ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast74h08 |
|---|---|
| Clone Library Name | barley_pub |
>RECN_STRCO (Q9S220) DNA repair protein recN (Recombination protein N)| Length = 572 Score = 32.0 bits (71), Expect = 0.61 Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +2 Query: 122 DEMGADAAGGTPCRAADLVVRQSATGRVVEGKPEYAVELTNRCR-CAQSRVLLRCYGLSS 298 D DA G + A+ R A R +E E+T R R AQ LLR YGL Sbjct: 144 DRYAGDAVAGPLAKYAEAYRRLRAVVRELE-------EITTRARERAQEADLLR-YGLDE 195 Query: 299 VEAVDPRAIRPVD 337 + AV+PRA V+ Sbjct: 196 IAAVEPRAGEDVE 208
>AN36_HELPJ (Q9ZJD1) 36 kDa antigen| Length = 329 Score = 30.4 bits (67), Expect = 1.8 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +2 Query: 311 DPRAIRPVDGE--RCLLRGGRLIPSGAPV 391 D +A+ P+DGE LL GG L P G PV Sbjct: 206 DVKALAPIDGEVSNVLLSGGELSPKGFPV 234
>RNH2_XANOM (Q2P4B9) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 246 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -3 Query: 382 AARDQPAAPEQAALSVNRPDRPRVHGLDAAEAVAAEQHPGLRA 254 A R A P A V P++PR++GLD ++ + AE+ L A Sbjct: 43 AGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYA 85
>RNH2_XANOR (Q5H1F4) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 252 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -3 Query: 382 AARDQPAAPEQAALSVNRPDRPRVHGLDAAEAVAAEQHPGLRA 254 A R A P A V P++PR++GLD ++ + AE+ L A Sbjct: 49 AGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYA 91
>RNH2_XANAC (Q8PML9) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 244 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 382 AARDQPAAPEQAALSVNRPDRPRVHGLDAAEAVAAEQHPGLRA 254 A R A P A V P +PR++GLD ++ + AE+ L A Sbjct: 39 AGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYA 81
>RNH2_XANCP (Q8PAW7) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 240 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -3 Query: 382 AARDQPAAPEQAALSVNRPDRPRVHGLDAAEAVAAEQHPGLRA 254 A R A P A V P +PR++GLD ++ ++AE+ L A Sbjct: 39 AGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYA 81
>RNH2_XANC8 (Q4USP6) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 240 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -3 Query: 382 AARDQPAAPEQAALSVNRPDRPRVHGLDAAEAVAAEQHPGLRA 254 A R A P A V P +PR++GLD ++ ++AE+ L A Sbjct: 39 AGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYA 81
>AN36_HELPY (P94851) 36 kDa antigen| Length = 329 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +2 Query: 311 DPRAIRPVDGE--RCLLRGGRLIPSGAPV 391 D +A P+DGE LL GG L P G PV Sbjct: 206 DVKATAPIDGEVSNVLLSGGELSPKGFPV 234
>IF2_STIAU (P55875) Translation initiation factor IF-2| Length = 1054 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -3 Query: 373 DQPAAPEQAALSVNRPDRPRVHGLDAAEAVAAEQHP 266 D P QAA V+ P VH AEA A+E+ P Sbjct: 89 DASQEPSQAASDVSSPPSEPVHEASGAEAAASERVP 124
>PHOP1_HUMAN (Q8TCT1) Phosphoethanolamine/phosphocholine phosphatase (EC| 3.1.3.75) Length = 267 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 329 PVDGERCLLRGGRLIPSGAP 388 PV G RCL R GR+ GAP Sbjct: 6 PVSGLRCLSRDGRMAAQGAP 25
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +3 Query: 3 PRKPPRPS*LAATASRESSWRAKPSCTSRCYCYSVVPPKATRWEP 137 P+ PP P+ AT + S + PS T+ YS+V PKA R P Sbjct: 1135 PKGPPAPA--TATPAPTSPF---PSATAGSMTYSLVAPKAQRPSP 1174
>MRAW_FUSNN (Q8R6F5) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 314 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = +2 Query: 173 LVVRQSATGRVVEGKPEYAVELTNRCRCAQSRVLLRCYGLSSVEAVDPRAIRPVDGE 343 ++ S R+V+ K + +L C+C + + C G+ E + + I P+D E Sbjct: 241 IITFHSLEDRIVKNKFK---DLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDE 294
>M6PBP_PONPY (Q5RAV8) Mannose-6-phosphate receptor-binding protein 1| Length = 434 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = -1 Query: 330 GRIARGSTASTLLRP*QRSSTLDCAHRQRLVSST---AYSGFPSTTRPVADCRTTRSAAR 160 G A GST T+ P Q+ S +D L+SST + + ST +T AA Sbjct: 5 GAEADGSTQVTVEEPVQQPSVVDRVASMPLISSTCDMVSAAYASTKESYPHVKTVCDAAE 64 Query: 159 HGV 151 GV Sbjct: 65 KGV 67
>M6PBP_HUMAN (O60664) Mannose-6-phosphate receptor-binding protein 1 (Cargo| selection protein TIP47) (47 kDa mannose 6-phosphate receptor-binding protein) (47 kDa MPR-binding protein) (Placental protein 17) (PP17) Length = 434 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = -1 Query: 330 GRIARGSTASTLLRP*QRSSTLDCAHRQRLVSST---AYSGFPSTTRPVADCRTTRSAAR 160 G A GST T+ P Q+ S +D L+SST + + ST +T AA Sbjct: 5 GAEADGSTQVTVEEPVQQPSVVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAE 64 Query: 159 HGV 151 GV Sbjct: 65 KGV 67
>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1615 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/51 (37%), Positives = 22/51 (43%) Frame = -3 Query: 418 RRHPGVLEPHRRAARDQPAAPEQAALSVNRPDRPRVHGLDAAEAVAAEQHP 266 RRH V PH AA AAP +A P RV ++ A AA P Sbjct: 410 RRHSDVALPHTEAA---AAAPAEATAGKRAPATARVSPPESPRARAAAAQP 457 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,349,632 Number of Sequences: 219361 Number of extensions: 663166 Number of successful extensions: 2405 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2405 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
