>PTR2_ARATH (P46032) Peptide transporter PTR2 (Histidine-transporting protein)|
          Length = 585

 Score =  174 bits (442), Expect = 8e-44
 Identities = 85/156 (54%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
 Frame = +3

Query: 3   SGIEGSRKLEHTRQFRFLDKAAVETQAD-RTAAAPSPWRLCTVTQVEELKSVVRLLPIWA 179
           S I GSRK+EHT   ++LDKAAV ++ + ++    + WRLCTVTQVEELK ++R+ PIWA
Sbjct: 296 SAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWA 355

Query: 180 SGIVFATVYGQMSTMFVLQGNTLDASMGPKFKIPSASLSIFDTLSVIAWVPVYDRILVPA 359
           SGI+F+ VY QMSTMFV QG  ++  +G  F++P A+L  FDT SVI WVP+YDR +VP 
Sbjct: 356 SGIIFSAVYAQMSTMFVQQGRAMNCKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPL 414

Query: 360 VRSVTGRPRGFTQLQRMGIGLVVSMFAMLAXGVLEL 467
            R  TG  +GFT++QRMGIGL VS+  M A  ++E+
Sbjct: 415 ARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEI 450

>CHL1_ARATH (Q05085) Nitrate/chlorate transporter|
          Length = 590

 Score =  124 bits (312), Expect = 9e-29
 Identities = 66/154 (42%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
 Frame = +3

Query: 9   IEGSRKLEHTRQFRFLDKAAVETQ-ADRTAAAPSPWRLCTVTQVEELKSVVRLLPIWASG 185
           ++G +KL HT QFR LDKAA+  Q A  T+   + W L T+T VEE+K +VR+LPIWA+ 
Sbjct: 290 MKGKQKLPHTEQFRSLDKAAIRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATC 349

Query: 186 IVFATVYGQMSTMFVLQGNTLDASMGPKFKIPSASLSIFDTLSVIAWVPVYDRILVPAVR 365
           I+F TV+ Q++T+ V Q  TLD S+G  F+IP AS+++F    ++    VYDR+ +   +
Sbjct: 350 ILFWTVHAQLTTLSVAQSETLDRSIG-SFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCK 408

Query: 366 SVTGRPRGFTQLQRMGIGLVVSMFAMLAXGVLEL 467
            +   P G   LQR+G+GL     AM    ++EL
Sbjct: 409 KLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVEL 442

>OPT3_CAEEL (O01840) Putative oligopeptide transporter opt-3|
          Length = 701

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 28/111 (25%), Positives = 58/111 (52%)
 Frame = +3

Query: 135 VEELKSVVRLLPIWASGIVFATVYGQMSTMFVLQGNTLDASMGPKFKIPSASLSIFDTLS 314
           ++  + ++ +  I+   I F  ++ Q  + +VLQ   LD  +G  F I    +   + + 
Sbjct: 264 IDSTRGLLNVAVIFCPLIFFWALFDQQGSTWVLQARRLDGRVG-HFSILPEQIHAINPVC 322

Query: 315 VIAWVPVYDRILVPAVRSVTGRPRGFTQLQRMGIGLVVSMFAMLAXGVLEL 467
           V+  VP+++  + PA+R +T      T L++M +G +++ F+    GVL+L
Sbjct: 323 VLILVPIFEGWVYPALRKIT----RVTPLRKMAVGGLLTAFSFAIAGVLQL 369

>PTR2_YEAST (P32901) Peptide transporter PTR2 (Peptide permease PTR2)|
          Length = 601

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 28/110 (25%), Positives = 55/110 (50%)
 Frame = +3

Query: 135 VEELKSVVRLLPIWASGIVFATVYGQMSTMFVLQGNTLDASMGPKFKIPSASLSIFDTLS 314
           V+E+K  +    ++    ++ T YG M + F+ Q     ASM     IP+  L  FD+++
Sbjct: 342 VDEIKRALAACKVFIFYPIYWTQYGTMISSFITQ-----ASMMELHGIPNDFLQAFDSIA 396

Query: 315 VIAWVPVYDRILVPAVRSVTGRPRGFTQLQRMGIGLVVSMFAMLAXGVLE 464
           +I ++P++++ + P +R  T        + ++  G +   FAM    VL+
Sbjct: 397 LIIFIPIFEKFVYPFIRRYT----PLKPITKIFFGFMFGSFAMTWAAVLQ 442

>OPT1_CAEEL (Q17758) Oligopeptide transporter 1 (Di-/tri-peptide transporter|
           CPTA)
          Length = 785

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 24/113 (21%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +3

Query: 135 VEELKSVVRLLPIWASGIVFATVYGQMSTMFVLQGNTLDASMGPKFKIPSASLSIFDTLS 314
           +E++K + R++ +     +F  +Y Q  + +VLQ   +DA +   F+I    + + +   
Sbjct: 294 IEDIKRLFRVIVMMIPVPMFWALYDQQGSTWVLQAVGMDAKVF-GFEILPDQMGVLNAFL 352

Query: 315 VIAWVPVYDRILVPAVRSVTGRPRGF--TQLQRMGIGLVVSMFAMLAXGVLEL 467
           ++ ++P++  I+ P +  +     GF  T L++M  G +++  +    G+++L
Sbjct: 353 ILFFIPIFQSIVYPTIEKL-----GFQMTMLRKMAGGGILTAVSFFVCGIVQL 400

>PTR2_SCHPO (Q9P380) Probable peptide transporter ptr2 (Peptide permease ptr2)|
          Length = 618

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 23/110 (20%), Positives = 51/110 (46%)
 Frame = +3

Query: 135 VEELKSVVRLLPIWASGIVFATVYGQMSTMFVLQGNTLDASMGPKFKIPSASLSIFDTLS 314
           ++ELK  +R    +    ++   YGQM+   + Q   +         + +     FD+++
Sbjct: 350 IDELKRALRACKTFLFYPIYWVCYGQMTNNLISQAGQMQTG-----NVSNDLFQAFDSIA 404

Query: 315 VIAWVPVYDRILVPAVRSVTGRPRGFTQLQRMGIGLVVSMFAMLAXGVLE 464
           +I ++P+ D I+ P +R        F  + R+ +G + +  +M+   VL+
Sbjct: 405 LIIFIPICDNIIYPLLRKYN---IPFKPILRITLGFMFATASMIYAAVLQ 451

>HYPB_RHOCA (P26410) Hydrogenase nickel incorporation protein hypB|
          Length = 335

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = +2

Query: 161 PAAHLGKRHRVRHGVRADEHHVRAPGQHPGRLHGAQVQD 277
           P AH    H   HG  AD  H  A G   G  HGA   D
Sbjct: 63  PHAH-SHSHAAGHGAEADSDHPHAHGHDHGHSHGACAHD 100

>UL56_HHV1E (P36297) Protein UL56|
          Length = 233

 Score = 26.2 bits (56), Expect(2) = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 427 TTRPMPMRWSCVNPRGRP 374
           T +PMP+ W  V P  RP
Sbjct: 143 TPQPMPLSWPFVRPNSRP 160



 Score = 22.3 bits (46), Expect(2) = 3.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 264 APWRRPGCC 238
           AP+RR GCC
Sbjct: 200 APYRREGCC 208

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
 Frame = +2

Query: 11  RGEPQAGAHAAVQVPRXXXXXXXXXXXXXXXVALAAVHGD----AGGGAQERGAPAAHLG 178
           R  P+ GA   V+VP                  LAAVHG     A G  ++R        
Sbjct: 541 RAVPEGGARVKVRVPEPERGALAGH-------VLAAVHGGEHALAVGARRQRDRGPGPGA 593

Query: 179 KRHRVRHGVRADEHHVRAPGQHPGR--LHGAQ 268
             HRV H V A E     PG   G   LH  +
Sbjct: 594 GAHRVAHVVLAAEAQRLGPGVQAGEGGLHAGE 625

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
 Frame = +2

Query: 122 HGDAGGGAQERGAP-----------AAHLGKRHRVRHGVRADEHHVRAPGQHPGRL 256
           H   G G +E G             A+H    HR R G  A+EH    PG H  R+
Sbjct: 554 HAHHGPGGEEEGGEEELTVKAGHHVASHPPPGHRSREG-HAEEHQTEVPGHHQHRM 608

>PTFX1_ECOLI (P77439) Multiphosphoryl transfer protein 1 (MTP 1) [Includes:|
           Phosphoenolpyruvate-protein phosphotransferase (EC
           2.7.3.9) (Phosphotransferase system enzyme I);
           Phosphocarrier protein HPr (Protein H); Fructose-like
           phosphotransferase enzyme I
          Length = 831

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +3

Query: 12  EGSRKLEHTRQFRFLDKAAVE-TQADRTAAAPSPWRLCTVTQVEELKSVVRLLPIWASGI 188
           +  R LE   Q RF+D  +V+ TQA+ T A P P            +S+ RL P    G 
Sbjct: 74  QARRVLEEYIQVRFIDSDSVQPTQAELT-AHPLP------------RSLSRLNPDLLYGN 120

Query: 189 VFATVYGQMSTMFVLQGNTLDA 254
           V A+  G + T+ +LQ ++LD+
Sbjct: 121 VLASGVG-VGTLTLLQSDSLDS 141

>PTFAX_ECO57 (Q8XBQ8) Multiphosphoryl transfer protein (MTP) [Includes:|
           Phosphoenolpyruvate-protein phosphotransferase (EC
           2.7.3.9) (Phosphotransferase system enzyme I);
           Phosphocarrier protein HPr (Protein H); Fructose-like
           phosphotransferase enzyme IIA c
          Length = 831

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +3

Query: 12  EGSRKLEHTRQFRFLDKAAVE-TQADRTAAAPSPWRLCTVTQVEELKSVVRLLPIWASGI 188
           +  R LE   Q RF+D  +V+ TQA+ T A P P            +S+ RL P    G 
Sbjct: 74  QARRVLEEYIQVRFIDSDSVQPTQAELT-AHPLP------------RSLSRLNPDLLYGN 120

Query: 189 VFATVYGQMSTMFVLQGNTLDA 254
           V A+  G + T+ +LQ ++LD+
Sbjct: 121 VLASGVG-VGTLTLLQSDSLDS 141

>SEN34_ASHGO (Q754T3) tRNA-splicing endonuclease subunit SEN34 (EC 3.1.27.9)|
           (tRNA-intron endonuclease SEN34)
          Length = 292

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 27  LEHTRQFRFLDKAAVETQADRTAAAPSPWRLCTVTQVEELKSVVR 161
           L  TR F F DK  V+     TAA    WR  T  ++E+ + + R
Sbjct: 67  LSGTRTFSFDDKLLVQPSGSLTAAEVCRWRQYTKRRLEQQRELRR 111

>PTFAX_ECOL6 (Q8FFD8) Multiphosphoryl transfer protein (MTP) [Includes:|
           Phosphoenolpyruvate-protein phosphotransferase (EC
           2.7.3.9) (Phosphotransferase system enzyme I);
           Phosphocarrier protein HPr (Protein H); Fructose-like
           phosphotransferase enzyme IIA c
          Length = 831

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = +3

Query: 12  EGSRKLEHTRQFRFLDKAAVETQADRTAAAPSPWRLCTVTQVEELKSVVRLLPIWASGIV 191
           +  R LE   Q RF+D  +V+       A P P            +S+ RL P    G V
Sbjct: 74  QARRVLEEYIQVRFIDSDSVQPTLAELTAHPLP------------RSLSRLNPDLLYGNV 121

Query: 192 FATVYGQMSTMFVLQGNTLDA 254
            A+  G + T+ +LQ ++LD+
Sbjct: 122 LASGVG-VGTLTLLQSDSLDS 141

>NCOA2_XENLA (Q9W705) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
           intermediary factor 2) (xTIF2)
          Length = 1516

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 122 HGDAGGGAQERGAPAAHLGKRHRVRHGVRADEHHVRAPGQHPGRLH 259
           HG  G G   +G P + L  RHRV  GV        +P    G LH
Sbjct: 462 HGSPGMG---QGQPNSMLSPRHRVSPGVAGSPRIAPSPFSPAGSLH 504

>OST48_MOUSE (O54734) Dolichyl-diphosphooligosaccharide--protein|
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
           (DDOST 48 kDa subunit)
          Length = 441

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 373 VTERTAGTRMRS*TGTQAMTLRVSKMEREAEGILNLGPMEASRV 242
           V + T G +  S TG   + + +S+   + EG+L +GP+   RV
Sbjct: 258 VQKATPGAQRYSQTGNYELAVALSRWVFKEEGVLRVGPVSHHRV 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,479,267
Number of Sequences: 219361
Number of extensions: 713464
Number of successful extensions: 2886
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2875
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)