (LOR), mRNA Length = 1218 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 ggctgcggagggggcgcctccggcggcgg 135 |||||||| |||||| ||||||||||||| Sbjct: 220 ggctgcggcgggggctcctccggcggcgg 248
>gb|M94077.1|HUMLORI Human loricrin gene exons 1 and 2, complete cds Length = 3321 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 ggctgcggagggggcgcctccggcggcgg 135 |||||||| |||||| ||||||||||||| Sbjct: 1814 ggctgcggcgggggctcctccggcggcgg 1842
>gb|M61120.1|HUMLORAA Human loricrin mRNA, complete cds Length = 1218 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 ggctgcggagggggcgcctccggcggcgg 135 |||||||| |||||| ||||||||||||| Sbjct: 220 ggctgcggcgggggctcctccggcggcgg 248
>dbj|AB013076.1| Homo sapiens gene for loricrin, complete cds Length = 1238 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 ggctgcggagggggcgcctccggcggcgg 135 |||||||| |||||| ||||||||||||| Sbjct: 330 ggctgcggcgggggctcctccggcggcgg 358
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 cgacgccggccgcggcctgt 195 |||||||||||||||||||| Sbjct: 11402039 cgacgccggccgcggcctgt 11402058
>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster Length = 109528 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 gcccacgacgccggccgcggcctg 194 ||||||||| |||||||||||||| Sbjct: 28318 gcccacgaccccggccgcggcctg 28295
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 tgtgagggaactttcttgaa 439 |||||||||||||||||||| Sbjct: 628041 tgtgagggaactttcttgaa 628060
>emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encoding rifamycin polyketide synthases, ORFs 1 to 5 Length = 53784 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 gcccacgacgccggccgcggcctg 194 ||||||||| |||||||||||||| Sbjct: 11913 gcccacgaccccggccgcggcctg 11890
>gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 199070 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 gccagcgagctcctctccttccac 362 |||||||||||||||| ||||||| Sbjct: 198701 gccagcgagctcctcttcttccac 198724
>ref|XM_680703.1| PREDICTED: Danio rerio hypothetical protein LOC557611 (LOC557611), partial mRNA Length = 1006 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tcctcttcctcctcggtggc 109 |||||||||||||||||||| Sbjct: 545 tcctcttcctcctcggtggc 526
>gb|AC023425.20| Homo sapiens 12 BAC RP11-350G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181829 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 cagtggaggcaagaagttgt 420 |||||||||||||||||||| Sbjct: 78378 cagtggaggcaagaagttgt 78359
>gb|AC012673.37| Homo sapiens 12 BAC RP11-431G15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 47302 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 gccagcgagctcctctccttccac 362 |||||||||||||||| ||||||| Sbjct: 45671 gccagcgagctcctcttcttccac 45648
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cccgcccacgccagcgagct 349 |||||||||||||||||||| Sbjct: 755548 cccgcccacgccagcgagct 755567
>ref|XM_396659.2| PREDICTED: Apis mellifera similar to GA13338-PA (LOC413210), mRNA Length = 5274 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ctcctcttcctcctcggtgg 108 |||||||||||||||||||| Sbjct: 1320 ctcctcttcctcctcggtgg 1339
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 cgacgccggccgcggcctgt 195 |||||||||||||||||||| Sbjct: 11398802 cgacgccggccgcggcctgt 11398821
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 cgacgccggccgcggcctgt 195 |||||||||||||||||||| Sbjct: 110336 cgacgccggccgcggcctgt 110355
>ref|NM_053996.1| Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 (Slc6a7), mRNA Length = 2722 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 atggactcctcttcctcctc 103 |||||||||||||||||||| Sbjct: 1991 atggactcctcttcctcctc 1972
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 ccgaccgcgtccgcaacatg 272 |||||||||||||||||||| Sbjct: 2210250 ccgaccgcgtccgcaacatg 2210269
>emb|BX470151.16| Mouse DNA sequence from clone RP23-354H23 on chromosome 4, complete sequence Length = 59157 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 caagaagttgtgtgagggaacttt 433 ||||||||| |||||||||||||| Sbjct: 36000 caagaagttatgtgagggaacttt 36023
>emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris complete rubradirin gene cluster, strain NRRL 3061 Length = 105657 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 gcccacgacgccggccgcggcctg 194 |||| ||||||||||||||||||| Sbjct: 14326 gcccgcgacgccggccgcggcctg 14349
>gb|M88111.1|RATLPTHA Rattus norvegicus high affinity L-proline transporter mRNA, complete cds Length = 2722 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 atggactcctcttcctcctc 103 |||||||||||||||||||| Sbjct: 1991 atggactcctcttcctcctc 1972 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,476,797 Number of Sequences: 3902068 Number of extensions: 3476797 Number of successful extensions: 134382 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133441 Number of HSP's gapped (non-prelim): 941 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
