>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
            (Trithorax homolog 2)
          Length = 2715

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +1

Query: 16   PALPRLRVALSSKASTLFPQSFRSPLPSSVSFLAFLAPGRNFRHSHATLA-----PLPIP 180
            P  P     + +    L P S  +P P+  SF        N+  S   L      PLP P
Sbjct: 1829 PGAPERHSPIQNLDPPLRPDSGSAPPPAPRSFSGARIKVPNYSPSRRPLGGVSFGPLPSP 1888

Query: 181  FSPSCWCHHGIDRIGNP----RPRRNR 249
             SPS   HH I  +G+P     PRR+R
Sbjct: 1889 GSPSSLTHH-IPTVGDPDFPAPPRRSR 1914

>YM60_YEAST (Q03649) Hypothetical UPF0017 protein YMR210w|
          Length = 449

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 271 AIPYCRFLKLFHSALRFILPSPALSRMSPVRPNLESIPASLR 396
           A P CRFLK+FH  +      P L  +    PN E I  + R
Sbjct: 406 AEPLCRFLKIFHDEITVKGLKPDLENVQLPDPNCEPIATTFR 447

>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +3

Query: 165 PPPYPFLPELLVSPRDRSDRKSQAEKKPCLVFGFVRNPLLPFFEALSLRPPIYTPFAGIV 344
           PPP P  P  +++P   S +  Q    P   F     P LP   +    PP  TP AG+ 
Sbjct: 159 PPPPPTGPRSILNPPTPSQQHQQQHHHPN-PFVAASAPSLPPPPSSLQAPPAITPIAGLS 217

Query: 345 PDVPCS 362
              P S
Sbjct: 218 APAPAS 223

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 296 SSFTPPSDLYSLRRHCPGCPLFDRISSRFPPPFG-SXNLGASPGPDSQP 439
           +S +PPSD           PLF    +  PPP   S NL A PGP SQP
Sbjct: 250 ASSSPPSDP----------PLFHCSDALTPPPLPPSNNLPAHPGPASQP 288

>COLL1_MIMIV (Q5UPE4) Collagen-like protein 1|
          Length = 945

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 33/137 (24%), Positives = 52/137 (37%)
 Frame = -3

Query: 425 DQGKLRDXPIRREAGIDSRFGRTGDIRDNAGEGSINRRAE*KSFKKRQ*GIAHETEN*TR 246
           D+G + D   + + G     G  GDI D   +G I  + + K  K        + EN + 
Sbjct: 393 DKGDIGDKGDKGDVGDKGDKGDKGDIGDKGDKGDIGDKGD-KGDK------GDKGENGSG 445

Query: 245 FLLGLGFPIRSIPW*HQQLGEKGIGRGARVACECRKFLPGAKKARNETEEGRGDRKDWGK 66
            L GLG P          LGE G      +     + + G        +  +GD+ D G 
Sbjct: 446 ILFGLGIP-------SPDLGEDGDIYIDTLTGNVYQKIGGVWVLETSIKGEKGDKGDTGD 498

Query: 65  RVDAFELRATRSRGNAG 15
           + D  +   T  +G+ G
Sbjct: 499 KGDTGDKGDTGDKGDTG 515

>GTSE1_MOUSE (Q8R080) G2 and S phase expressed protein 1 (Gtse-1) (B99 protein)|
          Length = 741

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +2

Query: 371 SSRFPPPFGSXNLGASPGPDSQPVATG 451
           SSR  PP G   L ASPG  S PV+ G
Sbjct: 152 SSRVQPPMGEPQLLASPGLLSSPVSAG 178

>US420_GAHVG (Q05103) Hypothetical 15.5 kDa protein|
          Length = 140

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 279 LLPFFEALSLRPPIYTPFAGIVPDVPC 359
           LL + EAL L  P+     GIV DVPC
Sbjct: 94  LLEYCEALYLPQPVKMEIVGIVDDVPC 120

>Y2670_MYCBO (P63912) Hypothetical protein Mb2670|
          Length = 218

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 YSLRRHCPGCPLFDRISSRFPPPFG 397
           YS+ R   G PLFDR+  RFP  FG
Sbjct: 73  YSIGRRF-GLPLFDRLGRRFPKHFG 96

>Y2637_MYCTU (P63911) Hypothetical protein Rv2637/MT2715|
          Length = 218

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 YSLRRHCPGCPLFDRISSRFPPPFG 397
           YS+ R   G PLFDR+  RFP  FG
Sbjct: 73  YSIGRRF-GLPLFDRLGRRFPKHFG 96

>ZN619_HUMAN (Q8N2I2) Zinc finger protein 619|
          Length = 560

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 70  PQSFRSPLPSSVSFLAFLAPGRNFRHSHATLAPLPIPF 183
           P +  SPLP   +  A   PG     SHA + P  +PF
Sbjct: 481 PCAILSPLPPQHTCSALAPPGPPLSSSHAVVLPPSVPF 518

>DYN2_HUMAN (P50570) Dynamin-2 (EC 3.6.5.5)|
          Length = 870

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +2

Query: 308 PPSD---LYSLRRHCPGCPLFDRISSRFPPPFGSXNLGASPGPDSQPVATGDL*SFVSSP 478
           PP D   L S   H P  P    +SS  PP       G +PGP   PV  G   SF + P
Sbjct: 750 PPVDDTWLQSASSHSP-TPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPP 808

Query: 479 V 481
           +
Sbjct: 809 I 809

>GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 347 GCPLFDRISSRFPPPFGSXNLGASPGPDSQPVATGDL*SFVSSPVV 484
           G PL D +S   PPP+G   L +S G   +  AT        SP+V
Sbjct: 149 GGPLIDLLSED-PPPYGGQGLSSSDGDGDREEATSTSEIPAPSPIV 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,065,941
Number of Sequences: 219361
Number of extensions: 1676855
Number of successful extensions: 4859
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4857
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)