ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast74c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MEN8_SILLA (O24356) MEN-8 protein precursor 37 0.038
2NLTP4_ORYSA (Q42976) Nonspecific lipid-transfer protein 4 precur... 33 0.42
3M7_LILHE (Q40190) M7 protein precursor (LHM7) 31 2.1
4LIM2_LILLO (Q43534) LIM2 protein precursor 31 2.1
5LIM1_LILLO (Q43533) LIM1 protein precursor 31 2.1
6NLTP2_ORYSA (Q42978) Nonspecific lipid-transfer protein 2 precur... 30 2.7
7NLTP1_ORYSA (P23096) Nonspecific lipid-transfer protein 1 precur... 30 2.7
8MC1_PINRA (O24493) Male-cone protein 1 precursor (PRMC1) 30 3.6
9LIM3_LILLO (Q40227) LIM3 protein precursor 30 4.7

>MEN8_SILLA (O24356) MEN-8 protein precursor|
          Length = 100

 Score = 36.6 bits (83), Expect = 0.038
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 212 CRTYCTVGSTEASPSSACCGAVRGGDFHRLCQYRSVLPNDIDANRAMQIPGKCGYGAANC 391
           C  Y   G+   +PS  CC A+ G +   +C    V         A Q+P  C   A NC
Sbjct: 48  CAPYVVPGAVNTNPSQECCAALSGVNHDCMCNTLRV---------ASQLPSSCNLAALNC 98



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>NLTP4_ORYSA (Q42976) Nonspecific lipid-transfer protein 4 precursor (LTP 4)|
          Length = 121

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
 Frame = +2

Query: 188 DTGSMVRNCRTYCTVGSTEASPSSACCGAVR--------GGDFHRLCQYRSVLPN----- 328
           D  S +  C +Y  V   E+SPSS+CC  VR          D    C   S L N     
Sbjct: 34  DVTSSIAPCLSY--VMGRESSPSSSCCSGVRTLNGKASSSADRRTAC---SCLKNMASSF 88

Query: 329 -DIDANRAMQIPGKCGYGAA 385
            +++   A  IP KCG   A
Sbjct: 89  RNLNMGNAASIPSKCGVSVA 108



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>M7_LILHE (Q40190) M7 protein precursor (LHM7)|
          Length = 89

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +2

Query: 179 CNVDTGSMVRNCRTYCTVGSTEASPSSACCGAVRGGDFHRLCQYRSVLPNDIDANRAMQI 358
           C+   G ++  C  Y   GS  A PS  CC A++  +   LC+  +++ +         +
Sbjct: 28  CSAAIGELM-TCGPYVLPGSNGA-PSEQCCSALKAVNHGCLCETINIISS---------L 76

Query: 359 PGKCGYGAANC 391
           P  C   A NC
Sbjct: 77  PDHCSLPAVNC 87



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>LIM2_LILLO (Q43534) LIM2 protein precursor|
          Length = 90

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +2

Query: 179 CNVDTGSMVRNCRTYCTVGSTEASPSSACCGAVRGGDFHRLCQYRSVLPNDIDANRAMQI 358
           C+   G ++  C  Y   G+  A PS  CC A+R  +   LC+  +++ +         +
Sbjct: 29  CSAAIGELM-TCGPYVLPGNNGA-PSEQCCSALRAVNHGCLCETINIISS---------L 77

Query: 359 PGKCGYGAANC 391
           P  C   A NC
Sbjct: 78  PDHCSLPAVNC 88



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>LIM1_LILLO (Q43533) LIM1 protein precursor|
          Length = 90

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +2

Query: 179 CNVDTGSMVRNCRTYCTVGSTEASPSSACCGAVRGGDFHRLCQYRSVLPNDIDANRAMQI 358
           C+   G ++  C  Y   G+  A PS  CC A+R  +   LC+  +++ +         +
Sbjct: 29  CSAAIGELM-TCGPYVLPGNNGA-PSEQCCSALRAVNHGCLCETINIISS---------L 77

Query: 359 PGKCGYGAANC 391
           P  C   A NC
Sbjct: 78  PDHCSLPAVNC 88



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>NLTP2_ORYSA (Q42978) Nonspecific lipid-transfer protein 2 precursor (LTP 2)|
          Length = 118

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
 Frame = +2

Query: 197 SMVRNCRTYCTVGSTEASPSSACCGAVRG--------GDFHRLCQYRSVLPNDI---DAN 343
           S V  C +Y   GS    PS+ACC  VR          D    C     +   I   +A 
Sbjct: 35  SAVSPCLSYARGGS---GPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAG 91

Query: 344 RAMQIPGKCG 373
            A  IP KCG
Sbjct: 92  NAASIPSKCG 101



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>NLTP1_ORYSA (P23096) Nonspecific lipid-transfer protein 1 precursor (LTP 1)|
           (PAPI)
          Length = 116

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
 Frame = +2

Query: 197 SMVRNCRTYCTVGSTEASPSSACCGAVRG--------GDFHRLCQYRSVLPNDI---DAN 343
           S V  C TY   G   A PS+ACC  VR          D    C         I   +A 
Sbjct: 33  SAVGPCLTYARGG---AGPSAACCSGVRSLFAAASTTADRRTACNCLKNAARGIKGLNAG 89

Query: 344 RAMQIPGKCG 373
            A  IP KCG
Sbjct: 90  NAASIPSKCG 99



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>MC1_PINRA (O24493) Male-cone protein 1 precursor (PRMC1)|
          Length = 92

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +2

Query: 212 CRTYCTVGSTEASPSSACCGAVRGGDFHRLCQYRSVLPNDIDANRAMQIPGKCGYGAANC 391
           C +   + S    PSS CC A++G     +C+              + +P KC   A  C
Sbjct: 38  CTSAVGLSSNGVKPSSECCDALKGTSTSCVCK---------SVRAVISLPAKCNLPALTC 88



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>LIM3_LILLO (Q40227) LIM3 protein precursor|
          Length = 90

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +2

Query: 179 CNVDTGSMVRNCRTYCTVGSTEASPSSACCGAVRGGDFHRLCQYRSVLPNDIDANRAMQI 358
           C+   G ++ +C  Y   G+ + +PS+ CC A++  +   LC+  +++ +         +
Sbjct: 28  CSAAIGGLM-SCGPYVLPGN-QLTPSTQCCSAIQAVNHGCLCETINIISS---------L 76

Query: 359 PGKCGYGAANC 391
           PG C     +C
Sbjct: 77  PGHCSLPPVSC 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,532,726
Number of Sequences: 219361
Number of extensions: 565922
Number of successful extensions: 1678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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