>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 23/81 (28%), Positives = 31/81 (38%)
 Frame = +1

Query: 10   TINRLTLSVPNPTTSTITSVLPVPRFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXX 189
            T + LT S  +PTTS ITS +     P  S +S +  P T+  +P               
Sbjct: 1414 TTSPLTSSATSPTTSHITSTVSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTST 1473

Query: 190  TSIPRRSTAPRHSRDRRSPIP 252
            T     S  P  +    SP P
Sbjct: 1474 T-----SPTPSPTTSTTSPTP 1489

>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 666

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 192 FYPPTEHGTAPQPGSQVSYPPMPKAMDG 275
           ++PP E    P P SQ  YP MP A+ G
Sbjct: 211 YWPPAELQYLPPPESQYGYPGMPPALQG 238

>CPC_CUCSA (P29602) Cucumber peeling cupredoxin (CPC) (Stellacyanin)|
          Length = 137

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 1   NIITINRLTLSVPNPTTSTITSVLPVPRFPCPSES 105
           N++  N  T+S+P P++S  +SV+P P  P PS S
Sbjct: 104 NVVAANA-TVSMPPPSSSPPSSVMPPPVMPPPSPS 137

>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K115 Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 646

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 192 FYPPTEHGTAPQPGSQVSYPPMPKAMDG 275
           ++PP E    P P SQ  YP MP A  G
Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPAPQG 238

>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K113 Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 192 FYPPTEHGTAPQPGSQVSYPPMPKAMDG 275
           ++PP E    P P SQ  YP MP A  G
Sbjct: 211 YWPPAELQYQPPPESQYGYPGMPPAPQG 238

>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag
           protein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 192 FYPPTEHGTAPQPGSQVSYPPMPKAMDG 275
           ++PP E    P P SQ  YP MP A  G
Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPAPQG 238

>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108
           Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 192 FYPPTEHGTAPQPGSQVSYPPMPKAMDG 275
           ++PP E    P P SQ  YP MP A  G
Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPAPQG 238

>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 192 FYPPTEHGTAPQPGSQVSYPPMPKAMDG 275
           ++PP E    P P SQ  YP MP A  G
Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPAPQG 238

>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag
           protein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 192 FYPPTEHGTAPQPGSQVSYPPMPKAMDG 275
           ++PP E    P P SQ  YP MP A  G
Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPAPQG 238

>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K101 Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 192 FYPPTEHGTAPQPGSQVSYPPMPKAMDG 275
           ++PP E    P P SQ  YP MP A  G
Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPAPQG 238

>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag
           protein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 192 FYPPTEHGTAPQPGSQVSYPPMPKAMDG 275
           ++PP E    P P SQ  YP MP A  G
Sbjct: 211 YWPPAELQYRPPPESQYGYPGMPPAPQG 238

>PLS1_HUMAN (O15162) Phospholipid scramblase 1 (PL scramblase 1)|
           (Ca(2+)-dependent phospholipid scramblase 1)
           (Erythrocyte phospholipid scramblase) (MmTRA1b)
          Length = 318

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = +3

Query: 195 YPPTEH----GTAPQPGSQVSYPPMPKAMDG 275
           YPPT      G +  PG QVSYPP P    G
Sbjct: 25  YPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG 55

>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556|
          Length = 348

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 27/71 (38%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +1

Query: 64  SVLPVPRFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXXTSIPRRST--APR-HSRD 234
           S+LP PR P  S SS       A A P               T +PRR+T  APR  SR 
Sbjct: 230 SLLPAPRPPASSASSPQ---AAAPAAP-------------SATRLPRRTTPSAPRPSSRP 273

Query: 235 RRSPIPRCQRP 267
            R PIP  + P
Sbjct: 274 ARPPIPAARPP 284

>PXK_RAT (Q4FZZ1) PX domain-containing protein kinase-like protein|
           (Modulator of Na,K-ATPase) (MONaKA)
          Length = 580

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 198 PPTEHGTAPQPGSQVSYPPMPKAMDG 275
           PP      P PG+++  PP+P+A++G
Sbjct: 523 PPPPPPAGPSPGTEMPAPPLPQAVNG 548

>GUC2D_HUMAN (Q02846) Retinal guanylyl cyclase 1 precursor (EC 4.6.1.2)|
           (Guanylate cyclase 2D, retinal) (RETGC-1) (Rod outer
           segment membrane guanylate cyclase) (ROS-GC)
          Length = 1103

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -2

Query: 276 GHPWPLASGDRRPAIPAVARCRAPSGDRSEALLPRPVAQARLAVWCSPCRPWLLAGGAL 100
           G PW  A G   PA+        P+ D   ALL R    AR+A+  +P   W+ AG +L
Sbjct: 151 GCPWTQAEGTTAPAV-------TPAADALYALL-RAFGWARVALVTAPQDLWVEAGRSL 201

>HXC10_MOUSE (P31257) Homeobox protein Hox-C10 (Hox-3.6)|
          Length = 342

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 198 PPTEHGTAPQPGSQVSYPPMPKA 266
           P TEH  +PQ G +VS+P  PK+
Sbjct: 182 PRTEHLESPQLGGKVSFPETPKS 204

>PKN2_CORGL (Q8NU97) Serine/threonine protein kinases pknA (EC 2.7.11.1)|
          Length = 469

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/59 (30%), Positives = 21/59 (35%)
 Frame = +1

Query: 43  PTTSTITSVLPVPRFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXXTSIPRRSTAP 219
           PT ST T        P  SE STS +P T   T                 S+P  + AP
Sbjct: 393 PTRSTFTEPETTSHRPTTSEESTSEEPTTEAPTSSRTVPQIPTSTPRTSASVPVETNAP 451

>ATS16_MOUSE (Q69Z28) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 16) (ADAM-TS
            16) (ADAM-TS16)
          Length = 1222

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 21/76 (27%), Positives = 26/76 (34%)
 Frame = +1

Query: 40   NPTTSTITSVLPVPRFPCPSESSTS*QPWTARATPXXXXXXXXXXXXXXXTSIPRRSTAP 219
            NP T  +T ++P    PCPS  S     W+                     S P R T  
Sbjct: 908  NPKTRPVTGLVPCKVSPCPSSWSVG--NWSV----------CSRTCGGGTQSRPVRCTRR 955

Query: 220  RHSRDRRSPIPRCQRP 267
             H RD   P   C +P
Sbjct: 956  AHYRDESIPASLCPQP 971

>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 31  SVPNPTTSTITSVLPVPRFPCPSE 102
           + P  TTST T+V PVP  P P E
Sbjct: 596 TAPVTTTSTATTVAPVPVAPPPEE 619

>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 149 ANRACATGRGRSASLLSPDGARHRATAGIAGLLSPDAKGH 268
           ++R  ATGRG+++S +S  G R     G +G  + D++GH
Sbjct: 394 SSRHSATGRGQASSAVSDRGHR-----GSSGSQASDSEGH 428


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,004,404
Number of Sequences: 219361
Number of extensions: 635597
Number of successful extensions: 3696
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3670
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)