ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast74a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK058988.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
3dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
4dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
5gb|AE009432.1| Agrobacterium tumefaciens str. C58 Ti plasmid, se... 42 1.8
6gb|AE007940.1| Agrobacterium tumefaciens str. C58 plasmid Ti, se... 42 1.8
7gb|AF010180.1| Agrobacterium tumefaciens plasmid pTiC58 TraI reg... 42 1.8
8dbj|AB016260.1| Agrobacterium tumefaciens plasmid pTi-SAKURA, co... 42 1.8
9gb|DQ265193.1| Plasmodium falciparum isolate Pf42_08 RIFIN (rif)... 42 1.8
10gb|AC161043.9| Mus musculus chromosome 1, clone wi1-483A16, comp... 40 7.0
11gb|L41732.4|ABCLSDA Gluconacetobacter diazotrophicus levansucras... 40 7.0
12gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.0
13gb|BC032721.1| Homo sapiens HIR histone cell cycle regulation de... 40 7.0
14gb|AC005816.6| Mus musculus strain 129/Sv clone ct7-326b16 map 1... 40 7.0
15emb|X92590.1|MMHIRAPRT M.musculus mRNA for HIRA protein 40 7.0
16emb|X75295.1|MMTUPLE1 M.musculus TUP1-like enhancer of split gen... 40 7.0
17emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.0
18emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in l... 40 7.0
19emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 i... 40 7.0
20emb|X75296.1|HSTUPLE1 H.sapiens TUP1-like enhancer of split gene... 40 7.0
21gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence 40 7.0
22gb|AC079222.17| Mus musculus chromosome 1, clone RP22-292L24, co... 40 7.0
23gb|AC003062.2| Mouse Chromosome 16 Region Syntenic to DGCR BAC C... 40 7.0
24emb|BX255948.4| Zebrafish DNA sequence from clone CH211-250J1, c... 40 7.0
25emb|BX248087.9| Zebrafish DNA sequence from clone CH211-191J22, ... 40 7.0
26ref|XM_344057.2| PREDICTED: Rattus norvegicus similar to histone... 40 7.0
27gb|AC133573.11| Mus musculus strain C57BL/6J clone rp23-139f17, ... 40 7.0
28gb|BC039835.1| Homo sapiens HIR histone cell cycle regulation de... 40 7.0
29gb|AF065246.1|AF065246 Agrobacterium tumefaciens strain Chry5 pl... 40 7.0
30gb|AC113264.21| Mus musculus strain C57BL/6J chromosome 16 clone... 40 7.0
31gb|AC124442.3| Mus musculus BAC clone RP24-178G20 from 7, comple... 40 7.0
32gb|BC060181.1| Mus musculus cDNA clone IMAGE:6831824, containing... 40 7.0
33ref|NM_010435.2| Mus musculus histone cell cycle regulation defe... 40 7.0
34emb|X91501.1|HSHIRAHGN H.sapiens HIRAHs gene 40 7.0
35emb|X89887.1|HSHIRAGN1 Homo sapiens mRNA for WD repeat protein (... 40 7.0 
>dbj|AK058988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F01, full
           insert sequence
          Length = 1528

 Score =  184 bits (93), Expect = 2e-43
 Identities = 198/233 (84%)
 Strand = Plus / Plus

                                                                       
Query: 141 atgtcgatccagggccggctcctcgaggtcagagtgacggggtgcaggaagctgcgggac 200
           |||||||| || |||| | ||||||| |||||||| || ||||||||||||||| |||||
Sbjct: 1   atgtcgatacaaggccagatcctcgaagtcagagtcactgggtgcaggaagctgagggac 60

                                                                       
Query: 201 accgagttcttctcgcgccaggacccctacgtcatcatcgactacgccaacaacaagctg 260
           || ||||||||| |||| ||||| |||||||||  |||||| || |||| ||||||| | 
Sbjct: 61  acggagttcttcacgcggcaggatccctacgtctgcatcgagtatgccaccaacaagttc 120

                                                                       
Query: 261 cgcaccaggacatgcaccgatggaggaaggaacccgtcctttgacgagaagtttcatata 320
           |||||| | || ||||||||||| |||||||||||  | |||||||||||||||||||||
Sbjct: 121 cgcacccgcacctgcaccgatgggggaaggaaccctacttttgacgagaagtttcatata 180

                                                                
Query: 321 ccactcatcgaggggctccgtgagctgagtatcaacgtgtggaacagcaacac 373
           || ||||| |||||||| |||||||| |   |||  |||||||||||||||||
Sbjct: 181 cctctcattgaggggcttcgtgagctaaccgtcacagtgtggaacagcaacac 233



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                       
Query: 405 agggtgccgctgaacaaggtgctcacgagtggcttcgatgacgcctcatggcccctccag 464
           ||||||| |||| | |||||||| ||| ||||||  ||||| ||||||||||||||||||
Sbjct: 337 agggtgcagctgcataaggtgcttacgcgtggctatgatgatgcctcatggcccctccag 396

                        
Query: 465 acacgccatatga 477
           |||||||||||||
Sbjct: 397 acacgccatatga 409
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                            
Query: 279      gatggaggaaggaacccgtcctttgacgagaagtttcatataccactcatcgaggggctc 338
                ||||| |||||||||||  | ||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 25581794 gatgggggaaggaaccctacttttgacgagaagtttcatatacctctcattgaggggctt 25581735

                                                   
Query: 339      cgtgagctgagtatcaacgtgtggaacagcaacac 373
                |||||||| |   |||  |||||||||||||||||
Sbjct: 25581734 cgtgagctaaccgtcacagtgtggaacagcaacac 25581700



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                            
Query: 405      agggtgccgctgaacaaggtgctcacgagtggcttcgatgacgcctcatggcccctccag 464
                ||||||| |||| | |||||||| ||| ||||||  ||||| ||||||||||||||||||
Sbjct: 25581596 agggtgcagctgcataaggtgcttacgcgtggctatgatgatgcctcatggcccctccag 25581537

                             
Query: 465      acacgccatatga 477
                |||||||||||||
Sbjct: 25581536 acacgccatatga 25581524



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                            
Query: 180      gggtgcaggaagctgcgggacaccgagttcttctcgcgccaggacccctacgtcatcatc 239
                ||||||||||||||| ||||||| ||||||||| |||| ||||| |||||||||  ||||
Sbjct: 25583511 gggtgcaggaagctgagggacacggagttcttcacgcggcaggatccctacgtctgcatc 25583452

                                                        
Query: 240      gactacgccaacaacaagctgcgcaccaggacatgcaccg 279
                || || |||| ||||||| | |||||| | || |||||||
Sbjct: 25583451 gagtatgccaccaacaagttccgcacccgcacctgcaccg 25583412
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>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0523F01
          Length = 146419

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                          
Query: 279    gatggaggaaggaacccgtcctttgacgagaagtttcatataccactcatcgaggggctc 338
              ||||| |||||||||||  | ||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 100111 gatgggggaaggaaccctacttttgacgagaagtttcatatacctctcattgaggggctt 100052

                                                 
Query: 339    cgtgagctgagtatcaacgtgtggaacagcaacac 373
              |||||||| |   |||  |||||||||||||||||
Sbjct: 100051 cgtgagctaaccgtcacagtgtggaacagcaacac 100017



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                         
Query: 405   agggtgccgctgaacaaggtgctcacgagtggcttcgatgacgcctcatggcccctccag 464
             ||||||| |||| | |||||||| ||| ||||||  ||||| ||||||||||||||||||
Sbjct: 99913 agggtgcagctgcataaggtgcttacgcgtggctatgatgatgcctcatggcccctccag 99854

                          
Query: 465   acacgccatatga 477
             |||||||||||||
Sbjct: 99853 acacgccatatga 99841



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                          
Query: 180    gggtgcaggaagctgcgggacaccgagttcttctcgcgccaggacccctacgtcatcatc 239
              ||||||||||||||| ||||||| ||||||||| |||| ||||| |||||||||  ||||
Sbjct: 101828 gggtgcaggaagctgagggacacggagttcttcacgcggcaggatccctacgtctgcatc 101769

                                                      
Query: 240    gactacgccaacaacaagctgcgcaccaggacatgcaccg 279
              || || |||| ||||||| | |||||| | || |||||||
Sbjct: 101768 gagtatgccaccaacaagttccgcacccgcacctgcaccg 101729
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>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0458E02
          Length = 154458

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                        
Query: 279  gatggaggaaggaacccgtcctttgacgagaagtttcatataccactcatcgaggggctc 338
            ||||| |||||||||||  | ||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 5239 gatgggggaaggaaccctacttttgacgagaagtttcatatacctctcattgaggggctt 5180

                                               
Query: 339  cgtgagctgagtatcaacgtgtggaacagcaacac 373
            |||||||| |   |||  |||||||||||||||||
Sbjct: 5179 cgtgagctaaccgtcacagtgtggaacagcaacac 5145



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                        
Query: 405  agggtgccgctgaacaaggtgctcacgagtggcttcgatgacgcctcatggcccctccag 464
            ||||||| |||| | |||||||| ||| ||||||  ||||| ||||||||||||||||||
Sbjct: 5041 agggtgcagctgcataaggtgcttacgcgtggctatgatgatgcctcatggcccctccag 4982

                         
Query: 465  acacgccatatga 477
            |||||||||||||
Sbjct: 4981 acacgccatatga 4969



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                        
Query: 180  gggtgcaggaagctgcgggacaccgagttcttctcgcgccaggacccctacgtcatcatc 239
            ||||||||||||||| ||||||| ||||||||| |||| ||||| |||||||||  ||||
Sbjct: 6956 gggtgcaggaagctgagggacacggagttcttcacgcggcaggatccctacgtctgcatc 6897

                                                    
Query: 240  gactacgccaacaacaagctgcgcaccaggacatgcaccg 279
            || || |||| ||||||| | |||||| | || |||||||
Sbjct: 6896 gagtatgccaccaacaagttccgcacccgcacctgcaccg 6857
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>gb|AE009432.1| Agrobacterium tumefaciens str. C58 Ti plasmid, section 15 of 21 of
            the complete sequence
          Length = 6849

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 230  cgtcatcatcgactacgccaacaac 254
            |||||||||||||||||||| ||||
Sbjct: 5186 cgtcatcatcgactacgccatcaac 5162
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>gb|AE007940.1| Agrobacterium tumefaciens str. C58 plasmid Ti, section 18 of 20 of
           the complete sequence
          Length = 12492

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 230 cgtcatcatcgactacgccaacaac 254
           |||||||||||||||||||| ||||
Sbjct: 532 cgtcatcatcgactacgccatcaac 508
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>gb|AF010180.1| Agrobacterium tumefaciens plasmid pTiC58 TraI region, TraII region and
             acc operon, complete sequence; and unknown genes
          Length = 24708

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 230   cgtcatcatcgactacgccaacaac 254
             |||||||||||||||||||| ||||
Sbjct: 14969 cgtcatcatcgactacgccatcaac 14945
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>dbj|AB016260.1| Agrobacterium tumefaciens plasmid pTi-SAKURA, complete sequence
          Length = 206479

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 230    cgtcatcatcgactacgccaacaac 254
              |||||||||||||||||||| ||||
Sbjct: 112416 cgtcatcatcgactacgccatcaac 112392
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>gb|DQ265193.1| Plasmodium falciparum isolate Pf42_08 RIFIN (rif) gene, exon 2 and
           partial cds
          Length = 841

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 32  tcaagaagcaaaagtcgcttt 52
           |||||||||||||||||||||
Sbjct: 679 tcaagaagcaaaagtcgcttt 699
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>gb|AC161043.9| Mus musculus chromosome 1, clone wi1-483A16, complete sequence
          Length = 31683

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  aacaccgatgacttcattgg 397
            ||||||||||||||||||||
Sbjct: 7936 aacaccgatgacttcattgg 7917
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>gb|L41732.4|ABCLSDA Gluconacetobacter diazotrophicus levansucrase precursor (lsdA),
            levanase precursor (lsdB), pseudopilin G precursor
            (lsdG), prepilin peptidase and N-methyltransferase O
            (gspO), kinase E (lsdE), LsdF (lsdF), pseudopilin H
            precursor (lsdH), pseudopilin I precursor (lsdI),
            pseudopilin J precursor (lsdJ), LsdL (lsdL), LsdM (lsdM),
            and LsdN (lsdN) genes, complete cds; secretin D (lsdD)
            gene, partial cds; and unknown gene
          Length = 13897

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 215  gcgccaggacccctacgtcatcat 238
            ||||||||||||| ||||||||||
Sbjct: 7444 gcgccaggaccccgacgtcatcat 7467
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 126   ccgcgccgcccgcccatgtcgatc 149
             ||||||||||||||| ||||||||
Sbjct: 83170 ccgcgccgcccgcccgtgtcgatc 83193
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>gb|BC032721.1| Homo sapiens HIR histone cell cycle regulation defective homolog A
           (S. cerevisiae), mRNA (cDNA clone IMAGE:5505105),
           containing frame-shift errors
          Length = 2188

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 177 tcctcccgcgccgcccgccc 158
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>gb|AC005816.6| Mus musculus strain 129/Sv clone ct7-326b16 map 16, complete sequence
          Length = 136687

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   tcctcccgcgccgcccgccc 140
             ||||||||||||||||||||
Sbjct: 99213 tcctcccgcgccgcccgccc 99194
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>emb|X92590.1|MMHIRAPRT M.musculus mRNA for HIRA protein
          Length = 4018

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 148 tcctcccgcgccgcccgccc 129
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>emb|X75295.1|MMTUPLE1 M.musculus TUP1-like enhancer of split gene 1 (TUPLE1) mRNA
          Length = 1991

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 151 tcctcccgcgccgcccgccc 132
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 126     ccgcgccgcccgcccatgtcgatc 149
               ||||||||||||||| ||||||||
Sbjct: 1478724 ccgcgccgcccgcccgtgtcgatc 1478747
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>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete
              sequence
          Length = 216800

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 378    aacaccgatgacttcattgg 397
              ||||||||||||||||||||
Sbjct: 105647 aacaccgatgacttcattgg 105666
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>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
              complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    aacaccgatgacttcattgg 397
              ||||||||||||||||||||
Sbjct: 140272 aacaccgatgacttcattgg 140253
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>emb|X75296.1|HSTUPLE1 H.sapiens TUP1-like enhancer of split gene 1 (TUPLE1) mRNA
          Length = 3420

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 146 tcctcccgcgccgcccgccc 127
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>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   tcctcccgcgccgcccgccc 140
             ||||||||||||||||||||
Sbjct: 24600 tcctcccgcgccgcccgccc 24619
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>gb|AC079222.17| Mus musculus chromosome 1, clone RP22-292L24, complete sequence
          Length = 159700

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 378    aacaccgatgacttcattgg 397
              ||||||||||||||||||||
Sbjct: 117422 aacaccgatgacttcattgg 117441
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>gb|AC003062.2| Mouse Chromosome 16 Region Syntenic to DGCR BAC Clone b264n1, complete
             sequence
          Length = 89743

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   tcctcccgcgccgcccgccc 140
             ||||||||||||||||||||
Sbjct: 20238 tcctcccgcgccgcccgccc 20219
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>emb|BX255948.4| Zebrafish DNA sequence from clone CH211-250J1, complete sequence
          Length = 194257

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   gaacagcaacacaatcaaca 381
             ||||||||||||||||||||
Sbjct: 83494 gaacagcaacacaatcaaca 83475
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>emb|BX248087.9| Zebrafish DNA sequence from clone CH211-191J22, complete sequence
          Length = 150181

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   gaacagcaacacaatcaaca 381
             ||||||||||||||||||||
Sbjct: 43996 gaacagcaacacaatcaaca 43977
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>ref|XM_344057.2| PREDICTED: Rattus norvegicus similar to histone cell cycle
           regulation defective homolog A isoform 1 (LOC363849),
           mRNA
          Length = 4507

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 634 tcctcccgcgccgcccgccc 615
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>gb|AC133573.11| Mus musculus strain C57BL/6J clone rp23-139f17, complete sequence
          Length = 224138

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    tcctcccgcgccgcccgccc 140
              ||||||||||||||||||||
Sbjct: 113545 tcctcccgcgccgcccgccc 113564
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>gb|BC039835.1| Homo sapiens HIR histone cell cycle regulation defective homolog A
           (S. cerevisiae), mRNA (cDNA clone MGC:48803
           IMAGE:5491361), complete cds
          Length = 4024

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 134 tcctcccgcgccgcccgccc 115
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>gb|AF065246.1|AF065246 Agrobacterium tumefaciens strain Chry5 plasmid pTiChry5 scl
            pseudogene, complete sequence; conjugal transfer
            regulatory protein (traR) and VirH (virH) genes, complete
            cds; and unknown gene
          Length = 4168

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  cgtcatcatcgactacgcca 249
            ||||||||||||||||||||
Sbjct: 1107 cgtcatcatcgactacgcca 1126
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>gb|AC113264.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-357j7, complete
              sequence
          Length = 222589

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    tcctcccgcgccgcccgccc 140
              ||||||||||||||||||||
Sbjct: 114282 tcctcccgcgccgcccgccc 114263
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>gb|AC124442.3| Mus musculus BAC clone RP24-178G20 from 7, complete sequence
          Length = 177517

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    tcaacgtgtggaacagcaac 371
              ||||||||||||||||||||
Sbjct: 107495 tcaacgtgtggaacagcaac 107476
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>gb|BC060181.1| Mus musculus cDNA clone IMAGE:6831824, containing frame-shift
           errors
          Length = 4236

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 345 tcctcccgcgccgcccgccc 326
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>ref|NM_010435.2| Mus musculus histone cell cycle regulation defective homolog A (S.
           cerevisiae) (Hira), transcript variant 1, mRNA
          Length = 4553

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 661 tcctcccgcgccgcccgccc 642
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>emb|X91501.1|HSHIRAHGN H.sapiens HIRAHs gene
          Length = 1212

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 346 tcctcccgcgccgcccgccc 327
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>emb|X89887.1|HSHIRAGN1 Homo sapiens mRNA for WD repeat protein (HIRA)
          Length = 4018

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcctcccgcgccgcccgccc 140
           ||||||||||||||||||||
Sbjct: 139 tcctcccgcgccgcccgccc 120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,022,490
Number of Sequences: 3902068
Number of extensions: 3022490
Number of successful extensions: 56022
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55841
Number of HSP's gapped (non-prelim): 177
length of query: 516
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 493
effective length of database: 17,143,297,704
effective search space: 8451645768072
effective search space used: 8451645768072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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