ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast74h03 |
|---|---|
| Clone Library Name | barley_pub |
>RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 199 Score = 85.5 bits (210), Expect = 6e-17 Identities = 44/92 (47%), Positives = 59/92 (64%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K +KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ SK+SK Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-RSKNSK-V 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPDE 388 +VS+TVEGPP P+E Sbjct: 59 PEREEKRVLGFVLLRGENIVSLTVEGPPPPEE 90
>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 231 Score = 82.8 bits (203), Expect = 4e-16 Identities = 43/91 (47%), Positives = 54/91 (59%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPD 385 +VSMTVEGPP D Sbjct: 59 AEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and| B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB') Length = 240 Score = 82.8 bits (203), Expect = 4e-16 Identities = 43/91 (47%), Positives = 54/91 (59%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPD 385 +VSMTVEGPP D Sbjct: 59 AEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 82.8 bits (203), Expect = 4e-16 Identities = 43/91 (47%), Positives = 54/91 (59%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPD 385 +VSMTVEGPP D Sbjct: 59 AEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 82.4 bits (202), Expect = 5e-16 Identities = 43/91 (47%), Positives = 54/91 (59%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPD 385 +VSMTVEGPP D Sbjct: 59 PEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) Length = 240 Score = 80.9 bits (198), Expect = 1e-15 Identities = 42/91 (46%), Positives = 54/91 (59%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P + + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPD 385 +VSMTVEGPP D Sbjct: 59 PEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 80.9 bits (198), Expect = 1e-15 Identities = 42/91 (46%), Positives = 54/91 (59%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P + + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPD 385 +VSMTVEGPP D Sbjct: 59 PEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 80.9 bits (198), Expect = 1e-15 Identities = 42/91 (46%), Positives = 54/91 (59%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P + + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPD 385 +VSMTVEGPP D Sbjct: 59 PEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 79.3 bits (194), Expect = 4e-15 Identities = 42/91 (46%), Positives = 53/91 (58%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K SKMLQ ++ RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPD 385 +VSMTVEGPP D Sbjct: 59 AEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>RSMB_CAEEL (P91918) Probable small nuclear ribonucleoprotein associated| protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 160 Score = 75.1 bits (183), Expect = 8e-14 Identities = 36/92 (39%), Positives = 53/92 (57%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 292 M+ K +KM+ +NYRM++ +QDGR +G F AFD+HMN++L +CEE R++ P K Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKK-- 58 Query: 293 XXXXXXXXXXXXXXXXXXVVSMTVEGPPXPDE 388 +VSMTV+GPP D+ Sbjct: 59 TDGEEKRILGLVLVRGEHIVSMTVDGPPPRDD 90
>RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) (Fragment) Length = 214 Score = 61.2 bits (147), Expect = 1e-09 Identities = 31/72 (43%), Positives = 41/72 (56%) Frame = +2 Query: 170 TIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXXXXXXXXXXXXXXXXXXXXV 349 ++Q+GR +G F AFD+HMNL+L DC+EFRK+ P S + + Sbjct: 3 SLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--AEREEKRVLGLVLLRGENL 60 Query: 350 VSMTVEGPPXPD 385 VSMTVEGPP D Sbjct: 61 VSMTVEGPPPKD 72
>YAU8_SCHPO (Q10163) Hypothetical protein C26A3.08 in chromosome I| Length = 147 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/85 (34%), Positives = 46/85 (54%) Frame = +2 Query: 131 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXXXXXXXX 310 +KM+ +N+ + VT +DGR VG+ +AFD MNLVL DC+E+R + ++ Sbjct: 4 TKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHI-KKQNVPSNSVYEEK 62 Query: 311 XXXXXXXXXXXXVVSMTVEGPPXPD 385 +VS++V+GPP D Sbjct: 63 RMLGLVILRGEFIVSLSVQGPPPMD 87
>RSMB_YEAST (P40018) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 196 Score = 57.0 bits (136), Expect = 2e-08 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 7/59 (11%) Frame = +2 Query: 131 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPPSKSSK 286 S++ ++Y++RV QDGR +G+ MAFD+HMNLVL +C E R KL P K SK Sbjct: 10 SRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSK 68
>IF2_DESPS (Q6AJY4) Translation initiation factor IF-2| Length = 939 Score = 36.6 bits (83), Expect = 0.031 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Frame = +1 Query: 151 QLPDARDHPGRP---PTRGEVHGLRSPHEPRPRRLRGVPQAPALKI--FQD---HRRARG 306 +LP R+ P RP PTR V+ P P P R G P PA QD +R+ +G Sbjct: 240 ELPIQREEPSRPRRKPTRPPVNRSPRPSTPSPNRSAGGPPKPAAPATPAQDDSRNRKKKG 299 Query: 307 AEDARPA 327 D +PA Sbjct: 300 RRDEKPA 306
>RUXX_AERPE (Q9YEQ5) Putative snRNP Sm-like protein| Length = 77 Score = 36.6 bits (83), Expect = 0.031 Identities = 14/39 (35%), Positives = 26/39 (66%) Frame = +2 Query: 137 MLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 ML +V+ + V ++ G ++ G +D+H+N++LGD EE Sbjct: 13 MLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE 51
>LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 36.6 bits (83), Expect = 0.031 Identities = 14/32 (43%), Positives = 25/32 (78%) Frame = +2 Query: 158 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 R+ V +++ R+L G+ A+D+H+N++LGD EE Sbjct: 27 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58
>LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 36.6 bits (83), Expect = 0.031 Identities = 14/32 (43%), Positives = 25/32 (78%) Frame = +2 Query: 158 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 R+ V +++ R+L G+ A+D+H+N++LGD EE Sbjct: 27 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58
>LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)| Length = 172 Score = 35.0 bits (79), Expect = 0.090 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = +2 Query: 149 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 V+ ++ V ++DGR L G FD++ NL+L DC E Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE 84
>LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein LSm3| Length = 93 Score = 35.0 bits (79), Expect = 0.090 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +2 Query: 167 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 V ++ R+L G+ A+D H+N+VLGD EE Sbjct: 24 VKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 33.5 bits (75), Expect = 0.26 Identities = 29/85 (34%), Positives = 32/85 (37%) Frame = +1 Query: 115 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 294 VEP+G+ P Q P PG H LR P PR L P+ P L Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPML------- 392 Query: 295 RARGAEDARPAPSPWRGGRLHDRRG 369 D R P RGGR D RG Sbjct: 393 ------DQRGPPLDGRGGR--DPRG 409
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 33.5 bits (75), Expect = 0.26 Identities = 29/85 (34%), Positives = 32/85 (37%) Frame = +1 Query: 115 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 294 VEP+G+ P Q P PG H LR P PR L P+ P L Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPML------- 392 Query: 295 RARGAEDARPAPSPWRGGRLHDRRG 369 D R P RGGR D RG Sbjct: 393 ------DQRGPPLDGRGGR--DPRG 409
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 33.1 bits (74), Expect = 0.34 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Frame = +1 Query: 148 RQLPDARDHPGR---PPTRGEVHGLRSPHEPRPRRLRGVP---QAPALKIFQDHRRARGA 309 R LP +RD P + P G H RSP RPR+ P ++P L +D + Sbjct: 630 RDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSPDRSPELSSSRDRYNSDND 689 Query: 310 EDAR---PAPSPWRGGRLHDRRG 369 +R PSP + DRRG Sbjct: 690 RSSRLLLERPSP-----IRDRRG 707
>LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8| Length = 95 Score = 33.1 bits (74), Expect = 0.34 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +2 Query: 131 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 S + ++N + V DGR +VG FD+ +NL+L + E Sbjct: 2 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 42
>LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8| Length = 95 Score = 33.1 bits (74), Expect = 0.34 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +2 Query: 131 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 S + ++N + V DGR +VG FD+ +NL+L + E Sbjct: 2 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 42
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 33.1 bits (74), Expect = 0.34 Identities = 24/79 (30%), Positives = 31/79 (39%) Frame = +1 Query: 115 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 294 VEP+G+ P + P H R P ++ G P PR L G P+ P + Sbjct: 360 VEPRGYMGPPHQGPPMHHGHDNRGPASHDMRG--GPLAADPRMLIGEPRGPMI------- 410 Query: 295 RARGAEDARPAPSPWRGGR 351 D R P RGGR Sbjct: 411 ------DQRGLPMDGRGGR 423
>SMD2_CAEEL (Q18786) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 118 Score = 33.1 bits (74), Expect = 0.34 Identities = 12/34 (35%), Positives = 25/34 (73%) Frame = +2 Query: 152 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 N+++ + ++ ++L+G+ AFDRH N+VL + +E Sbjct: 39 NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 72
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 32.7 bits (73), Expect = 0.45 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Frame = +1 Query: 148 RQLPDARDHPGR-----PPTRGEVHGL-RSPHEPRPRRLRGVPQAPALKIFQDHRRARGA 309 R L +D GR PP RG R+P R R R ++ + + + R R Sbjct: 736 RSLTPRKDTRGRSLSRTPPRRGRGRSYSRTPSRSRSRS-RSYSRSVSKSVSRSPPRRRAV 794 Query: 310 EDARPAPSPWRGGRLHDR--RGPAXAR 384 E P+P P GR +DR R P+ +R Sbjct: 795 ESRSPSPPPRGRGRSYDRYSRSPSRSR 821 Score = 29.6 bits (65), Expect = 3.8 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%) Frame = +1 Query: 139 APVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR---GA 309 APV A G+ G RSPH P +RLR + + R G Sbjct: 865 APVSNNDRAAAASGKRRREGSYSASRSPHPPPQQRLRRGSYSRSRSRSPIPIRGNGPAGR 924 Query: 310 EDARPAPSPWRGGR 351 + R P+P RGGR Sbjct: 925 DTGRAGPAPARGGR 938
>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor| Length = 347 Score = 32.7 bits (73), Expect = 0.45 Identities = 20/70 (28%), Positives = 28/70 (40%) Frame = +1 Query: 175 PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRL 354 PG P P RP+ PQ P + R + + RPAP+P G + Sbjct: 265 PGSTPLNPAASQPPPPPSHRPQAPGHRPQVPGHRPLPPGHRVQHQQQKRPAPTP--GTQA 322 Query: 355 HDRRGPAXAR 384 H ++GP R Sbjct: 323 HQQKGPPLPR 332
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 32.7 bits (73), Expect = 0.45 Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Frame = +1 Query: 163 ARDHPGRPP-TRGEVHGLRSPHEPRPRRL-----RGVPQAPALKIFQDHRRARGAEDARP 324 A PG P T G G+ P PRP G P P + G +D P Sbjct: 210 AGPRPGNNPFTSGGSTGMARPQAPRPGGAPRPGGAGAPGGP-------RPQGAGGQDRAP 262 Query: 325 APSPWRGGRLHDRRGPAXAR*VPG 396 P GG + GP AR PG Sbjct: 263 RPQGGPGGAPRPQGGPGGARPTPG 286
>SMD2_MOUSE (P62317) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 32.7 bits (73), Expect = 0.45 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = +2 Query: 152 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSK 286 N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P S K Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84
>SMD2_HUMAN (P62316) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 32.7 bits (73), Expect = 0.45 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = +2 Query: 152 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSK 286 N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P S K Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 32.3 bits (72), Expect = 0.58 Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 12/106 (11%) Frame = +1 Query: 124 QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 270 Q F P +P PG P P RG P +P R +RG P P Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699 Query: 271 LKIFQDHRRARGAEDARPAPSPWRGGR-LHDRRGPAXAR*VPGQGL 405 + R RG + P P P+RG R GP R PG G+ Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGM 745
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 32.3 bits (72), Expect = 0.58 Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 12/106 (11%) Frame = +1 Query: 124 QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 270 Q F P +P PG P P RG P +P R +RG P P Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699 Query: 271 LKIFQDHRRARGAEDARPAPSPWRGGR-LHDRRGPAXAR*VPGQGL 405 + R RG + P P P+RG R GP R PG G+ Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGM 745
>SMD2_DROME (Q9VI10) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 119 Score = 32.3 bits (72), Expect = 0.58 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = +2 Query: 152 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSK 286 N ++ + ++ ++L+G+ AFDRH N+VL + +E + +LP + K Sbjct: 38 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGK 83
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 32.3 bits (72), Expect = 0.58 Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 19/112 (16%) Frame = +1 Query: 121 PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRR------------------- 243 P+GF P PG P +GE GL P PR + Sbjct: 274 PRGFPGTP-----GVAGQPGLPGMKGE-KGLSGPAGPRGKEGRPGLPGPPGFKGDRGLDG 327 Query: 244 LRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRLHDRRGPAXAR*VPGQ 399 L GVP P K GA+ AR P P GG D GP +PG+ Sbjct: 328 LPGVPGLPGQKGEAGFPGRDGAKGARGPPGPPGGGEFSD--GPPGPPGLPGR 377
>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (EB11) Length = 1336 Score = 32.3 bits (72), Expect = 0.58 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 4/76 (5%) Frame = +1 Query: 166 RDHPGRPPTRGEVHGLRSPHEPRPRRLRG----VPQAPALKIFQDHRRARGAEDARPAPS 333 R HP RP +PH R RR G P AP + +D A AR Sbjct: 1230 RSHPHRPRASHRTPAAAAPHHHRHRRAAGGWDLPPPAPTSRSLEDLSSCPRAAPARRLTG 1289 Query: 334 PWRGGRLHDRRGPAXA 381 P R H RR P A Sbjct: 1290 PSR----HARRCPHAA 1301
>AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 807 Score = 32.3 bits (72), Expect = 0.58 Identities = 19/47 (40%), Positives = 21/47 (44%) Frame = +1 Query: 193 RGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPS 333 RG R P PRPRRLR PQ P HR A+ A P+ Sbjct: 297 RGGRRTARRPPRPRPRRLRAAPQGPG----AGHRLAQRGRPAFALPA 339
>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)| Length = 89 Score = 32.3 bits (72), Expect = 0.58 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 158 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 R+ + ++ R LVG AFD H N+VL D E Sbjct: 15 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 32.0 bits (71), Expect = 0.76 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Frame = +1 Query: 184 PPTRGEVHGLRSPHEP-RPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGR-LH 357 PP RG P +P R +RG P P + R RG + P P P+RG R Sbjct: 674 PPPRGGDPFWDGPGDPMRGGPMRGGP-GPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR 732 Query: 358 DRRGPAXAR*VPGQGL 405 GP R PG G+ Sbjct: 733 SGGGPPNGRGGPGGGM 748
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.0 bits (71), Expect = 0.76 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 5/86 (5%) Frame = +1 Query: 133 ENAPVRQLPDARDHPGRPP----TRGEVHGLRSP-HEPRPRRLRGVPQAPALKIFQDHRR 297 +N P+ QLP+ + P PP T E G+R P P PRR P P + + Sbjct: 309 QNRPLPQLPNRNNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRGPAPPPPPHRHVTSNTLN 368 Query: 298 ARGAEDARPAPSPWRGGRLHDRRGPA 375 + G P + RRGPA Sbjct: 369 SAGGNSLLPQAT--------GRRGPA 386
>RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)| (Sm-G) (SmG) Length = 76 Score = 32.0 bits (71), Expect = 0.76 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 MS ++ +F++ ++ + + GR + G FD MNLV+ +C E Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)| (Sm-G) (SmG) Length = 76 Score = 32.0 bits (71), Expect = 0.76 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 MS ++ +F++ ++ + + GR + G FD MNLV+ +C E Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8| Length = 94 Score = 32.0 bits (71), Expect = 0.76 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +2 Query: 137 MLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 + F+ R++V DGR ++G FD NL+L D E Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 32.0 bits (71), Expect = 0.76 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +2 Query: 149 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 277 + R+ + ++ +++VG + FD +N+VL D EF P + Sbjct: 21 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 63
>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 32.0 bits (71), Expect = 0.76 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +2 Query: 149 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 277 + R+ + ++ +++VG + FD +N+VL D EF P + Sbjct: 21 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 63
>RUXX_METTH (O26745) Putative snRNP Sm-like protein| Length = 81 Score = 31.2 bits (69), Expect = 1.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 149 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 +N + + ++ R+ G +FD HMNLVL D EE Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE 56
>MAK31_YEAST (P23059) Protein MAK31 (Maintenance of killer protein 31)| Length = 88 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 134 KMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 K+ F+ + V++ + R LVG +A D MNL+L EE Sbjct: 5 KLSDFIGNTLIVSLTEDRILVGSLVAVDAQMNLLLDHVEE 44
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Frame = +1 Query: 121 PQGFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRR 297 P+G P + D PGRP RG P P+ RG+P L + HR Sbjct: 208 PRGPAGPPGKNGDDGEAGKPGRPGQRGP---------PGPQGARGLPGTAGLPGMKGHRG 258 Query: 298 ARGAEDARPAPSP 336 G + A+ P P Sbjct: 259 FSGLDGAKGQPGP 271
>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein| Length = 72 Score = 30.8 bits (68), Expect = 1.7 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 167 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRK 262 V ++ R+ G+ +D HMNLVL + EE R+ Sbjct: 19 VRLKGAREFRGELKGYDIHMNLVLDNAEELRE 50
>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)| Length = 681 Score = 30.4 bits (67), Expect = 2.2 Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 34/107 (31%) Frame = +1 Query: 118 EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSP----------------HEPRPRRLR 249 +P G + P++R HP R P RG++ R P H P RR Sbjct: 176 QPAGEPATQEQPTPESR-HPARAPARGDMEDRRPPGQKPGPDLTSAPGRGSHGPPTRRAS 234 Query: 250 GVPQAPALKIFQ--DH----------------RRARGAEDARPAPSP 336 + A + + DH RRA + ARPAP+P Sbjct: 235 EARMSTAARDSEGWDHAHGGGTGDTSRSPAGLRRANSVQAARPAPAP 281
>YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II| Length = 140 Score = 30.4 bits (67), Expect = 2.2 Identities = 11/34 (32%), Positives = 25/34 (73%) Frame = +2 Query: 137 MLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVL 238 ++ +V+ ++ V ++DG++L+G +FD+ NL+L Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLML 49
>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein| Length = 72 Score = 30.4 bits (67), Expect = 2.2 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 167 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 259 V ++ R+ G+ +D HMNLVL + EE R Sbjct: 19 VRLKGAREFRGELKGYDIHMNLVLDNAEELR 49
>RUXX_ARCFU (O29386) Putative snRNP Sm-like protein| Length = 77 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +2 Query: 167 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 259 V ++ GR+ G +D HMNLVL D EE + Sbjct: 19 VRLKGGREFRGTLDGYDIHMNLVLLDAEEIQ 49
>RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 76 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +2 Query: 113 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 MS ++ ++++ RM + + GR + G FD MN+VL D E Sbjct: 1 MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE 47
>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)| Length = 1386 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = +1 Query: 121 PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRP 237 P G AP L D+ HP R P+ E G P P P Sbjct: 951 PMGLGPAPYSWLADSWPHPSRSPSAQEPRGSCCPSNPDP 989
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 30.4 bits (67), Expect = 2.2 Identities = 22/76 (28%), Positives = 30/76 (39%) Frame = +1 Query: 148 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 327 R+ D P PP R RSP P RR ++P+ HRR + P+ Sbjct: 753 RRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSRSPSP---PPHRRRYSDDSRSPS 809 Query: 328 PSPWRGGRLHDRRGPA 375 P P R + R P+ Sbjct: 810 PPPRRRRYSDNSRSPS 825
>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein| p56) (mRNP4) Length = 336 Score = 30.4 bits (67), Expect = 2.2 Identities = 24/76 (31%), Positives = 28/76 (36%) Frame = +1 Query: 139 APVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 318 AP + + D P RPP R R P PRP Q P + +A ED Sbjct: 209 APTSEALASGDDPQRPPPRRFRQRFRRPFRPRP----APQQTP--EGGDGEAKAESGEDP 262 Query: 319 RPAPSPWRGGRLHDRR 366 RP P R RR Sbjct: 263 RPEPQRQRNRPYVQRR 278
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 29.6 bits (65), Expect = 3.8 Identities = 21/53 (39%), Positives = 22/53 (41%) Frame = +1 Query: 178 GRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 336 G PP R G PH RPR P A HRRA G D P P+P Sbjct: 1205 GPPPRRRARCGCPRPHPHRPRASHRAP--AAAPHHHRHRRAAGGWDF-PPPAP 1254
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 29.6 bits (65), Expect = 3.8 Identities = 30/97 (30%), Positives = 37/97 (38%) Frame = +1 Query: 115 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 294 VEP+G+ P Q P PG H +R PR L P+ P + Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHDSRGPPPHEMRGGPLTEPRPLMAEPRGPMI------- 392 Query: 295 RARGAEDARPAPSPWRGGRLHDRRGPAXAR*VPGQGL 405 D R P RGGR D RG AR + +GL Sbjct: 393 ------DQRGPPLDGRGGR--DPRG-IDARAMEARGL 420
>K1543_HUMAN (Q9P1Y5) Protein KIAA1543| Length = 1249 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +1 Query: 121 PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVP 258 P+ +P R++P R PG P++ RSP RP LR P Sbjct: 752 PKAASPSPARRVPATRRSPGPGPSQSP----RSPKHTRPAELRLAP 793
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +1 Query: 127 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 303 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 873 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 926 Query: 304 GAEDARPAPSPWRGG 348 G +P P GG Sbjct: 927 GI-TGKPGPKGNSGG 940
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +1 Query: 127 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 303 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 873 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 926 Query: 304 GAEDARPAPSPWRGG 348 G +P P GG Sbjct: 927 GI-TGKPGPKGNSGG 940
>NAPB_PARPN (Q56351) Diheme cytochrome c napB precursor (Cytochrome c-552)| (Cytochrome c552) Length = 161 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 142 PVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAP 267 P Q+ A D GR RG++ L P RR+R P+ P Sbjct: 33 PAVQIVPALDRLGRADVRGQIPPLGRPITDDVRRMRNYPEQP 74
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/63 (26%), Positives = 27/63 (42%) Frame = +1 Query: 148 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 327 R+ P + P RPP + R+ +PRP P P + + R AR + + P Sbjct: 755 RKRPVSNGRPARPPVTAGLVAARAAGDPRP------PHDPTHPLAESPRPARSSPASSPE 808 Query: 328 PSP 336 +P Sbjct: 809 LTP 811
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +1 Query: 127 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 303 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 871 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 924 Query: 304 GAEDARPAPSPWRGG 348 G +P P GG Sbjct: 925 GI-TGKPGPKGNSGG 938
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +1 Query: 127 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 303 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 871 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 924 Query: 304 GAEDARPAPSPWRGG 348 G +P P GG Sbjct: 925 GI-TGKPGPKGNSGG 938
>FOXD4_HUMAN (Q12950) Forkhead box protein D4 (Forkhead-related protein FKHL9)| (Forkhead-related transcription factor 5) (FREAC-5) (Myeloid factor-alpha) Length = 439 Score = 29.3 bits (64), Expect = 4.9 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = +1 Query: 139 APVRQLPDARDH--PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAE 312 AP + +P A + PGR P + L PH PR L A A K +A GA+ Sbjct: 237 APPQPVPGAYPNTGPGRRP-----YALLHPHPPRYLLLSAPAYAGAPK------KAEGAD 285 Query: 313 DARPAPSP 336 A PAP P Sbjct: 286 LATPAPFP 293
>PROB_PHOLL (Q7N7B2) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 368 Score = 29.3 bits (64), Expect = 4.9 Identities = 20/44 (45%), Positives = 22/44 (50%) Frame = +1 Query: 187 PTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 318 P HGL SP E R R + G P PA +I DH GAE A Sbjct: 251 PVGTRFHGLESPMENRKRWIFGAP--PAGEIIVDH----GAETA 288
>LSM7_MOUSE (Q9CQQ8) U6 snRNA-associated Sm-like protein LSm7| Length = 103 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 143 QFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP 268 ++++ +RV Q GR+ G FD +NLVL E+ + P Sbjct: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDP 58
>SORC2_HUMAN (Q96PQ0) VPS10 domain-containing receptor SorCS2 precursor| Length = 1159 Score = 28.9 bits (63), Expect = 6.4 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = +1 Query: 178 GRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 336 GR P G + PH R R P A + R+ARG E P PSP Sbjct: 50 GRSPEPGRL----GPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSP 98
>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA| topoisomerase III beta-1) Length = 862 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +1 Query: 157 PDARDHPGRPPTRGEVHGLRSPHEPRPRR 243 P R PGR RG G R P +P PRR Sbjct: 821 PMHRGGPGRRQGRGRGRGRRPPGKPNPRR 849
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.9 bits (63), Expect = 6.4 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Frame = +1 Query: 175 PGRPPTRGEVH-----GLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDAR-PAPSP 336 PG+P GE G R P P P+ RG P P L + HR G + A+ A +P Sbjct: 179 PGKPGDDGEAGKPGKAGERGP--PGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP 236 Query: 337 WRGGRL-----HDRRGPAXAR*VPGQ 399 G + GP R +PG+ Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGE 262
>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta| chain 3) (Beta-IV spectrin) Length = 2564 Score = 28.9 bits (63), Expect = 6.4 Identities = 27/86 (31%), Positives = 31/86 (36%) Frame = +1 Query: 145 VRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARP 324 V QL + PG P L P E P RL + P D RAR R Sbjct: 2327 VEQLQEKEAGPGLPAGPS----LPQPRELPPGRLPNGLELPERTPRPDRPRARDRPKPRR 2382 Query: 325 APSPWRGGRLHDRRGPAXAR*VPGQG 402 P P GG + G +R P QG Sbjct: 2383 RPRPREGG---EGGGSRRSRSAPAQG 2405
>K0220_HUMAN (Q92617) Protein KIAA0220 (Fragment)| Length = 884 Score = 28.9 bits (63), Expect = 6.4 Identities = 22/70 (31%), Positives = 27/70 (38%) Frame = +1 Query: 175 PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRL 354 P R P R + P P P+R R P+ K RRA E + P P R G + Sbjct: 801 PSRKPKRRRAADVE-PSSPEPKRRRVGDVEPSRK--PKRRRAADVEPSSPEPKRRRVGDV 857 Query: 355 HDRRGPAXAR 384 R P R Sbjct: 858 EPSRKPKRRR 867
>KLK9_HUMAN (Q9UKQ9) Kallikrein-9 precursor (EC 3.4.21.-) (Kallikrein-like| protein 3) (KLK-L3) Length = 250 Score = 28.9 bits (63), Expect = 6.4 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 295 RARGAEDARPAPSPWRGGRLH 357 RA GAE+ RP PW+ G H Sbjct: 22 RAIGAEECRPNSQPWQAGLFH 42
>RUXE_MOUSE (P62305) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +2 Query: 137 MLQFVNYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 277 + +++ R R+ + Q ++ G + FD +MNLVL D EE S+ Sbjct: 21 IFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 71
>RUXE_HUMAN (P62304) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +2 Query: 137 MLQFVNYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 277 + +++ R R+ + Q ++ G + FD +MNLVL D EE S+ Sbjct: 21 IFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 71
>RUXE_CHICK (P62303) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +2 Query: 137 MLQFVNYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 277 + +++ R R+ + Q ++ G + FD +MNLVL D EE S+ Sbjct: 21 IFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 71
>RUXE_BRARE (Q7ZUG0) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%) Frame = +2 Query: 137 MLQFVNYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEE 253 + +++ R R+++ Q ++ G + FD +MNLVL D EE Sbjct: 21 IFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEE 63
>LSM7_HUMAN (Q9UK45) U6 snRNA-associated Sm-like protein LSm7| Length = 103 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 143 QFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP 268 ++++ +RV Q GR+ G FD +NLVL E+ + P Sbjct: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDP 58
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 28.9 bits (63), Expect = 6.4 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 11/86 (12%) Frame = +1 Query: 175 PGRPPTRGEV-----HGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDAR-PAPSP 336 PG+P GE G R P P P+ RG P P L + HR G + A+ A +P Sbjct: 63 PGKPGDDGEAGKPGKSGERGP--PGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP 120 Query: 337 WRGGRL-----HDRRGPAXAR*VPGQ 399 G GP R +PG+ Sbjct: 121 GVKGESGSPGZBGSPGPMGPRGLPGE 146
>SMD2_YEAST (Q06217) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 110 Score = 28.5 bits (62), Expect = 8.4 Identities = 9/29 (31%), Positives = 21/29 (72%) Frame = +2 Query: 167 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE 253 +++++ +++ + AFDRH N+VL + +E Sbjct: 46 ISLRNNHKIIARVKAFDRHCNMVLENVKE 74
>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 940 Score = 28.5 bits (62), Expect = 8.4 Identities = 33/107 (30%), Positives = 39/107 (36%), Gaps = 13/107 (12%) Frame = +1 Query: 124 QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 270 Q F P +P PG P P RG P +P R +RG P P Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699 Query: 271 LKIFQDHRRARGA-EDARPAPSPWRGGR-LHDRRGPAXAR*VPGQGL 405 + R RG E P P P+RG R GP R PG G+ Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPPFRGARGGRSGGGPPNGRGGPGGGM 746
>LSM1_MOUSE (Q8VC85) U6 snRNA-associated Sm-like protein LSm1| Length = 133 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = +2 Query: 122 PKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVL 238 P + +++ ++ + V ++DGR L+G + D+ NLVL Sbjct: 5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVL 43
>LSM1_HUMAN (O15116) U6 snRNA-associated Sm-like protein LSm1 (Small nuclear| ribonuclear CaSm) (Cancer-associated Sm-like) Length = 133 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = +2 Query: 122 PKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVL 238 P + +++ ++ + V ++DGR L+G + D+ NLVL Sbjct: 5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVL 43
>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)| Length = 439 Score = 28.5 bits (62), Expect = 8.4 Identities = 31/102 (30%), Positives = 34/102 (33%), Gaps = 10/102 (9%) Frame = +1 Query: 127 GFENAPVRQLPDARDHPGRP---PTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRR 297 G E AP + A G P P GE P P G APA Sbjct: 26 GGEPAPAEGVAPAPAEGGAPAPAPAEGEAPAPAEGGAPAPAPAEGAEPAPADGGAPAPAP 85 Query: 298 ARG-------AEDARPAPSPWRGGRLHDRRGPAXAR*VPGQG 402 A G AE PAP+P GG G A A P +G Sbjct: 86 AEGGAPAPAPAEGGAPAPAPAEGGAPAPAEGGAPAP-APAEG 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,717,246 Number of Sequences: 219361 Number of extensions: 751609 Number of successful extensions: 2976 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 2714 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2937 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
