ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast74b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (... 30 3.6
2ERG1_SCHPO (Q9C1W3) Probable squalene monooxygenase (EC 1.14.99.... 29 8.1

>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)|
           (3-dehydrosphinganine reductase) (KDS reductase)
          Length = 969

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 168 FSYLGFQPTSVDKRESSRQYLYWGARIDCPGKHCSSCAGLGHQESSLRCALEE 326
           F+++  +P  V  +   + +  W + I   G+ C SCA      S  RC+  E
Sbjct: 783 FAHIAGEPARVPCKNCHKGHGPWTSCIVVDGQMCGSCANCWFNASGARCSFHE 835



to top

>ERG1_SCHPO (Q9C1W3) Probable squalene monooxygenase (EC 1.14.99.7) (Squalene|
           epoxidase) (SE)
          Length = 457

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
 Frame = +3

Query: 306 LRCALEEALFLDRIFVMPSRMCLSSVHNTKGII---DSSN 416
           LR +L+ A++ DR+  MP++    +V+ TKG+I   DS+N
Sbjct: 257 LRPSLKAAVYNDRLRSMPNQFLPPTVNRTKGMILVGDSNN 296


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,434,288
Number of Sequences: 219361
Number of extensions: 734056
Number of successful extensions: 1933
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1932
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top