ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast74a02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470414.1| Oryza sativa (japonica cultivar-group), mRNA Length = 846 Score = 375 bits (189), Expect = e-101 Identities = 282/313 (90%) Strand = Plus / Plus Query: 161 ccgaccccatggccgcaccagttccacgcgaagctgctgatggactacaagggcaacctg 220 ||||| ||||||||| |||||||||||||||||| |||||||| | | | ||||||||| Sbjct: 85 ccgacgccatggccggcccagttccacgcgaagctcctgatggagttccacggcaacctg 144 Query: 221 tcgctggccgacctgtggtacgactggccggggggccggaacctgcacgtcatccgctac 280 |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 145 tcgctggcggacctgtggtacgactggccggggggccgcaacctccacgtcatccgctac 204 Query: 281 cagctggccgccgacgcgccctactacgacgccgagtggaacaacggcacctccttcttc 340 ||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 205 cagctcgccgccgacgagcccttctacgacaacgagtggaacaacggcacctccttcttc 264 Query: 341 tacacgccggcgcgccgcgcctgccgctccgccgccgtcggggtcggcatcctgcggccc 400 ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 265 tacaccccggcccgccgcgcctgccgctccgccgccgtcggcgtcggcatcctgccccca 324 Query: 401 gactggctcgcccccggcgccgcctacctcggccgcgcccaagccgacggcttcgactgc 460 ||||||||| ||| ||| ||| ||||||||||||| || |||||||||||||||||| Sbjct: 325 aactggctcgtccctggctccgtctacctcggccgccaccccgccgacggcttcgactgc 384 Query: 461 cacgtctgggcca 473 ||||||||||||| Sbjct: 385 cacgtctgggcca 397
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 375 bits (189), Expect = e-101 Identities = 282/313 (90%) Strand = Plus / Minus Query: 161 ccgaccccatggccgcaccagttccacgcgaagctgctgatggactacaagggcaacctg 220 ||||| ||||||||| |||||||||||||||||| |||||||| | | | ||||||||| Sbjct: 35515581 ccgacgccatggccggcccagttccacgcgaagctcctgatggagttccacggcaacctg 35515522 Query: 221 tcgctggccgacctgtggtacgactggccggggggccggaacctgcacgtcatccgctac 280 |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 35515521 tcgctggcggacctgtggtacgactggccggggggccgcaacctccacgtcatccgctac 35515462 Query: 281 cagctggccgccgacgcgccctactacgacgccgagtggaacaacggcacctccttcttc 340 ||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 35515461 cagctcgccgccgacgagcccttctacgacaacgagtggaacaacggcacctccttcttc 35515402 Query: 341 tacacgccggcgcgccgcgcctgccgctccgccgccgtcggggtcggcatcctgcggccc 400 ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 35515401 tacaccccggcccgccgcgcctgccgctccgccgccgtcggcgtcggcatcctgccccca 35515342 Query: 401 gactggctcgcccccggcgccgcctacctcggccgcgcccaagccgacggcttcgactgc 460 ||||||||| ||| ||| ||| ||||||||||||| || |||||||||||||||||| Sbjct: 35515341 aactggctcgtccctggctccgtctacctcggccgccaccccgccgacggcttcgactgc 35515282 Query: 461 cacgtctgggcca 473 ||||||||||||| Sbjct: 35515281 cacgtctgggcca 35515269 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 cccccggcgccgcctacctcggcc 434 |||||| ||||||||||||||||| Sbjct: 22025104 cccccgccgccgcctacctcggcc 22025081
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 375 bits (189), Expect = e-101 Identities = 282/313 (90%) Strand = Plus / Minus Query: 161 ccgaccccatggccgcaccagttccacgcgaagctgctgatggactacaagggcaacctg 220 ||||| ||||||||| |||||||||||||||||| |||||||| | | | ||||||||| Sbjct: 35605653 ccgacgccatggccggcccagttccacgcgaagctcctgatggagttccacggcaacctg 35605594 Query: 221 tcgctggccgacctgtggtacgactggccggggggccggaacctgcacgtcatccgctac 280 |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 35605593 tcgctggcggacctgtggtacgactggccggggggccgcaacctccacgtcatccgctac 35605534 Query: 281 cagctggccgccgacgcgccctactacgacgccgagtggaacaacggcacctccttcttc 340 ||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 35605533 cagctcgccgccgacgagcccttctacgacaacgagtggaacaacggcacctccttcttc 35605474 Query: 341 tacacgccggcgcgccgcgcctgccgctccgccgccgtcggggtcggcatcctgcggccc 400 ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 35605473 tacaccccggcccgccgcgcctgccgctccgccgccgtcggcgtcggcatcctgccccca 35605414 Query: 401 gactggctcgcccccggcgccgcctacctcggccgcgcccaagccgacggcttcgactgc 460 ||||||||| ||| ||| ||| ||||||||||||| || |||||||||||||||||| Sbjct: 35605413 aactggctcgtccctggctccgtctacctcggccgccaccccgccgacggcttcgactgc 35605354 Query: 461 cacgtctgggcca 473 ||||||||||||| Sbjct: 35605353 cacgtctgggcca 35605341 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 cccccggcgccgcctacctcggcc 434 |||||| ||||||||||||||||| Sbjct: 22018133 cccccgccgccgcctacctcggcc 22018110
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 375 bits (189), Expect = e-101 Identities = 282/313 (90%) Strand = Plus / Minus Query: 161 ccgaccccatggccgcaccagttccacgcgaagctgctgatggactacaagggcaacctg 220 ||||| ||||||||| |||||||||||||||||| |||||||| | | | ||||||||| Sbjct: 48544 ccgacgccatggccggcccagttccacgcgaagctcctgatggagttccacggcaacctg 48485 Query: 221 tcgctggccgacctgtggtacgactggccggggggccggaacctgcacgtcatccgctac 280 |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 48484 tcgctggcggacctgtggtacgactggccggggggccgcaacctccacgtcatccgctac 48425 Query: 281 cagctggccgccgacgcgccctactacgacgccgagtggaacaacggcacctccttcttc 340 ||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 48424 cagctcgccgccgacgagcccttctacgacaacgagtggaacaacggcacctccttcttc 48365 Query: 341 tacacgccggcgcgccgcgcctgccgctccgccgccgtcggggtcggcatcctgcggccc 400 ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 48364 tacaccccggcccgccgcgcctgccgctccgccgccgtcggcgtcggcatcctgccccca 48305 Query: 401 gactggctcgcccccggcgccgcctacctcggccgcgcccaagccgacggcttcgactgc 460 ||||||||| ||| ||| ||| ||||||||||||| || |||||||||||||||||| Sbjct: 48304 aactggctcgtccctggctccgtctacctcggccgccaccccgccgacggcttcgactgc 48245 Query: 461 cacgtctgggcca 473 ||||||||||||| Sbjct: 48244 cacgtctgggcca 48232
>dbj|AK101366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035L04, full insert sequence Length = 916 Score = 375 bits (189), Expect = e-101 Identities = 282/313 (90%) Strand = Plus / Plus Query: 161 ccgaccccatggccgcaccagttccacgcgaagctgctgatggactacaagggcaacctg 220 ||||| ||||||||| |||||||||||||||||| |||||||| | | | ||||||||| Sbjct: 97 ccgacgccatggccggcccagttccacgcgaagctcctgatggagttccacggcaacctg 156 Query: 221 tcgctggccgacctgtggtacgactggccggggggccggaacctgcacgtcatccgctac 280 |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 157 tcgctggcggacctgtggtacgactggccggggggccgcaacctccacgtcatccgctac 216 Query: 281 cagctggccgccgacgcgccctactacgacgccgagtggaacaacggcacctccttcttc 340 ||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 217 cagctcgccgccgacgagcccttctacgacaacgagtggaacaacggcacctccttcttc 276 Query: 341 tacacgccggcgcgccgcgcctgccgctccgccgccgtcggggtcggcatcctgcggccc 400 ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 277 tacaccccggcccgccgcgcctgccgctccgccgccgtcggcgtcggcatcctgccccca 336 Query: 401 gactggctcgcccccggcgccgcctacctcggccgcgcccaagccgacggcttcgactgc 460 ||||||||| ||| ||| ||| ||||||||||||| || |||||||||||||||||| Sbjct: 337 aactggctcgtccctggctccgtctacctcggccgccaccccgccgacggcttcgactgc 396 Query: 461 cacgtctgggcca 473 ||||||||||||| Sbjct: 397 cacgtctgggcca 409
>ref|XM_476950.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1279 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcgcccaa 442 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 392 gtcggcatcctgccccccgactggctcgccgccggcgccgcctacctcggccgcgaggcc 451 Query: 443 gccgacggcttcgactgccacgtctgg 469 | |||||||||||||||||||||||| Sbjct: 452 gttgacggcttcgactgccacgtctgg 478 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 304 ctacgacgccgagtggaacaacggcacctcct 335 |||||||| |||||||| |||||||||||||| Sbjct: 319 ctacgacgtcgagtggaccaacggcacctcct 350
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcgcccaa 442 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 4808373 gtcggcatcctgccccccgactggctcgccgccggcgccgcctacctcggccgcgaggcc 4808314 Query: 443 gccgacggcttcgactgccacgtctgg 469 | |||||||||||||||||||||||| Sbjct: 4808313 gttgacggcttcgactgccacgtctgg 4808287 Score = 69.9 bits (35), Expect = 7e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcg 437 |||||| |||||| ||||||||||||||| ||||||||| |||||||||||||| Sbjct: 4805553 gtcggcctcctgccccccgactggctcgccgccggcgccgtctacctcggccgcg 4805607 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 304 ctacgacgccgagtggaacaacggcacctcct 335 |||||||| |||||||| |||||||||||||| Sbjct: 4808446 ctacgacgtcgagtggaccaacggcacctcct 4808415 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 304 ctacgacgccgagtggaacaacggcacctccttct 338 |||||||| ||||||| ||||||||||| |||||| Sbjct: 17082849 ctacgacgtcgagtgggacaacggcaccaccttct 17082883 Score = 42.1 bits (21), Expect = 1.6 Identities = 83/103 (80%), Gaps = 3/103 (2%) Strand = Plus / Plus Query: 239 tacgactggccggggggccggaacctgcacgtcatccgctaccagctggccgccgacgcg 298 |||||||||||| |||| || ||||| || |||||||| |||||| ||| |||| || Sbjct: 4805418 tacgactggccgcgggggcgcaacctcaacctcatccgcggccagctctccggcgacccg 4805477 Query: 299 ccctactacgacgccgagtggaacaacggcacctccttcttct 341 | |||||||| |||||||| ||| |||||||||| ||||| Sbjct: 4805478 ac---ctacgacgtcgagtggaccaatggcacctcctacttct 4805517
>dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0084L07 Length = 127992 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcgcccaa 442 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 126283 gtcggcatcctgccccccgactggctcgccgccggcgccgcctacctcggccgcgaggcc 126224 Query: 443 gccgacggcttcgactgccacgtctgg 469 | |||||||||||||||||||||||| Sbjct: 126223 gttgacggcttcgactgccacgtctgg 126197 Score = 69.9 bits (35), Expect = 7e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcg 437 |||||| |||||| ||||||||||||||| ||||||||| |||||||||||||| Sbjct: 123463 gtcggcctcctgccccccgactggctcgccgccggcgccgtctacctcggccgcg 123517 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 304 ctacgacgccgagtggaacaacggcacctcct 335 |||||||| |||||||| |||||||||||||| Sbjct: 126356 ctacgacgtcgagtggaccaacggcacctcct 126325 Score = 42.1 bits (21), Expect = 1.6 Identities = 83/103 (80%), Gaps = 3/103 (2%) Strand = Plus / Plus Query: 239 tacgactggccggggggccggaacctgcacgtcatccgctaccagctggccgccgacgcg 298 |||||||||||| |||| || ||||| || |||||||| |||||| ||| |||| || Sbjct: 123328 tacgactggccgcgggggcgcaacctcaacctcatccgcggccagctctccggcgacccg 123387 Query: 299 ccctactacgacgccgagtggaacaacggcacctccttcttct 341 | |||||||| |||||||| ||| |||||||||| ||||| Sbjct: 123388 ac---ctacgacgtcgagtggaccaatggcacctcctacttct 123427
>dbj|AP005877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0002L09 Length = 146343 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcgcccaa 442 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 82886 gtcggcatcctgccccccgactggctcgccgccggcgccgcctacctcggccgcgaggcc 82827 Query: 443 gccgacggcttcgactgccacgtctgg 469 | |||||||||||||||||||||||| Sbjct: 82826 gttgacggcttcgactgccacgtctgg 82800 Score = 69.9 bits (35), Expect = 7e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcg 437 |||||| |||||| ||||||||||||||| ||||||||| |||||||||||||| Sbjct: 80066 gtcggcctcctgccccccgactggctcgccgccggcgccgtctacctcggccgcg 80120 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 304 ctacgacgccgagtggaacaacggcacctcct 335 |||||||| |||||||| |||||||||||||| Sbjct: 82959 ctacgacgtcgagtggaccaacggcacctcct 82928 Score = 42.1 bits (21), Expect = 1.6 Identities = 83/103 (80%), Gaps = 3/103 (2%) Strand = Plus / Plus Query: 239 tacgactggccggggggccggaacctgcacgtcatccgctaccagctggccgccgacgcg 298 |||||||||||| |||| || ||||| || |||||||| |||||| ||| |||| || Sbjct: 79931 tacgactggccgcgggggcgcaacctcaacctcatccgcggccagctctccggcgacccg 79990 Query: 299 ccctactacgacgccgagtggaacaacggcacctccttcttct 341 | |||||||| |||||||| ||| |||||||||| ||||| Sbjct: 79991 ac---ctacgacgtcgagtggaccaatggcacctcctacttct 80030
>dbj|AK071758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112J01, full insert sequence Length = 1279 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcgcccaa 442 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 392 gtcggcatcctgccccccgactggctcgccgccggcgccgcctacctcggccgcgaggcc 451 Query: 443 gccgacggcttcgactgccacgtctgg 469 | |||||||||||||||||||||||| Sbjct: 452 gttgacggcttcgactgccacgtctgg 478 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 304 ctacgacgccgagtggaacaacggcacctcct 335 |||||||| |||||||| |||||||||||||| Sbjct: 319 ctacgacgtcgagtggaccaacggcacctcct 350
>gb|AY105419.1| Zea mays PCO110580 mRNA sequence Length = 1045 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 389 atcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcgcccaagccgac 448 ||||||| ||| |||||||||||| ||||||||| ||| |||||||||| || | |||| Sbjct: 420 atcctgccgcctgactggctcgccgccggcgccgtctatctcggccgcgagcacgtcgac 479 Query: 449 ggcttcgactgccac 463 ||||||||||||||| Sbjct: 480 ggcttcgactgccac 494 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 304 ctacgacgccgagtggaacaacggcacctccttcttct 341 |||||||| |||||||| |||||||||||||| ||||| Sbjct: 341 ctacgacgtcgagtggaccaacggcacctcctacttct 378
>ref|XM_476949.1| Oryza sativa (japonica cultivar-group), mRNA Length = 869 Score = 69.9 bits (35), Expect = 7e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcg 437 |||||| |||||| ||||||||||||||| ||||||||| |||||||||||||| Sbjct: 344 gtcggcctcctgccccccgactggctcgccgccggcgccgtctacctcggccgcg 398 Score = 42.1 bits (21), Expect = 1.6 Identities = 83/103 (80%), Gaps = 3/103 (2%) Strand = Plus / Plus Query: 239 tacgactggccggggggccggaacctgcacgtcatccgctaccagctggccgccgacgcg 298 |||||||||||| |||| || ||||| || |||||||| |||||| ||| |||| || Sbjct: 209 tacgactggccgcgggggcgcaacctcaacctcatccgcggccagctctccggcgacccg 268 Query: 299 ccctactacgacgccgagtggaacaacggcacctccttcttct 341 | |||||||| |||||||| ||| |||||||||| ||||| Sbjct: 269 ac---ctacgacgtcgagtggaccaatggcacctcctacttct 308
>dbj|AK099833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106C07, full insert sequence Length = 869 Score = 69.9 bits (35), Expect = 7e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 383 gtcggcatcctgcggcccgactggctcgcccccggcgccgcctacctcggccgcg 437 |||||| |||||| ||||||||||||||| ||||||||| |||||||||||||| Sbjct: 344 gtcggcctcctgccccccgactggctcgccgccggcgccgtctacctcggccgcg 398 Score = 42.1 bits (21), Expect = 1.6 Identities = 83/103 (80%), Gaps = 3/103 (2%) Strand = Plus / Plus Query: 239 tacgactggccggggggccggaacctgcacgtcatccgctaccagctggccgccgacgcg 298 |||||||||||| |||| || ||||| || |||||||| |||||| ||| |||| || Sbjct: 209 tacgactggccgcgggggcgcaacctcaacctcatccgcggccagctctccggcgacccg 268 Query: 299 ccctactacgacgccgagtggaacaacggcacctccttcttct 341 | |||||||| |||||||| ||| |||||||||| ||||| Sbjct: 269 ac---ctacgacgtcgagtggaccaatggcacctcctacttct 308
>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0571D04 Length = 149302 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 304 ctacgacgccgagtggaacaacggcacctccttct 338 |||||||| ||||||| ||||||||||| |||||| Sbjct: 35975 ctacgacgtcgagtgggacaacggcaccaccttct 36009
>dbj|AK068238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149J12, full insert sequence Length = 863 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 304 ctacgacgccgagtggaacaacggcacctccttct 338 |||||||| ||||||| ||||||||||| |||||| Sbjct: 263 ctacgacgtcgagtgggacaacggcaccaccttct 297
>gb|L12139.1|RABA1AT Oryctolagus cuniculus alpha-1-antitrypsin mRNA, complete cds Length = 1353 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 195 tgctgatggactacaagggcaac 217 ||||||||||||||||||||||| Sbjct: 832 tgctgatggactacaagggcaac 854
>dbj|AB015164.1| Oryctolagus cuniculus mRNA for ATS-22, complete cds Length = 1488 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 195 tgctgatggactacaagggcaac 217 ||||||||||||||||||||||| Sbjct: 967 tgctgatggactacaagggcaac 989
>ref|NM_117484.1| Arabidopsis thaliana transferase, transferring glycosyl groups AT4G14100 mRNA, complete cds Length = 773 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 161 ccgaccccatggccgcaccagttccacgcg 190 ||||| |||||||| ||||||||||||||| Sbjct: 117 ccgacgccatggccacaccagttccacgcg 146
>emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 0 Length = 200576 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 161 ccgaccccatggccgcaccagttccacgcg 190 ||||| |||||||| ||||||||||||||| Sbjct: 78728 ccgacgccatggccacaccagttccacgcg 78757
>emb|X70409.1|ATA6GLUA A.thaliana gene A6 for anther-specific glucanase Length = 2701 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Minus Query: 161 ccgaccccatggccgcaccagttccacgcg 190 ||||| |||||||| ||||||||||||||| Sbjct: 338 ccgacgccatggccacaccagttccacgcg 309
>emb|AL161538.2|ATCHRIV38 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 38 Length = 198944 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 161 ccgaccccatggccgcaccagttccacgcg 190 ||||| |||||||| ||||||||||||||| Sbjct: 18276 ccgacgccatggccacaccagttccacgcg 18305
>gb|BT024590.1| Arabidopsis thaliana At4g14100 mRNA, complete cds Length = 621 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 161 ccgaccccatggccgcaccagttccacgcg 190 ||||| |||||||| ||||||||||||||| Sbjct: 88 ccgacgccatggccacaccagttccacgcg 117
>gb|AY087398.1| Arabidopsis thaliana clone 34967 mRNA, complete sequence Length = 773 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 161 ccgaccccatggccgcaccagttccacgcg 190 ||||| |||||||| ||||||||||||||| Sbjct: 117 ccgacgccatggccacaccagttccacgcg 146
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 346 gccggcgcgccgcgcctgccgctccgccgc 375 ||||||||| |||||| ||||||||||||| Sbjct: 1002652 gccggcgcggcgcgccggccgctccgccgc 1002681 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 ttcttctacacgccggcgcgccgc 358 |||||| ||||||||||||||||| Sbjct: 1968661 ttcttcaacacgccggcgcgccgc 1968638 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ggctcgcccccggcgccgcc 424 |||||||||||||||||||| Sbjct: 1403594 ggctcgcccccggcgccgcc 1403613
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 416 ggcgccgcctacctcggccgcgccca 441 ||||||||| |||||||||||||||| Sbjct: 986519 ggcgccgcccacctcggccgcgccca 986494
>dbj|AK176539.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-06-B02 Length = 786 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 161 ccgaccccatggccgcaccagttccacgcg 190 ||||| |||||||| ||||||||||||||| Sbjct: 114 ccgacgccatggccacaccagttccacgcg 143
>dbj|AK175690.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-21-C20 Length = 742 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 161 ccgaccccatggccgcaccagttccacgcg 190 ||||| |||||||| ||||||||||||||| Sbjct: 119 ccgacgccatggccacaccagttccacgcg 148
>dbj|AB076402.1| Halomonas halodenitrificans nitrate reductase gene cluster, complete cds Length = 14936 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 323 aacggcacctccttcttctaca 344 |||||||||||||||||||||| Sbjct: 11400 aacggcacctccttcttctaca 11421
>ref|XM_418715.1| PREDICTED: Gallus gallus similar to chromosome 7 open reading frame 30 (LOC420616), mRNA Length = 1963 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 352 gcgccgcgcctgccgctccgccgcc 376 |||||||| |||||||||||||||| Sbjct: 133 gcgccgcggctgccgctccgccgcc 109
>ref|XM_600662.2| PREDICTED: Bos taurus similar to cyclin M4 (LOC522382), mRNA Length = 2628 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 353 cgccgcgcctgccgctccgccgccg 377 |||||| |||||||||||||||||| Sbjct: 263 cgccgctcctgccgctccgccgccg 239
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 345 cgccggcgcgccgcgcctgccgctc 369 ||||| ||||||||||||||||||| Sbjct: 2419 cgccgtcgcgccgcgcctgccgctc 2443
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 ccggcgccgcctacctcggccgcgc 438 ||||||||||| ||||||||||||| Sbjct: 130882 ccggcgccgccgacctcggccgcgc 130858
>gb|AE011943.1| Xanthomonas axonopodis pv. citri str. 306, section 321 of 469 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 ccagctggccgccgacgcgcc 300 ||||||||||||||||||||| Sbjct: 7687 ccagctggccgccgacgcgcc 7707
>dbj|AP000889.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-101M8, complete sequence Length = 163047 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 ccgcctttcccactcctggcc 79 ||||||||||||||||||||| Sbjct: 83127 ccgcctttcccactcctggcc 83107
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cgcctgccgctccgccgccg 377 |||||||||||||||||||| Sbjct: 453563 cgcctgccgctccgccgccg 453544
>ref|NM_184805.1| Oryza sativa (japonica cultivar-group), mRNA Length = 696 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 cccccggcgccgcctacctcggcc 434 |||||| ||||||||||||||||| Sbjct: 613 cccccgccgccgcctacctcggcc 636
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gcgcctgccgctccgccgcc 376 |||||||||||||||||||| Sbjct: 158495 gcgcctgccgctccgccgcc 158476
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 gcaacctgtcgctggccgac 232 |||||||||||||||||||| Sbjct: 1997429 gcaacctgtcgctggccgac 1997410
>ref|XM_425289.1| PREDICTED: Gallus gallus similar to angiotensin receptor related protein (LOC427714), mRNA Length = 933 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 ggcaacctgtcgctggccgacctg 235 ||||||||| |||||||||||||| Sbjct: 223 ggcaacctggcgctggccgacctg 246
>ref|XM_610749.2| PREDICTED: Bos taurus thrombomodulin (THBD), mRNA Length = 2982 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gctaccagctggccgccgac 295 |||||||||||||||||||| Sbjct: 1904 gctaccagctggccgccgac 1923
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 gcaacctgtcgctggccgac 232 |||||||||||||||||||| Sbjct: 1434774 gcaacctgtcgctggccgac 1434793
>emb|CR956364.13| Pig DNA sequence from clone PigI-52G3 on chromosome 7, complete sequence Length = 105198 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 409 cgcccccggcgccgcctacctcggccgcgccc 440 ||||| |||| ||||| ||||||||||||||| Sbjct: 72037 cgcccgcggccccgccaacctcggccgcgccc 72006
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cacgccggcgcgccgcgcct 362 |||||||||||||||||||| Sbjct: 4545198 cacgccggcgcgccgcgcct 4545179
>emb|AL356415.26| Human DNA sequence from clone RP3-337D23 on chromosome 6q23.3-25.3 Contains the 5' end of tomosyn (LOC134957) (contains FLJ30922), part of a putative novel gene, a putative novel gene and a CpG island, complete sequence Length = 140999 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ggctcgcccccggcgccgcc 424 |||||||||||||||||||| Sbjct: 95592 ggctcgcccccggcgccgcc 95611
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 ggcgccgcctacctcggccgcgcc 439 ||||||||||||| |||||||||| Sbjct: 244710 ggcgccgcctaccgcggccgcgcc 244733
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 cgccggcgcgccgcgcctgc 364 |||||||||||||||||||| Sbjct: 222978 cgccggcgcgccgcgcctgc 222959
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 acctgtcgctggccgacctg 235 |||||||||||||||||||| Sbjct: 224865 acctgtcgctggccgacctg 224846
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 acctgtcgctggccgacctg 235 |||||||||||||||||||| Sbjct: 137335 acctgtcgctggccgacctg 137316
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 acctgtcgctggccgacctg 235 |||||||||||||||||||| Sbjct: 87679 acctgtcgctggccgacctg 87698
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 cgccggcgcgccgcgcctgc 364 |||||||||||||||||||| Sbjct: 315642 cgccggcgcgccgcgcctgc 315623
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 ccgccgccgtcggggtcggc 388 |||||||||||||||||||| Sbjct: 221280 ccgccgccgtcggggtcggc 221299
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 gcaacctgtcgctggccgac 232 |||||||||||||||||||| Sbjct: 1306735 gcaacctgtcgctggccgac 1306754
>ref|XM_692283.1| PREDICTED: Danio rerio similar to Nuclear factor NF-kappa-B p105 subunit (DNA-binding factor KBF1) (EBP-1) (NF-kappa-B1 p84/NF-kappa-B1 p98) (LOC568922), mRNA Length = 709 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gggcaacctgtcgctggccg 230 |||||||||||||||||||| Sbjct: 8 gggcaacctgtcgctggccg 27
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgctaccagctggccgccgacgcg 298 |||||| ||||||||||||||||| Sbjct: 22554384 cgctacgagctggccgccgacgcg 22554407
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 cccccggcgccgcctacctcggcc 434 |||||| ||||||||||||||||| Sbjct: 488905 cccccgccgccgcctacctcggcc 488882
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 cgccgccgtcggggtcggca 389 |||||||||||||||||||| Sbjct: 23284589 cgccgccgtcggggtcggca 23284570
>dbj|AB166766.1| Eucalyptus perriniana EPGT-2 mRNA for monoterpene glucosyltransferase, complete cds Length = 1984 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 tcttctacacgccggcgcgc 355 |||||||||||||||||||| Sbjct: 563 tcttctacacgccggcgcgc 582
>dbj|AB166765.1| Eucalyptus perriniana EPGT-1 mRNA for monoterpene glucosyltransferase, complete cds Length = 1956 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 tcttctacacgccggcgcgc 355 |||||||||||||||||||| Sbjct: 537 tcttctacacgccggcgcgc 556
>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete sequence Length = 167397 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 cccccggcgccgcctacctcggcc 434 |||||| ||||||||||||||||| Sbjct: 123178 cccccgccgccgcctacctcggcc 123201
>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0514G12 Length = 138929 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 cccccggcgccgcctacctcggcc 434 |||||| ||||||||||||||||| Sbjct: 34413 cccccgccgccgcctacctcggcc 34390
>dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1331F11 Length = 132205 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgctaccagctggccgccgacgcg 298 |||||| ||||||||||||||||| Sbjct: 69585 cgctacgagctggccgccgacgcg 69608
>dbj|AP005384.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_D02 Length = 112773 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 cgccgccgtcggggtcggca 389 |||||||||||||||||||| Sbjct: 43735 cgccgccgtcggggtcggca 43716
>dbj|AK109639.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E07, full insert sequence Length = 1683 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgctaccagctggccgccgacgcg 298 |||||| ||||||||||||||||| Sbjct: 243 cgctacgagctggccgccgacgcg 266
>dbj|AK073603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052N01, full insert sequence Length = 1413 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 cccccggcgccgcctacctcggcc 434 |||||| ||||||||||||||||| Sbjct: 418 cccccgccgccgcctacctcggcc 441
>dbj|AK072621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130B22, full insert sequence Length = 2600 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgctaccagctggccgccgacgcg 298 |||||| ||||||||||||||||| Sbjct: 384 cgctacgagctggccgccgacgcg 407
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cctgtcgctggccgacctgt 236 |||||||||||||||||||| Sbjct: 1308629 cctgtcgctggccgacctgt 1308648
>gb|AY450930.1| Chlamydomonas reinhardtii plus agglutinin (SAG1) gene, complete cds; and unknown gene Length = 18555 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cgcctgccgctccgccgccg 377 |||||||||||||||||||| Sbjct: 13582 cgcctgccgctccgccgccg 13563
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 acgccggcgcgccgcgcctg 363 |||||||||||||||||||| Sbjct: 496496 acgccggcgcgccgcgcctg 496477
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aacggcacctccttcttcta 342 |||||||||||||||||||| Sbjct: 4150944 aacggcacctccttcttcta 4150925
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ccgctccgccgccgtcgggg 383 |||||||||||||||||||| Sbjct: 92794 ccgctccgccgccgtcgggg 92813
>gb|M14657.1|BOVTMD Bovine thrombomodulin mRNA, 3' end Length = 2854 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gctaccagctggccgccgac 295 |||||||||||||||||||| Sbjct: 260 gctaccagctggccgccgac 279 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,397,824 Number of Sequences: 3902068 Number of extensions: 2397824 Number of successful extensions: 58046 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55162 Number of HSP's gapped (non-prelim): 2884 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
