>ref|XM_958777.1| Neurospora crassa OR74A hypothetical protein (NCU03062.1) partial
            mRNA
          Length = 2706

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 94   gcggcgagcctcgtcggacgc 114
            |||||||||||||||||||||
Sbjct: 1785 gcggcgagcctcgtcggacgc 1765

>ref|XM_330497.1| Neurospora crassa OR74A hypothetical protein (NCU03062.1) partial
            mRNA
          Length = 2706

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 94   gcggcgagcctcgtcggacgc 114
            |||||||||||||||||||||
Sbjct: 1785 gcggcgagcctcgtcggacgc 1765

>ref|NM_079630.2| Drosophila melanogaster Chromatin assembly factor 1 subunit
           CG4236-RA (Caf1), mRNA
          Length = 1842

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 111 acgcgctcctcgacggcgtcg 131
           |||||||||||||||||||||
Sbjct: 385 acgcgctcctcgacggcgtcg 365

>gb|AY061408.1| Drosophila melanogaster LD33761 full length cDNA
          Length = 1849

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 111 acgcgctcctcgacggcgtcg 131
           |||||||||||||||||||||
Sbjct: 376 acgcgctcctcgacggcgtcg 356

>gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
              BACR32A03, complete sequence
          Length = 182601

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 111    acgcgctcctcgacggcgtcg 131
              |||||||||||||||||||||
Sbjct: 136025 acgcgctcctcgacggcgtcg 136005

>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the
             complete sequence
          Length = 236375

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 111   acgcgctcctcgacggcgtcg 131
             |||||||||||||||||||||
Sbjct: 29491 acgcgctcctcgacggcgtcg 29471

>gb|U62388.1|DMU62388 Drosophila melanogaster chromatin assembly factor 1 p55 subunit
           (p55) mRNA, complete cds
          Length = 1807

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 111 acgcgctcctcgacggcgtcg 131
           |||||||||||||||||||||
Sbjct: 350 acgcgctcctcgacggcgtcg 330

>ref|XM_525929.1| PREDICTED: Pan troglodytes similar to KIAA0066 (LOC470548), mRNA
          Length = 3450

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 ccaaactccaagcctccaac 386
           ||||||||||||||||||||
Sbjct: 812 ccaaactccaagcctccaac 793

>gb|BC083239.1| Danio rerio zgc:101672, mRNA (cDNA clone MGC:101672 IMAGE:7226946),
           complete cds
          Length = 1198

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 aggcagctggccgtcgccca 217
           ||||||||||||||||||||
Sbjct: 166 aggcagctggccgtcgccca 147

>ref|NM_012233.1| Homo sapiens RAB3 GTPase activating protein subunit 1 (catalytic)
           (RAB3GAP1), mRNA
          Length = 4179

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 ccaaactccaagcctccaac 386
           ||||||||||||||||||||
Sbjct: 819 ccaaactccaagcctccaac 800

>ref|NM_080674.1| Homo sapiens chromosome 20 open reading frame 86 (C20orf86), mRNA
          Length = 1014

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 cctccccgcgcagcccctgg 155
           ||||||||||||||||||||
Sbjct: 156 cctccccgcgcagcccctgg 175

>gb|BC071602.1| Homo sapiens RAB3 GTPase activating protein subunit 1 (catalytic),
           mRNA (cDNA clone IMAGE:5276867), containing frame-shift
           errors
          Length = 4186

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 ccaaactccaagcctccaac 386
           ||||||||||||||||||||
Sbjct: 805 ccaaactccaagcctccaac 786

>emb|AL354776.15| Human DNA sequence from clone RP11-196N14 on chromosome 20 Contains the
              3' end of the PPP4R1L gene for protein phosphatase 4
              regulatory subunit 1-like, the C20orf85 gene for an ankyrin
              domain-containing protein, the C20orf86 gene and three CpG
              islands, complete sequence
          Length = 146208

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    cctccccgcgcagcccctgg 155
              ||||||||||||||||||||
Sbjct: 115359 cctccccgcgcagcccctgg 115340

>emb|Y13833.1|SCY13833 Streptomyces coelicolor arsC (partial), glnII genes, ORF2, ORF3 & ORF
          Length = 3873

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 109  ggacgcgctcctcgacggcgtcgg 132
            ||||||||||||||||||| ||||
Sbjct: 1719 ggacgcgctcctcgacggcctcgg 1696

>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 109    ggacgcgctcctcgacggcgtcgg 132
              ||||||||||||||||||| ||||
Sbjct: 271220 ggacgcgctcctcgacggcctcgg 271197

>emb|CR857352.1| Pongo pygmaeus mRNA; cDNA DKFZp469D2032 (from clone DKFZp469D2032)
          Length = 2393

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 ccaaactccaagcctccaac 386
           ||||||||||||||||||||
Sbjct: 797 ccaaactccaagcctccaac 778

>gb|AC093498.3| Drosophila melanogaster 3L BAC RP98-15O8 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 160931

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   caagcaggacaccatcgaca 177
             ||||||||||||||||||||
Sbjct: 21960 caagcaggacaccatcgaca 21941

>dbj|AK022494.1| Homo sapiens cDNA FLJ12432 fis, clone NT2RM1000018, highly similar
           to Human mRNA for KIAA0066 gene
          Length = 3389

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 ccaaactccaagcctccaac 386
           ||||||||||||||||||||
Sbjct: 809 ccaaactccaagcctccaac 790

>ref|NM_140377.1| Drosophila melanogaster CG17687-RA (CG17687), mRNA
          Length = 4715

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  caagcaggacaccatcgaca 177
            ||||||||||||||||||||
Sbjct: 2777 caagcaggacaccatcgaca 2796

>ref|XM_685263.1| PREDICTED: Danio rerio similar to DNA replication complex GINS
            protein PSF1 (LOC561858), mRNA
          Length = 2099

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  aggcagctggccgtcgccca 217
            ||||||||||||||||||||
Sbjct: 1193 aggcagctggccgtcgccca 1174

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 251     cgacctcggcgcagattccctcaacacg 278
               |||||||||||||||||| ||| |||||
Sbjct: 1613989 cgacctcggcgcagattcgctcgacacg 1614016

>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence
          Length = 148298

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    aggcagctggccgtcgccca 217
              ||||||||||||||||||||
Sbjct: 140140 aggcagctggccgtcgccca 140121

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 365      ctccaaactccaagcctccaacgt 388
                |||||| |||||||||||||||||
Sbjct: 27672195 ctccaagctccaagcctccaacgt 27672172

>gb|AC020602.6| Homo sapiens BAC clone RP11-461M18 from 2, complete sequence
          Length = 167227

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    ccaaactccaagcctccaac 386
              ||||||||||||||||||||
Sbjct: 124155 ccaaactccaagcctccaac 124136

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 112     cgcgctcctcgacggcgtcg 131
               ||||||||||||||||||||
Sbjct: 1962362 cgcgctcctcgacggcgtcg 1962381

>ref|NM_001006081.1| Danio rerio zgc:101672 (zgc:101672), mRNA
          Length = 1198

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 aggcagctggccgtcgccca 217
           ||||||||||||||||||||
Sbjct: 166 aggcagctggccgtcgccca 147

>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0011H15
          Length = 130146

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 365   ctccaaactccaagcctccaacgt 388
             |||||| |||||||||||||||||
Sbjct: 69539 ctccaagctccaagcctccaacgt 69516

>dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1125_C01
          Length = 123849

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 365  ctccaaactccaagcctccaacgt 388
            |||||| |||||||||||||||||
Sbjct: 5117 ctccaagctccaagcctccaacgt 5094

>gb|AE005003.1| Halobacterium sp. NRC-1 section 34 of 170 of the complete genome
          Length = 14379

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   cggacgcgctcctcgacggcgtcg 131
             |||||||||| |||||||||||||
Sbjct: 11003 cggacgcgctgctcgacggcgtcg 10980

>gb|AE003538.4| Drosophila melanogaster chromosome 3L, section 47 of 83 of the complete
              sequence
          Length = 303314

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    caagcaggacaccatcgaca 177
              ||||||||||||||||||||
Sbjct: 206394 caagcaggacaccatcgaca 206413

>dbj|D31886.1|HUMORFKG1O Homo sapiens KIAA0066 mRNA, partial cds
          Length = 3635

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 ccaaactccaagcctccaac 386
           ||||||||||||||||||||
Sbjct: 796 ccaaactccaagcctccaac 777

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 95      cggcgagcctcgtcggacgcgctc 118
               ||||||||| ||||||||||||||
Sbjct: 3366964 cggcgagccgcgtcggacgcgctc 3366941

>gb|AF012465.1|AF012465 Pleuronectes americanus aminopeptidase N (ampN) mRNA, complete cds
          Length = 3517

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  tcaagaggcagctggccgtc 212
            ||||||||||||||||||||
Sbjct: 3251 tcaagaggcagctggccgtc 3270


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,499,510
Number of Sequences: 3902068
Number of extensions: 2499510
Number of successful extensions: 46453
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46124
Number of HSP's gapped (non-prelim): 329
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)