ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast74c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box prote... 29 4.0
2P66B_MOUSE (Q8VHR5) Transcriptional repressor p66 beta (p66/p68)... 28 9.0
3P66B_HUMAN (Q8WXI9) Transcriptional repressor p66 beta (p66/p68)... 28 9.0

>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)|
          Length = 540

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 11  LSSLQQLPHMAMATSTFSPHPLSLKPQLGPKP 106
           LS ++  PH   A +   P P++L P+  P P
Sbjct: 50  LSGIEAAPHTLAAAAPLPPSPIALGPETAPPP 81



to top

>P66B_MOUSE (Q8VHR5) Transcriptional repressor p66 beta (p66/p68) (GATA zinc|
           finger domain-containing protein 2B)
          Length = 594

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  LPHMAMATSTFSPHPLSLKPQLGP 100
           LPHM M+    +P+P  L+ Q GP
Sbjct: 257 LPHMLMSQRVIAPNPAQLQGQRGP 280



to top

>P66B_HUMAN (Q8WXI9) Transcriptional repressor p66 beta (p66/p68) (GATA zinc|
           finger domain-containing protein 2B)
          Length = 593

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  LPHMAMATSTFSPHPLSLKPQLGP 100
           LPHM M+    +P+P  L+ Q GP
Sbjct: 256 LPHMLMSQRVIAPNPAQLQGQRGP 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,430,305
Number of Sequences: 219361
Number of extensions: 148945
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
to top