ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast74e02 |
|---|---|
| Clone Library Name | barley_pub |
>NLAL1_ARATH (Q8VZT0) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein 1 Length = 202 Score = 179 bits (453), Expect = 4e-45 Identities = 81/101 (80%), Positives = 95/101 (94%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESY 239 DEGPP+EVVEV+TF+HACEGDAVTKL+ EK+P+F+APIYL+NKTQIGKVDEIFGPINES Sbjct: 51 DEGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESL 110 Query: 240 FSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPKGST 362 FS+KM EG++ATSY+ GDKFFIDP KLLPL+RFLPQPKG + Sbjct: 111 FSIKMMEGIVATSYSPGDKFFIDPYKLLPLARFLPQPKGQS 151
>NLAL2_ARATH (Q9FK53) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein 2 Length = 189 Score = 175 bits (444), Expect = 5e-44 Identities = 81/101 (80%), Positives = 94/101 (93%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESY 239 DEGPP+EVVEV+TFLHACEGDAV KL+N K+P+F+APIYLQNKTQIG+VDEIFGPINES Sbjct: 38 DEGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESL 97 Query: 240 FSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPKGST 362 FS+KM EG++ATSY++GDKFFI P KLLPLSRFLPQPKG + Sbjct: 98 FSIKMREGIVATSYSQGDKFFISPEKLLPLSRFLPQPKGQS 138
>GAR1_CANGA (Q6FSB0) H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein| GAR1) Length = 222 Score = 139 bits (351), Expect = 3e-33 Identities = 62/97 (63%), Positives = 78/97 (80%) Frame = +3 Query: 63 EGPPAEVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESYF 242 +GPP V+E+ F+H CEGD V + N KVPYF+APIYL+NKTQ+GKVDEI GP+NE YF Sbjct: 32 QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYF 91 Query: 243 SVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPK 353 ++K EGV ATS+ EGDKF+I P KLLP+ RF+P+PK Sbjct: 92 TIKCGEGVQATSFKEGDKFYIAPDKLLPIERFIPKPK 128
>GAR1_YEAST (P28007) H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein| GAR1) Length = 205 Score = 135 bits (339), Expect = 7e-32 Identities = 60/97 (61%), Positives = 77/97 (79%) Frame = +3 Query: 63 EGPPAEVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESYF 242 +GPP V+E+ FLH CEGD V + N K+PYF+APIYL+NKTQ+GKVDEI GP+NE +F Sbjct: 31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 90 Query: 243 SVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPK 353 ++K +GV ATS+ EGDKF+I KLLP+ RFLP+PK Sbjct: 91 TIKCGDGVQATSFKEGDKFYIAADKLLPIERFLPKPK 127
>GAR1_ASHGO (Q757V8) H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein| GAR1) Length = 212 Score = 133 bits (334), Expect = 3e-31 Identities = 57/97 (58%), Positives = 77/97 (79%) Frame = +3 Query: 63 EGPPAEVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESYF 242 +GPP VVE+ F+H CEGD V + N K+PYF+A IYL+NKT++GKVDEI GP+NE +F Sbjct: 32 QGPPDSVVEMGAFMHDCEGDIVCRSINTKIPYFNAMIYLENKTEVGKVDEILGPLNEVFF 91 Query: 243 SVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPK 353 ++K EGV A+S+ +GDKF+I P KLLP+ RF+P+PK Sbjct: 92 TIKCAEGVKASSFKDGDKFYISPEKLLPIERFIPKPK 128
>GAR1_SCHPO (Q06975) H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein| GAR1) Length = 194 Score = 130 bits (326), Expect = 2e-30 Identities = 54/96 (56%), Positives = 78/96 (81%) Frame = +3 Query: 66 GPPAEVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESYFS 245 GPP +V+E+ F+H CEG+ V + TN K+PYF+APIYL+NK+QIGK+DE+FGP+N+ YF+ Sbjct: 25 GPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYFT 84 Query: 246 VKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPK 353 VK EG++++S+ GDK ++ KL+PL RFLP+PK Sbjct: 85 VKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFLPKPK 120
>NOLA1_XENTR (Q5RJV1) H/ACA ribonucleoprotein complex subunit 1-like protein| Length = 218 Score = 126 bits (316), Expect = 3e-29 Identities = 61/101 (60%), Positives = 77/101 (76%), Gaps = 2/101 (1%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTK-LTNE-KVPYFSAPIYLQNKTQIGKVDEIFGPINE 233 D+GPP VVEV F+H CE D V K +T E +VPYF+APIYL+NK QIGKVDEIFG + + Sbjct: 56 DQGPPESVVEVGEFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRD 115 Query: 234 SYFSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPKG 356 YFS+K+ E + A+S+ + KF+IDP KLLPL RFLP+P G Sbjct: 116 FYFSIKLSENMKASSFKKLQKFYIDPAKLLPLQRFLPRPPG 156
>NOLA1_RAT (Q6AYA1) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar| protein family A member 1) Length = 226 Score = 125 bits (315), Expect = 4e-29 Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 2/101 (1%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTKLTNE--KVPYFSAPIYLQNKTQIGKVDEIFGPINE 233 D+GPP VV + F+H CE D V K T E KVPYF+AP+YL+NK QIGKVDEIFG + + Sbjct: 65 DQGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 124 Query: 234 SYFSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPKG 356 YFSVK+ E + A+S+ + KF+IDP KLLPL RFLP+P G Sbjct: 125 FYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPG 165
>NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar| protein family A member 1) (snoRNP protein GAR1) Length = 217 Score = 125 bits (314), Expect = 6e-29 Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 2/101 (1%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTKLTNE--KVPYFSAPIYLQNKTQIGKVDEIFGPINE 233 D+GPP VV + FLH CE D V K T + KVPYF+AP+YL+NK QIGKVDEIFG + + Sbjct: 63 DQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 122 Query: 234 SYFSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPKG 356 YFSVK+ E + A+S+ + KF+IDP KLLPL RFLP+P G Sbjct: 123 FYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPG 163
>NOLA1_MOUSE (Q9CY66) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar| protein family A member 1) (snoRNP protein GAR1) Length = 231 Score = 125 bits (314), Expect = 6e-29 Identities = 59/101 (58%), Positives = 75/101 (74%), Gaps = 2/101 (1%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTKLTNE--KVPYFSAPIYLQNKTQIGKVDEIFGPINE 233 D+GPP VV + F+H CE D V K T E KVPYF+AP+YL+NK Q+GKVDEIFG + + Sbjct: 74 DQGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQLRD 133 Query: 234 SYFSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPKG 356 YFSVK+ E + A+S+ + KF+IDP KLLPL RFLP+P G Sbjct: 134 FYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPG 174
>NOLA1_BRARE (Q7ZVE0) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar| protein family A member 1) Length = 226 Score = 122 bits (305), Expect = 6e-28 Identities = 58/101 (57%), Positives = 74/101 (73%), Gaps = 2/101 (1%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTKLTNE--KVPYFSAPIYLQNKTQIGKVDEIFGPINE 233 D GPP VV + F+H CE + V K E KVPYF+AP+YL+NK QIGKVDEIFG + + Sbjct: 57 DYGPPEYVVALGEFMHPCEDEIVCKCVTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 116 Query: 234 SYFSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPKG 356 YFSVK+ + + A+S+ + KF+IDPMKLLPL RFLP+P G Sbjct: 117 FYFSVKLSDNMKASSFKKLQKFYIDPMKLLPLQRFLPRPPG 157
>NOLA1_CAEBR (Q61B10) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein Length = 246 Score = 116 bits (290), Expect = 3e-26 Identities = 54/99 (54%), Positives = 70/99 (70%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESY 239 D+GPP EVV V F H C+ D V T+ K+PYF+APIY +NK Q+GK+DEIFG E+ Sbjct: 61 DQGPPEEVVLVGVFSHKCQDDIVCNNTSGKIPYFNAPIYFENKEQVGKIDEIFGSPGENG 120 Query: 240 FSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPKG 356 FSV + +GV A+S+ G + +IDP KLLP+ RFLPQ G Sbjct: 121 FSVTLSQGVKASSFKSGSELYIDPGKLLPVERFLPQVGG 159
>NOLA1_CAEEL (Q9TYK1) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein Length = 244 Score = 112 bits (281), Expect = 4e-25 Identities = 53/99 (53%), Positives = 69/99 (69%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESY 239 D+GPP EVV V F H C+ D V T+ K+PYF+APIY +NK Q+GK+DEIFG E+ Sbjct: 53 DQGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFGSPGENG 112 Query: 240 FSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFLPQPKG 356 FSV + +GV A+S+ + +IDP KLLP+ RFLPQ G Sbjct: 113 FSVTLSQGVKASSFEPESQLYIDPGKLLPVDRFLPQAGG 151
>NOLA1_DROME (Q7KVQ0) H/ACA ribonucleoprotein complex subunit 1-like protein| (GCR 101 snRNP) Length = 237 Score = 110 bits (274), Expect = 2e-24 Identities = 49/103 (47%), Positives = 72/103 (69%), Gaps = 3/103 (2%) Frame = +3 Query: 60 DEGPPAEVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESY 239 D GPP V+ + ++++C+ D V K+ + VPYF+API+L+NK Q+GK+DEIFG + + Sbjct: 62 DTGPPERVIPLGNYVYSCQNDLVCKVDIQDVPYFNAPIFLENKEQVGKIDEIFGTVRDYS 121 Query: 240 FSVKMFEGVIATSYNEGDKFFIDPMKLLPLSRFL---PQPKGS 359 S+K+ + V A S+ K FIDP KLLP++RFL PQPKG+ Sbjct: 122 VSIKLSDNVYANSFKPNQKLFIDPGKLLPIARFLPKPPQPKGA 164
>GAR1_ENCCU (O96722) H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein| GAR1) Length = 195 Score = 55.8 bits (133), Expect = 5e-08 Identities = 30/90 (33%), Positives = 49/90 (54%) Frame = +3 Query: 78 EVVEVSTFLHACEGDAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINESYFSVKMF 257 E E+ L+ C+G V KL + +PY ++P+ + IGKVDEI G I++ + ++K Sbjct: 28 ETAELGKILYMCQGQLVIKLAAKDIPYPNSPVLDASSKIIGKVDEILGRIDDVHVTIKPD 87 Query: 258 EGVIATSYNEGDKFFIDPMKLLPLSRFLPQ 347 + + EG+ F K +P RFLP+ Sbjct: 88 DQ--CSISKEGETLFSYADKFIPKKRFLPR 115
>Y886_METTH (O26972) Hypothetical protein MTH886| Length = 92 Score = 34.7 bits (78), Expect = 0.13 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 141 NEKVPYFSAPIYLQNKTQIGKVDEIFGPINESYFSVK 251 +++ AP++ + +IGKV +IFGP Y S+K Sbjct: 20 SDRTQQLGAPVFTSDGKRIGKVHDIFGPTRNPYISIK 56
>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic| region Length = 492 Score = 29.3 bits (64), Expect = 5.4 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = +3 Query: 177 LQNKTQIGKVDEIFGPINESYFSVKM 254 L+++T IG + E+FGP+ ++ +K+ Sbjct: 172 LEDRTLIGMLTEVFGPLQNPFYRIKL 197
>SYV_RICTY (Q68W50) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 814 Score = 28.9 bits (63), Expect = 7.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 99 FLHACEGDAVTKLTNEKVPYFSAPIYLQNK 188 + H + A+T L NEKVP + P+ Q+K Sbjct: 235 YKHLADKSAITPLFNEKVPILADPLVQQDK 264
>SYV_RICPR (Q9ZCN6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 814 Score = 28.9 bits (63), Expect = 7.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 99 FLHACEGDAVTKLTNEKVPYFSAPIYLQNK 188 + H + A+T L NEKVP + P+ Q+K Sbjct: 235 YKHLADKSAITPLFNEKVPILADPLVQQDK 264
>G6PD_ZYMMO (P21907) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)| Length = 485 Score = 28.9 bits (63), Expect = 7.1 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%) Frame = +3 Query: 120 DAVTKLTNEKVPYFSAPIYLQNKTQIGKVDEIFGPINES---YFSV--KMFEGVIATSYN 284 DA K N+ F A + + + TQ GK+ ++ GP+ + Y S +FEG IA Sbjct: 74 DAKAKFLNK---LFYATVDITDPTQFGKLADLCGPVEKGIAIYLSTAPSLFEGAIAGLKQ 130 Query: 285 EGDKFFIDPMKLLPLSRFLPQPKGST 362 G P L L + L Q S+ Sbjct: 131 AG---LAGPTSRLALEKPLGQDLASS 153
>FENR_MESCR (P41343) Ferredoxin--NADP reductase, chloroplast precursor (EC| 1.18.1.2) (FNR) Length = 365 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 8/57 (14%) Frame = +3 Query: 135 LTNEKVPYFSAPIYLQNKTQIGKV-------DEIFGPINE-SYFSVKMFEGVIATSY 281 +T+EK+ + P+Y +N + GKV ++ P+ + S KM EGVI Y Sbjct: 27 ITHEKINFNKVPLYYRNVSVGGKVGTIRAVASDVEAPVAKVEKHSKKMEEGVIVNKY 83
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 28.5 bits (62), Expect = 9.2 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +1 Query: 61 TRALQPKSSRSRRSC-TPAXXXXXXXXXXXKCPTLARPYTSRTRPRSAKSTRSSAPST-N 234 ++A+QP ++ ++++ A + TLA+ T+ ++AKS S+A S+ N Sbjct: 6 SKAIQPAAATTKQTAEATATTTMAHTQQKSQLSTLAKTTTTTATNKAAKSVVSNANSSGN 65 Query: 235 HISRSRCLRESLQHLTT 285 + S+ L +S + TT Sbjct: 66 NSSKKLALSQSQKTTTT 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,633,692 Number of Sequences: 219361 Number of extensions: 789176 Number of successful extensions: 2503 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2495 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
