ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast74g06 |
|---|---|
| Clone Library Name | barley_pub |
>TR19L_HUMAN (Q969Z4) Tumor necrosis factor receptor superfamily member 19L| precursor (Receptor expressed in lymphoid tissues) Length = 430 Score = 31.6 bits (70), Expect = 0.95 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Frame = -1 Query: 405 CRPCSSGRKSREWSRSASLPPERCSSLTR--ASVSVEARD 292 CRPC G S W S P RCS R A V + RD Sbjct: 48 CRPCPPGTFSAAWGSSPCQPHARCSLWRRLEAQVGMATRD 87
>TR19L_MACFA (Q9N092) Tumor necrosis factor receptor superfamily member 19L| precursor (Receptor expressed in lymphoid tissues) Length = 430 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 405 CRPCSSGRKSREWSRSASLPPERCSSLTRASVSV 304 CRPC G S W S P RCS R V Sbjct: 48 CRPCPPGTFSAAWGSSPCQPHARCSLQRRLEAQV 81
>DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 Query: 38 FIPIPPSHARATTAEPAFTPLHSN 109 + PIPPSH + T +P+ LHSN Sbjct: 295 YSPIPPSHHQLTLPDPSHHGLHSN 318
>DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 Query: 38 FIPIPPSHARATTAEPAFTPLHSN 109 + PIPPSH + T +P+ LHSN Sbjct: 295 YSPIPPSHHQLTLPDPSHHGLHSN 318
>RHAD_SALTI (P69737) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)| Length = 275 Score = 30.0 bits (66), Expect = 2.8 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +2 Query: 290 QSLASTDTDALVKE-EQRSGGKLALRLHSRDFLPEEQGRHESYSSLVLARL 439 Q + +DA +K ++R+GG L LRL D P HE + L++L Sbjct: 11 QGMIKATSDAWLKGWDERNGGNLTLRLDEADIAPFSADFHEKPRYITLSQL 61
>YAMP_RHOCA (P14172) Hypothetical 28.2 kDa protein in ampR 5'region| Length = 260 Score = 29.3 bits (64), Expect = 4.7 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -1 Query: 447 SRR--RRASTREL*LSCRPCSSGRKSREWSRSASLPPERCSSLTRASVSVEARDWW 286 SRR RR+STR++ + PCSS KSR S P E + S S WW Sbjct: 52 SRRPPRRSSTRDI--ASNPCSSTGKSRRPSSVGISPWEVLRNSAVPSRSSSRATWW 105
>RHAD_ECOLI (P32169) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)| Length = 274 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +2 Query: 290 QSLASTDTDALVKE-EQRSGGKLALRLHSRDFLPEEQGRHE 409 Q + TDA +K ++R+GG L LRL D P H+ Sbjct: 11 QGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQ 51
>RHAD_ECOL6 (Q8FBE1) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)| Length = 274 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +2 Query: 290 QSLASTDTDALVKE-EQRSGGKLALRLHSRDFLPEEQGRHE 409 Q + TDA +K ++R+GG L LRL D P H+ Sbjct: 11 QGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQ 51
>CNTN6_MOUSE (Q9JMB8) Contactin-6 precursor (Neural recognition molecule NB-3)| (mNB-3) Length = 1028 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +2 Query: 35 TFIPIPPSHARATTAEPAFTPLHSNHQPTMQ 127 T I +PPS T E P +H PTM+ Sbjct: 500 TIITVPPSKMDVTVGESIVLPCQVSHDPTME 530
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent| helicase brm) (Protein brahma) Length = 1638 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +2 Query: 26 PTPTFIPIPPSHARATTAEPAFTPLHSNHQP 118 P+P P+PP A + A P+ +P S H P Sbjct: 4 PSPANSPMPPPQAPSPMAPPSQSPAPSPHSP 34
>PNRC1_HUMAN (Q12796) Proline-rich nuclear receptor coactivator 1 (Proline-rich| protein 2) (B4-2 protein) Length = 327 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 17 SDGPTPTFIPIPPSHARATTAE 82 SD P+P+ +P PPSH +T E Sbjct: 285 SDPPSPSVLPKPPSHWMGSTVE 306
>RHAD_SALTY (Q8ZKS1) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)| Length = 275 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +2 Query: 290 QSLASTDTDALVKE-EQRSGGKLALRLHSRDFLPEEQGRHESYSSLVLAR 436 Q + +DA +K ++R+GG L LRL D P HE + L++ Sbjct: 11 QGMIKATSDAWLKGWDERNGGNLTLRLDEADIAPFAANFHEKPRYIALSQ 60
>RHAD_SALPA (Q5PKG5) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)| Length = 275 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +2 Query: 290 QSLASTDTDALVKE-EQRSGGKLALRLHSRDFLPEEQGRHESYSSLVLAR 436 Q + +DA +K ++R+GG L LRL D P HE + L++ Sbjct: 11 QGMIKATSDAWLKGWDERNGGNLTLRLDEADIAPFAANFHEKPRYIALSQ 60
>PNRC1_RAT (Q63647) Proline-rich nuclear receptor coactivator 1 (Proline-rich| protein 2) Length = 296 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 17 SDGPTPTFIPIPPSHARATTAE 82 SD P+P+ +P PPSH +T E Sbjct: 254 SDPPSPSVLPKPPSHWMGSTTE 275
>CNTN6_RAT (P97528) Contactin-6 precursor (Neural recognition molecule NB-3)| Length = 1028 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +2 Query: 35 TFIPIPPSHARATTAEPAFTPLHSNHQPTMQ 127 T I +PPS T E P +H PTM+ Sbjct: 500 TVITVPPSKMDVTVGESIVLPCQVSHDPTME 530 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,709,419 Number of Sequences: 219361 Number of extensions: 414313 Number of successful extensions: 1985 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1980 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
