ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast73h09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 119 bits (60), Expect = 4e-24 Identities = 104/119 (87%) Strand = Plus / Plus Query: 131 ggggtggcgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgcc 190 |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| | Sbjct: 7463229 ggggtggcgccgttcgtggcgaagacgtaccggatggtggacgacccggccaccgacggc 7463288 Query: 191 gtcgtcgcgtgggggccggccggcaacagcttcgtcgncgccgacccattctccttctc 249 ||| |||| ||||| || | ||||||||||||||| ||||||||| ||| ||||||| Sbjct: 7463289 gtcatcgcctggggcagggacagcaacagcttcgtcgtcgccgaccccttcgccttctc 7463347 Score = 48.1 bits (24), Expect = 0.013 Identities = 36/40 (90%) Strand = Plus / Plus Query: 137 gcgccgttcgtggccaagacgtacgggatggtggacgacc 176 ||||||||| || ||||||||||| |||||||||||||| Sbjct: 17527963 gcgccgttcctgctcaagacgtacgagatggtggacgacc 17528002
>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1705_E12 Length = 191416 Score = 119 bits (60), Expect = 4e-24 Identities = 104/119 (87%) Strand = Plus / Plus Query: 131 ggggtggcgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgcc 190 |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| | Sbjct: 56935 ggggtggcgccgttcgtggcgaagacgtaccggatggtggacgacccggccaccgacggc 56994 Query: 191 gtcgtcgcgtgggggccggccggcaacagcttcgtcgncgccgacccattctccttctc 249 ||| |||| ||||| || | ||||||||||||||| ||||||||| ||| ||||||| Sbjct: 56995 gtcatcgcctggggcagggacagcaacagcttcgtcgtcgccgaccccttcgccttctc 57053
>dbj|AK106488.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A02, full insert sequence Length = 1392 Score = 119 bits (60), Expect = 4e-24 Identities = 104/119 (87%) Strand = Plus / Plus Query: 131 ggggtggcgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgcc 190 |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| | Sbjct: 102 ggggtggcgccgttcgtggcgaagacgtaccggatggtggacgacccggccaccgacggc 161 Query: 191 gtcgtcgcgtgggggccggccggcaacagcttcgtcgncgccgacccattctccttctc 249 ||| |||| ||||| || | ||||||||||||||| ||||||||| ||| ||||||| Sbjct: 162 gtcatcgcctggggcagggacagcaacagcttcgtcgtcgccgaccccttcgccttctc 220
>ref|XM_470452.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1920 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 152 aagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtc 196 |||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 121 aagacgtacgagatggtggacgacccggccaccgatgccgtcgtc 165
>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08 map S15179S, complete sequence Length = 166005 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 152 aagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtc 196 |||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 83264 aagacgtacgagatggtggacgacccggccaccgatgccgtcgtc 83308
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 152 aagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtc 196 |||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 35685486 aagacgtacgagatggtggacgacccggccaccgatgccgtcgtc 35685530 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Minus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| | | |||||||||| | ||| ||| ||||| || Sbjct: 30313859 cgccgttcttgtgcaagacgtacgaggtcgtggacgaccccggcacggacaccgtcatct 30313800 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 |||||||| ||||||||||||||||||| Sbjct: 30313799 cgtgggggttcgccggcaacagcttcgtcg 30313770 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||| || |||||| ||||| |||||||||| ||||||| Sbjct: 3324113 cgccgttcctgaccaagacgttcgacctggtggccgacccggccaccgacggcgtcgtct 3324172 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||||| | || |||| ||||||||||| Sbjct: 3324173 cgtggggccgcgcgggcagcagcttcgtcg 3324202
>gb|AY344485.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF3 mRNA, complete cds Length = 1742 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 152 aagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtc 196 |||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 220 aagacgtacgagatggtggacgacccggccaccgatgccgtcgtc 264
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 152 aagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtc 196 |||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 35775559 aagacgtacgagatggtggacgacccggccaccgatgccgtcgtc 35775603 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Minus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| | | |||||||||| | ||| ||| ||||| || Sbjct: 30405281 cgccgttcttgtgcaagacgtacgaggtcgtggacgaccccggcacggacaccgtcatct 30405222 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 |||||||| ||||||||||||||||||| Sbjct: 30405221 cgtgggggttcgccggcaacagcttcgtcg 30405192 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||| || |||||| ||||| |||||||||| ||||||| Sbjct: 3324224 cgccgttcctgaccaagacgttcgacctggtggccgacccggccaccgacggcgtcgtct 3324283 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||||| | || |||| ||||||||||| Sbjct: 3324284 cgtggggccgcgcgggcagcagcttcgtcg 3324313
>dbj|AK106118.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E07, full insert sequence Length = 1635 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 152 aagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtc 196 |||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 155 aagacgtacgagatggtggacgacccggccaccgatgccgtcgtc 199
>dbj|AK100430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088F14, full insert sequence Length = 2051 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 152 aagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtc 196 |||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 246 aagacgtacgagatggtggacgacccggccaccgatgccgtcgtc 290
>ref|XM_463332.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1236 Score = 56.0 bits (28), Expect = 5e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 136 ggcgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgt 195 ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || || Sbjct: 219 ggcgccgttcgtggcgaagacgtacgagatggtggcggacgcggccaccgacgcggtggt 278 Query: 196 cgcgtgggggcc 207 |||||||||| Sbjct: 279 gtcgtgggggcc 290
>emb|X82943.1|ZMHSFB Z.mays mRNA for heat shock factor Length = 2048 Score = 56.0 bits (28), Expect = 5e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 151 caagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcgcgtgg 202 ||||||||||| |||||||||||||| ||||| |||||||| || |||||| Sbjct: 212 caagacgtacgagatggtggacgacccggccacggacgccgtggtggcgtgg 263
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 5e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 136 ggcgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgt 195 ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || || Sbjct: 21935248 ggcgccgttcgtggcgaagacgtacgagatggtggcggacgcggccaccgacgcggtggt 21935307 Query: 196 cgcgtgggggcc 207 |||||||||| Sbjct: 21935308 gtcgtgggggcc 21935319 Score = 48.1 bits (24), Expect = 0.013 Identities = 77/95 (81%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| |||||||||||||| | || ||||| || || | Sbjct: 31363882 cgccgttcctgagcaagacgtacgagatggtggacgacccgtcgacggacgcggtggtgg 31363941 Query: 198 cgtgggggccggccggcaacagcttcgtcgncgcc 232 |||| ||| ||||||| ||||||||||| |||| Sbjct: 31363942 ggtggacgcccgccggcaccagcttcgtcgtcgcc 31363976 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 136 ggcgccgttcgtggccaagacgtacgggatggtg 169 ||||||||||||||| ||||||||| ||||||| Sbjct: 24963692 ggcgccgttcgtggcgaagacgtaccagatggtg 24963725
>dbj|AP003308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1129G05 Length = 132535 Score = 56.0 bits (28), Expect = 5e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 136 ggcgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgt 195 ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || || Sbjct: 17056 ggcgccgttcgtggcgaagacgtacgagatggtggcggacgcggccaccgacgcggtggt 17115 Query: 196 cgcgtgggggcc 207 |||||||||| Sbjct: 17116 gtcgtgggggcc 17127
>dbj|AK064271.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E08, full insert sequence Length = 1527 Score = 56.0 bits (28), Expect = 5e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 136 ggcgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgt 195 ||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || || Sbjct: 274 ggcgccgttcgtggcgaagacgtacgagatggtggcggacgcggccaccgacgcggtggt 333 Query: 196 cgcgtgggggcc 207 |||||||||| Sbjct: 334 gtcgtgggggcc 345
>gb|AY110852.1| Zea mays CL2307_1 mRNA sequence Length = 2364 Score = 56.0 bits (28), Expect = 5e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 151 caagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcgcgtgg 202 ||||||||||| |||||||||||||| ||||| |||||||| || |||||| Sbjct: 212 caagacgtacgagatggtggacgacccggccacggacgccgtggtggcgtgg 263
>ref|NM_187764.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1140 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||| || |||||| ||||| |||||||||| ||||||| Sbjct: 107 cgccgttcctgaccaagacgttcgacctggtggccgacccggccaccgacggcgtcgtct 166 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||||| | || |||| ||||||||||| Sbjct: 167 cgtggggccgcgcgggcagcagcttcgtcg 196
>ref|XM_469703.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1685 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| | | |||||||||| | ||| ||| ||||| || Sbjct: 155 cgccgttcttgtgcaagacgtacgaggtcgtggacgaccccggcacggacaccgtcatct 214 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 |||||||| ||||||||||||||||||| Sbjct: 215 cgtgggggttcgccggcaacagcttcgtcg 244
>gb|AY344489.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds Length = 1403 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||| || |||||| ||||| |||||||||| ||||||| Sbjct: 183 cgccgttcctgaccaagacgttcgacctggtggccgacccggccaccgacggcgtcgtct 242 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||||| | || |||| ||||||||||| Sbjct: 243 cgtggggccgcgcgggcagcagcttcgtcg 272
>gb|AY344486.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds Length = 1322 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| | | |||||||||| | ||| ||| ||||| || Sbjct: 176 cgccgttcttgtgcaagacgtacgaggtcgtggacgaccccggcacggacaccgtcatct 235 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 |||||||| ||||||||||||||||||| Sbjct: 236 cgtgggggttcgccggcaacagcttcgtcg 265
>gb|AY332465.1| Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds Length = 1385 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| | | |||||||||| | ||| ||| ||||| || Sbjct: 250 cgccgttcttgtgcaagacgtacgaggtcgtggacgaccccggcacggacaccgtcatct 309 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 |||||||| ||||||||||||||||||| Sbjct: 310 cgtgggggttcgccggcaacagcttcgtcg 339
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Minus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||| || |||||| ||||| |||||||||| ||||||| Sbjct: 105101 cgccgttcctgaccaagacgttcgacctggtggccgacccggccaccgacggcgtcgtct 105042 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||||| | || |||| ||||||||||| Sbjct: 105041 cgtggggccgcgcgggcagcagcttcgtcg 105012
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Minus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| | | |||||||||| | ||| ||| ||||| || Sbjct: 105539 cgccgttcttgtgcaagacgtacgaggtcgtggacgaccccggcacggacaccgtcatct 105480 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 |||||||| ||||||||||||||||||| Sbjct: 105479 cgtgggggttcgccggcaacagcttcgtcg 105450
>gb|AY998118.1| Oryza sativa heat shock protein 41 mRNA, complete cds Length = 1945 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| | | |||||||||| | ||| ||| ||||| || Sbjct: 412 cgccgttcttgtgcaagacgtacgaggtcgtggacgaccccggcacggacaccgtcatct 471 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 |||||||| ||||||||||||||||||| Sbjct: 472 cgtgggggttcgccggcaacagcttcgtcg 501
>dbj|AK109590.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C01, full insert sequence Length = 2217 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| | | |||||||||| | ||| ||| ||||| || Sbjct: 54 cgccgttcttgtgcaagacgtacgaggtcgtggacgaccccggcacggacaccgtcatct 113 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 |||||||| ||||||||||||||||||| Sbjct: 114 cgtgggggttcgccggcaacagcttcgtcg 143
>dbj|AK069579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022C13, full insert sequence Length = 2042 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| | | |||||||||| | ||| ||| ||||| || Sbjct: 413 cgccgttcttgtgcaagacgtacgaggtcgtggacgaccccggcacggacaccgtcatct 472 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 |||||||| ||||||||||||||||||| Sbjct: 473 cgtgggggttcgccggcaacagcttcgtcg 502
>dbj|AK066844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J01, full insert sequence Length = 2272 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||| || |||||| ||||| |||||||||| ||||||| Sbjct: 162 cgccgttcctgaccaagacgttcgacctggtggccgacccggccaccgacggcgtcgtct 221 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||||| | || |||| ||||||||||| Sbjct: 222 cgtggggccgcgcgggcagcagcttcgtcg 251
>ref|XM_506806.1| PREDICTED Oryza sativa (japonica cultivar-group), P0040H05.33 mRNA Length = 1846 Score = 48.1 bits (24), Expect = 0.013 Identities = 36/40 (90%) Strand = Plus / Plus Query: 137 gcgccgttcgtggccaagacgtacgggatggtggacgacc 176 ||||||||| || ||||||||||| |||||||||||||| Sbjct: 137 gcgccgttcctgctcaagacgtacgagatggtggacgacc 176
>ref|XM_465799.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1713 Score = 48.1 bits (24), Expect = 0.013 Identities = 36/40 (90%) Strand = Plus / Plus Query: 137 gcgccgttcgtggccaagacgtacgggatggtggacgacc 176 ||||||||| || ||||||||||| |||||||||||||| Sbjct: 153 gcgccgttcctgctcaagacgtacgagatggtggacgacc 192
>ref|NM_191220.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1323 Score = 48.1 bits (24), Expect = 0.013 Identities = 77/95 (81%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| |||||||||||||| | || ||||| || || | Sbjct: 32 cgccgttcctgagcaagacgtacgagatggtggacgacccgtcgacggacgcggtggtgg 91 Query: 198 cgtgggggccggccggcaacagcttcgtcgncgcc 232 |||| ||| ||||||| ||||||||||| |||| Sbjct: 92 ggtggacgcccgccggcaccagcttcgtcgtcgcc 126
>gb|AY344491.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF9 mRNA, complete cds Length = 1548 Score = 48.1 bits (24), Expect = 0.013 Identities = 77/95 (81%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| |||||||||||||| | || ||||| || || | Sbjct: 123 cgccgttcctgagcaagacgtacgagatggtggacgacccgtcgacggacgcggtggtgg 182 Query: 198 cgtgggggccggccggcaacagcttcgtcgncgcc 232 |||| ||| ||||||| ||||||||||| |||| Sbjct: 183 ggtggacgcccgccggcaccagcttcgtcgtcgcc 217
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 48.1 bits (24), Expect = 0.013 Identities = 77/95 (81%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| |||||||||||||| | || ||||| || || | Sbjct: 118165 cgccgttcctgagcaagacgtacgagatggtggacgacccgtcgacggacgcggtggtgg 118224 Query: 198 cgtgggggccggccggcaacagcttcgtcgncgcc 232 |||| ||| ||||||| ||||||||||| |||| Sbjct: 118225 ggtggacgcccgccggcaccagcttcgtcgtcgcc 118259
>dbj|AP004999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0040H05 Length = 172623 Score = 48.1 bits (24), Expect = 0.013 Identities = 36/40 (90%) Strand = Plus / Plus Query: 137 gcgccgttcgtggccaagacgtacgggatggtggacgacc 176 ||||||||| || ||||||||||| |||||||||||||| Sbjct: 139960 gcgccgttcctgctcaagacgtacgagatggtggacgacc 139999
>dbj|AK109856.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-G05, full insert sequence Length = 1735 Score = 48.1 bits (24), Expect = 0.013 Identities = 77/95 (81%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || ||||||||||| |||||||||||||| | || ||||| || || | Sbjct: 212 cgccgttcctgagcaagacgtacgagatggtggacgacccgtcgacggacgcggtggtgg 271 Query: 198 cgtgggggccggccggcaacagcttcgtcgncgcc 232 |||| ||| ||||||| ||||||||||| |||| Sbjct: 272 ggtggacgcccgccggcaccagcttcgtcgtcgcc 306
>dbj|AK072210.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013165J23, full insert sequence Length = 1846 Score = 48.1 bits (24), Expect = 0.013 Identities = 36/40 (90%) Strand = Plus / Plus Query: 137 gcgccgttcgtggccaagacgtacgggatggtggacgacc 176 ||||||||| || ||||||||||| |||||||||||||| Sbjct: 137 gcgccgttcctgctcaagacgtacgagatggtggacgacc 176
>dbj|AK065643.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035J03, full insert sequence Length = 1714 Score = 48.1 bits (24), Expect = 0.013 Identities = 36/40 (90%) Strand = Plus / Plus Query: 137 gcgccgttcgtggccaagacgtacgggatggtggacgacc 176 ||||||||| || ||||||||||| |||||||||||||| Sbjct: 153 gcgccgttcctgctcaagacgtacgagatggtggacgacc 192
>ref|NM_196523.1| Oryza sativa (japonica cultivar-group) putative auxin-induced protein (OSJNBa0006I13.10), mRNA Length = 1077 Score = 44.1 bits (22), Expect = 0.21 Identities = 73/90 (81%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || | |||||||||| ||||||| |||| |||||||||| |||||| Sbjct: 122 cgccgttcctgacgaagacgtacgacctggtggaggacccggccaccgacggcgtcgtgt 181 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||| | | || |||||||||||||||| Sbjct: 182 cgtggagccgcgcgggcaacagcttcgtcg 211
>gb|AY344488.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds Length = 1336 Score = 44.1 bits (22), Expect = 0.21 Identities = 73/90 (81%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || | |||||||||| ||||||| |||| |||||||||| |||||| Sbjct: 156 cgccgttcctgacgaagacgtacgacctggtggaggacccggccaccgacggcgtcgtgt 215 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||| | | || |||||||||||||||| Sbjct: 216 cgtggagccgcgcgggcaacagcttcgtcg 245
>ref|NM_192883.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1047 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 136 ggcgccgttcgtggccaagacgtacgggatggtg 169 ||||||||||||||| ||||||||| ||||||| Sbjct: 72 ggcgccgttcgtggcgaagacgtaccagatggtg 105
>ref|XM_476842.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1956 Score = 44.1 bits (22), Expect = 0.21 Identities = 34/38 (89%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgac 175 |||||||| || |||||||||||| |||||||||||| Sbjct: 654 cgccgttcctgaccaagacgtacgacatggtggacgac 691
>gb|AY344495.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF13 mRNA, complete cds Length = 1208 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 136 ggcgccgttcgtggccaagacgtacgggatggtg 169 ||||||||||||||| ||||||||| ||||||| Sbjct: 133 ggcgccgttcgtggcgaagacgtaccagatggtg 166
>gb|AY344487.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF5 mRNA, complete cds Length = 1268 Score = 44.1 bits (22), Expect = 0.21 Identities = 34/38 (89%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgac 175 |||||||| || |||||||||||| |||||||||||| Sbjct: 229 cgccgttcctgaccaagacgtacgacatggtggacgac 266
>gb|AY323488.1| Oryza sativa (japonica cultivar-group) heat stress protein (HS1) mRNA, complete cds Length = 1310 Score = 44.1 bits (22), Expect = 0.21 Identities = 34/38 (89%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgac 175 |||||||| || |||||||||||| |||||||||||| Sbjct: 252 cgccgttcctgaccaagacgtacgacatggtggacgac 289
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.21 Identities = 73/90 (81%) Strand = Plus / Minus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || | |||||||||| ||||||| |||| |||||||||| |||||| Sbjct: 14235502 cgccgttcctgacgaagacgtacgacctggtggaggacccggccaccgacggcgtcgtgt 14235443 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||| | | || |||||||||||||||| Sbjct: 14235442 cgtggagccgcgcgggcaacagcttcgtcg 14235413
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.21 Identities = 46/54 (85%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccg 191 |||||||| || |||||||||||| |||||||||||| | ||||||||||| Sbjct: 4171963 cgccgttcctgaccaagacgtacgacatggtggacgacgccggcaccgacgccg 4172016
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/46 (86%) Strand = Plus / Minus Query: 131 ggggtggcgccgttcgtggccaagacgtacgggatggtggacgacc 176 |||| ||||||||||||| ||||||||| |||||||||| |||| Sbjct: 20650881 ggggcggcgccgttcgtgtggaagacgtacaggatggtggaggacc 20650836 Score = 42.1 bits (21), Expect = 0.82 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 caacagcttcgtcgncgccgaccc 237 |||||||||||||| ||||||||| Sbjct: 20650798 caacagcttcgtcgtcgccgaccc 20650775 Score = 40.1 bits (20), Expect = 3.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 133 ggtggcgccgttcgtggccaagacgtacgggatggtggacgacc 176 ||||||||||||| ||| ||||||| || ||||||||| |||| Sbjct: 21413603 ggtggcgccgttcctggtgaagacgttcgagatggtggaggacc 21413646
>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0006C01 Length = 153865 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 136 ggcgccgttcgtggccaagacgtacgggatggtg 169 ||||||||||||||| ||||||||| ||||||| Sbjct: 36215 ggcgccgttcgtggcgaagacgtaccagatggtg 36248
>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10, complete sequence Length = 142737 Score = 44.1 bits (22), Expect = 0.21 Identities = 73/90 (81%) Strand = Plus / Minus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || | |||||||||| ||||||| |||| |||||||||| |||||| Sbjct: 107575 cgccgttcctgacgaagacgtacgacctggtggaggacccggccaccgacggcgtcgtgt 107516 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||| | | || |||||||||||||||| Sbjct: 107515 cgtggagccgcgcgggcaacagcttcgtcg 107486
>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427B07 Length = 172058 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/46 (86%) Strand = Plus / Minus Query: 131 ggggtggcgccgttcgtggccaagacgtacgggatggtggacgacc 176 |||| ||||||||||||| ||||||||| |||||||||| |||| Sbjct: 73288 ggggcggcgccgttcgtgtggaagacgtacaggatggtggaggacc 73243 Score = 42.1 bits (21), Expect = 0.82 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 caacagcttcgtcgncgccgaccc 237 |||||||||||||| ||||||||| Sbjct: 73205 caacagcttcgtcgtcgccgaccc 73182
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 44.1 bits (22), Expect = 0.21 Identities = 34/38 (89%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgac 175 |||||||| || |||||||||||| |||||||||||| Sbjct: 55585 cgccgttcctgaccaagacgtacgacatggtggacgac 55622
>dbj|AK101824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067M16, full insert sequence Length = 1955 Score = 44.1 bits (22), Expect = 0.21 Identities = 34/38 (89%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgac 175 |||||||| || |||||||||||| |||||||||||| Sbjct: 653 cgccgttcctgaccaagacgtacgacatggtggacgac 690
>dbj|AK072391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077L03, full insert sequence Length = 2561 Score = 44.1 bits (22), Expect = 0.21 Identities = 73/90 (81%) Strand = Plus / Plus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || | |||||||||| ||||||| |||| |||||||||| |||||| Sbjct: 503 cgccgttcctgacgaagacgtacgacctggtggaggacccggccaccgacggcgtcgtgt 562 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||| | | || |||||||||||||||| Sbjct: 563 cgtggagccgcgcgggcaacagcttcgtcg 592
>dbj|AK069479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019J23, full insert sequence Length = 1573 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 136 ggcgccgttcgtggccaagacgtacgggatggtg 169 ||||||||||||||| ||||||||| ||||||| Sbjct: 186 ggcgccgttcgtggcgaagacgtaccagatggtg 219
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.21 Identities = 73/90 (81%) Strand = Plus / Minus Query: 138 cgccgttcgtggccaagacgtacgggatggtggacgaccgtgccaccgacgccgtcgtcg 197 |||||||| || | |||||||||| ||||||| |||| |||||||||| |||||| Sbjct: 14243744 cgccgttcctgacgaagacgtacgacctggtggaggacccggccaccgacggcgtcgtgt 14243685 Query: 198 cgtgggggccggccggcaacagcttcgtcg 227 ||||| | | || |||||||||||||||| Sbjct: 14243684 cgtggagccgcgcgggcaacagcttcgtcg 14243655
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 ccgtgccaccgacgccgtcgtcgcg 199 ||||||||||| ||||||||||||| Sbjct: 332222 ccgtgccaccggcgccgtcgtcgcg 332198
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 ccgtgccaccgacgccgtcgtcgcg 199 ||||||||||| ||||||||||||| Sbjct: 124609 ccgtgccaccggcgccgtcgtcgcg 124585
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 ccgtgccaccgacgccgtcgtcgcg 199 ||||||||||| ||||||||||||| Sbjct: 165400 ccgtgccaccggcgccgtcgtcgcg 165376
>gb|AE005106.1| Halobacterium sp. NRC-1 section 137 of 170 of the complete genome Length = 13219 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 179 gccaccgacgccgtcgtcgcg 199 ||||||||||||||||||||| Sbjct: 941 gccaccgacgccgtcgtcgcg 921
>gb|L10720.1|BPETOXOP Bordetella pertussis toxin liberation operon Length = 9342 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 ccgtgccaccgacgccgtcgtcgcg 199 ||||||||||| ||||||||||||| Sbjct: 2454 ccgtgccaccggcgccgtcgtcgcg 2430
>gb|AC122844.4| Mus musculus BAC clone RP23-152A2 from 7, complete sequence Length = 194266 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 gcatctcctgtcctctccctccgt 96 |||||| ||||||||||||||||| Sbjct: 39510 gcatctactgtcctctccctccgt 39533
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cggcggcggcatgggctcgg 131 |||||||||||||||||||| Sbjct: 3947651 cggcggcggcatgggctcgg 3947632
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cgacgccgtcgtcgcgtggg 203 |||||||||||||||||||| Sbjct: 4179740 cgacgccgtcgtcgcgtggg 4179759
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cggcggcggcatgggctcgg 131 |||||||||||||||||||| Sbjct: 2430564 cggcggcggcatgggctcgg 2430583
>gb|AE005723.1| Caulobacter crescentus CB15 section 49 of 359 of the complete genome Length = 10573 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 acgatgatgagcggcggcggcatg 124 ||||||| |||||||||||||||| Sbjct: 4675 acgatgaagagcggcggcggcatg 4652
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cggcggcggcatgggctcgg 131 |||||||||||||||||||| Sbjct: 1998728 cggcggcggcatgggctcgg 1998747
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 ctccgtctccgtcccaatccactcaccg 40 ||||||| ||||||| |||||||||||| Sbjct: 358268 ctccgtcgccgtcccgatccactcaccg 358241
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0513E02 Length = 141477 Score = 40.1 bits (20), Expect = 3.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 133 ggtggcgccgttcgtggccaagacgtacgggatggtggacgacc 176 ||||||||||||| ||| ||||||| || ||||||||| |||| Sbjct: 48103 ggtggcgccgttcctggtgaagacgttcgagatggtggaggacc 48146
>gb|AE005037.1| Halobacterium sp. NRC-1 section 68 of 170 of the complete genome Length = 13508 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 cgaccgtgccaccgacgccg 191 |||||||||||||||||||| Sbjct: 11442 cgaccgtgccaccgacgccg 11423
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gagcggcggcggcatgggct 128 |||||||||||||||||||| Sbjct: 1604730 gagcggcggcggcatgggct 1604749
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 ctccgtctccgtcccaatccactcaccg 40 ||||||| ||||||| |||||||||||| Sbjct: 358268 ctccgtcgccgtcccgatccactcaccg 358241
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 ctccgtctccgtcccaatccactcaccg 40 ||||||| ||||||| |||||||||||| Sbjct: 91319 ctccgtcgccgtcccgatccactcaccg 91292 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,140,555 Number of Sequences: 3902068 Number of extensions: 2140555 Number of successful extensions: 38662 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 37730 Number of HSP's gapped (non-prelim): 938 length of query: 250 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 228 effective length of database: 17,147,199,772 effective search space: 3909561548016 effective search space used: 3909561548016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
