ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast74b08 |
|---|---|
| Clone Library Name | barley_pub |
>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)| Length = 634 Score = 35.4 bits (80), Expect = 0.080 Identities = 24/87 (27%), Positives = 34/87 (39%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTP 304 PPQP+ P DN +PD+PD P + P + ++ P P P Sbjct: 147 PPQPDIPCDNPPQPDQPDDNPPIPNIPTDWIPNIPTDWIPDIPEK--PTTPATTPNIPAT 204 Query: 303 LKSFHKVGLESSSTGSSFPADSAKPVP 223 + SSS+ S+ P SA P Sbjct: 205 TTTSESSSSSSSSSSSTTPKTSASTTP 231
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 31.2 bits (69), Expect = 1.5 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 4/90 (4%) Frame = -1 Query: 480 PQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVR--APTYPT 307 P+P + P +P P P E PA P K V G S A AP Sbjct: 80 PKPAATPQQAAKPAAPKPAAPKPAAEKK-PAPKPAAK--PVPKPGFSAAKAESSAPKPAA 136 Query: 306 PLKSFHKVGLESSSTGS--SFPADSAKPVP 223 P + K +SS+T + S P AKP P Sbjct: 137 PKPAAPKPAAQSSTTATPGSMPRPQAKPAP 166
>MMP15_MOUSE (O54732) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) Length = 657 Score = 30.8 bits (68), Expect = 2.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT 397 PP+P PP +P+RP K GP Q T Sbjct: 327 PPRPPQPPHPGGKPERPPKPGPPPQPRAT 355
>MMP15_HUMAN (P51511) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) (SMCP-2) Length = 669 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT 397 PP+P PP +P+RP K GP Q T Sbjct: 331 PPRPPQPPPPGGKPERPPKPGPPVQPRAT 359
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 30.4 bits (67), Expect = 2.6 Identities = 27/95 (28%), Positives = 35/95 (36%) Frame = -1 Query: 480 PQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPL 301 P P P P P Q P+ P ++ + KSS ISL V AP P+ Sbjct: 175 PAPPLPLSGASAPKVP-------QNRPHMPSVRPAHRSHQRKSSNISLPSVSAPPLPS-- 225 Query: 300 KSFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSR 196 S T S P + P P + LDS+ Sbjct: 226 --------ASLPTHVSNPPQAPPPPPTPTIGLDSK 252
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 30.4 bits (67), Expect = 2.6 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 14/111 (12%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAP-------VR 325 PP + PP P+ TGPW+ P ++ + SSG P +R Sbjct: 456 PPSTDVPPS----PEAGGTTGPWTSTTSEVPRPPEPSQGPSTTSSGGGTGPHPPSGTTLR 511 Query: 324 APTYPTP-------LKSFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSRQ 193 PT TP + H+ T + +++P+P V + S Q Sbjct: 512 PPTSSTPGGSPGAENSTSHQPATPGGDTAQTPKPGTSQPMPPGVGTSTSHQ 562
>VE4_HPV5B (P26550) Probable protein E4| Length = 245 Score = 30.4 bits (67), Expect = 2.6 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT---CPASD---PRNK*NNVKSSGISLAPVRA 322 PPQP P P + P ++EGT PAS R+K + +G L P RA Sbjct: 35 PPQPPLTPRPDSSPHQNSHNKPKPEEEGTDGGPPASQGDRKRSKGDQGPDTGPGLGPGRA 94 Query: 321 PT-YPTPL 301 P+ PTPL Sbjct: 95 PSPKPTPL 102
>RAD9A_HUMAN (Q99638) Cell cycle checkpoint control protein RAD9A (EC 3.1.11.2)| (DNA repair exonuclease rad9 homolog A) (hRAD9) Length = 391 Score = 30.4 bits (67), Expect = 2.6 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Frame = -1 Query: 444 PDRPDKTGPWSQKE-----GTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPL 301 P P GP S++E T P + P K ++ I LAPVR+P P+P+ Sbjct: 331 PQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSI-LAPVRSPQGPSPV 382
>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C| suppressor SKC1) Length = 1155 Score = 30.0 bits (66), Expect = 3.3 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 13/115 (11%) Frame = -1 Query: 357 KSSGISLA-PVRAPTYPTPLKSFHKVGLESS--------STGSSFPADSAKPVPLAVVSL 205 K+SG + P + T PTP + H + L SS ST S F +S K + Sbjct: 163 KNSGSHMGDPNQLSTPPTPKSAGHTMELHSSFNGKHSSSSTSSLFALESLKTQNRRSSNS 222 Query: 204 DSRQGQWESR*SIHARH*LDDE----AFGYLKRVIVTPAVYPRLVEFLHFDIQST 52 + Q+ + H RH + + + + TP VYP L+ + + T Sbjct: 223 SNHSSQYRRHTNQHQRHHSRSKSSPVSLTEISMIKGTPLVYPALLSLIAIKFKQT 277
>TAU_MACMU (P57786) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 458 Score = 29.6 bits (65), Expect = 4.4 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = -1 Query: 483 PPQPNSPPDNVFRP--DRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYP 310 PP P +PP + + +P P S++ G P S R+ ++ S G + R P+ P Sbjct: 175 PPAPKTPPSSATKQVQRKPPPAEPTSER-GEPPKSGDRSGYSSPGSPGTPGSRSRTPSLP 233 Query: 309 TP 304 TP Sbjct: 234 TP 235
>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 827 Score = 29.6 bits (65), Expect = 4.4 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = -1 Query: 435 PDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPLKSFHKVGLESSSTGS 256 PD + K G+ S PR++ +K G L+ R + P K+ HKV L ++S Sbjct: 513 PDSQSAYVPKNGS---SGPRSQ--GLKDMGTGLSGPRKQSERRPRKT-HKVDLRAASDFL 566 Query: 255 SFPADSAKPVPL 220 P S +PVP+ Sbjct: 567 LMPQMSIQPVPV 578
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 29.3 bits (64), Expect = 5.7 Identities = 27/87 (31%), Positives = 32/87 (36%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTP 304 PP P SPP + P P P S P+ P S S P AP P+P Sbjct: 287 PPSPPSPPPSPAPPTPPTPPSP-SPPSPVPPSPAPVPPSPAPPSPAPSPPPSPAPPTPSP 345 Query: 303 LKSFHKVGLESSSTGSSFPADSAKPVP 223 S S S S P+ S P+P Sbjct: 346 SPSPSPSPSPSPSPSPS-PSPSPSPIP 371
>PAK6_HUMAN (Q9NQU5) Serine/threonine-protein kinase PAK 6 (EC 2.7.11.1)| (p21-activated kinase 6) (PAK-6) (PAK-5) Length = 681 Score = 28.9 bits (63), Expect = 7.5 Identities = 20/83 (24%), Positives = 30/83 (36%) Frame = -1 Query: 480 PQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPL 301 P P S P++ FRP + D K + P+ P + +P+ +P Sbjct: 281 PPPQSKPNSSFRPPQKDNPPSLVAKAQSLPSDQPVG----------TFSPLTTSDTSSPQ 330 Query: 300 KSFHKVGLESSSTGSSFPADSAK 232 KS G S PA S + Sbjct: 331 KSLRTAPATGQLPGRSSPAGSPR 353
>DBP_RAT (P16443) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (D site albumin promoter-binding protein 1) Length = 325 Score = 28.9 bits (63), Expect = 7.5 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 9/106 (8%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPT- 307 PP P PP + P +T S G+C +S PR+ +P AP T Sbjct: 129 PPSP-PPPGGLSPAPSPARTPAPSPGPGSCSSSSPRS------------SPGHAPARATL 175 Query: 306 PLKSFHKVGLESSSTGSSFPADSAK--------PVPLAVVSLDSRQ 193 H+ GL S T S D+ + P LA+ S+ + Sbjct: 176 GAAGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHE 221
>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 28.9 bits (63), Expect = 7.5 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 9/106 (8%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPT- 307 PP P PP + P +T S G+C +S PR+ +P AP T Sbjct: 129 PPSP-PPPGGLSPAPSPARTPAPSPGPGSCSSSSPRS------------SPGHAPARATL 175 Query: 306 PLKSFHKVGLESSSTGSSFPADSAK--------PVPLAVVSLDSRQ 193 H+ GL S T S D+ + P LA+ S+ + Sbjct: 176 GAAGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHE 221
>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low| density lipoprotein receptor defect B-complementing protein) Length = 980 Score = 28.9 bits (63), Expect = 7.5 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +1 Query: 190 SLSTIQRNHSQGNGLGGISGERRPC 264 +L T+ R H G G+G + GE + C Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317
>VE4_HPV05 (P06924) Probable protein E4| Length = 245 Score = 28.9 bits (63), Expect = 7.5 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT---CPASD---PRNK*NNVKSSGISLAPVRA 322 PPQP P P + P ++EGT PAS R+K + +G L P R Sbjct: 35 PPQPPLTPRPDSSPHQNSHNKPKPEEEGTDGGPPASQGDRKRSKGDQGPDTGPGLGPGRG 94 Query: 321 PT-YPTPL 301 P+ PTPL Sbjct: 95 PSPKPTPL 102
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/60 (28%), Positives = 24/60 (40%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTP 304 PP ++PP N P GP P++ P + SSG+S P + P P Sbjct: 122 PPAVSAPPANPPTTGAPPGPGPTPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTGGPPPP 181
>COL19_CAEEL (P18835) Cuticle collagen 19 precursor| Length = 289 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDP 379 P P P ++P +P + GP + T PA +P Sbjct: 199 PAGPRGEPGTEYKPGQPGRPGPQGPRGETGPAGNP 233
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 28.5 bits (62), Expect = 9.7 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Frame = -1 Query: 483 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTP 304 PP P P + F + TG Q+ P P N NV SS P +YP P Sbjct: 58 PPGPPPPGPHQFGQNGAHATGHPPQR---FPGPPPVN---NVASSHAPYQPSAQSSYPGP 111 Query: 303 L--KSFHKVG-----LESSSTGSSF-PADSAKPVPLAVVSLDS 199 + S ++G ++ +S GS P P PL+ SL + Sbjct: 112 ISTSSVTQLGSQLSAMQINSYGSGMAPPSQGPPGPLSATSLQT 154
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -2 Query: 461 LTMSSARIGPIKPGLGAKRRGHAPLPTH 378 L S+A GP P GA+ H P+ TH Sbjct: 452 LANSNAHPGPFPPSTGAQSTAHPPVSTH 479
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -2 Query: 461 LTMSSARIGPIKPGLGAKRRGHAPLPTH 378 L S+A GP P GA+ H P+ TH Sbjct: 451 LANSNAHPGPFPPSTGAQSTAHPPVSTH 478
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 28.5 bits (62), Expect = 9.7 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 11/103 (10%) Frame = +2 Query: 191 PCLLS---------SETTAKGTGLAESAGKEDPVELDSSPTL*NDLRGVG*VGALTGASE 343 PC+LS S TTA A S GK P P L + L G +G L+ + Sbjct: 695 PCVLSAPQPGPPTSSVTTATTDPGASSLGKA-PSNSGRPPQLLSPLLGASLLGDLSSLTS 753 Query: 344 IPLLLTLFYLFRGSEAGHVPSFWLQ--GPVLSGRSGRKTLSGG 466 P G +PS LQ GP+LSG+ G + L GG Sbjct: 754 SP--------------GALPSL-LQPPGPLLSGQLGLQLLPGG 781
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 28.5 bits (62), Expect = 9.7 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Frame = -1 Query: 480 PQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVK----SSGISLAPVRAP-T 316 P P+ PP P +P P +K PA P K G PV+ P T Sbjct: 299 PSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGT 358 Query: 315 YPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAV 214 P + + TGS P+ S +P P A+ Sbjct: 359 TKPPAQPLGPAKPPAQQTGSEKPS-SEQPGPKAL 391 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,348,536 Number of Sequences: 219361 Number of extensions: 1577215 Number of successful extensions: 4379 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4371 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
