ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast73g11 |
|---|---|
| Clone Library Name | barley_pub |
>CLFA_STAAW (Q8NXJ1) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 946 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = +3 Query: 177 DGYTVSTVSDLNPSGTHPYALLPRPRAGDLVL----LDSAGSTLYT 302 D + ++ +LN +G A +P AGD VL +DS G+ +YT Sbjct: 272 DTFKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYT 317
>CLFA_STAAU (Q53653) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 933 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = +3 Query: 177 DGYTVSTVSDLNPSGTHPYALLPRPRAGDLVL----LDSAGSTLYT 302 D + ++ +LN +G A +P AGD VL +DS G+ +YT Sbjct: 273 DTFKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYT 318
>CLFA_STAAC (Q5HHM8) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 933 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = +3 Query: 177 DGYTVSTVSDLNPSGTHPYALLPRPRAGDLVL----LDSAGSTLYT 302 D + ++ +LN +G A +P AGD VL +DS G+ +YT Sbjct: 273 DTFKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYT 318
>CLFA_STAAN (Q99VJ4) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 989 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = +3 Query: 177 DGYTVSTVSDLNPSGTHPYALLPRPRAGDLVL----LDSAGSTLYT 302 D + ++ +LN +G A +P AGD VL +DS G+ +YT Sbjct: 273 DTFKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYT 318
>CLFA_STAAR (Q6GIK4) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 1029 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = +3 Query: 177 DGYTVSTVSDLNPSGTHPYALLPRPRAGDLVL----LDSAGSTLYT 302 D + ++ +LN +G A +P AGD VL +DS G+ +YT Sbjct: 273 DTFKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYT 318
>CLFA_STAAM (Q932C5) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 935 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = +3 Query: 177 DGYTVSTVSDLNPSGTHPYALLPRPRAGDLVL----LDSAGSTLYT 302 D + ++ +LN +G A +P AGD VL +DS G+ +YT Sbjct: 273 DTFKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYT 318
>CLFA_STAAS (Q6GB45) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 928 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = +3 Query: 177 DGYTVSTVSDLNPSGTHPYALLPRPRAGDLVL----LDSAGSTLYT 302 D + ++ +LN +G A +P AGD VL +DS G+ +YT Sbjct: 272 DTFKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYT 317
>YQA4_CAEEL (Q10040) Hypothetical zinc protease C28F5.4 (EC 3.4.99.-)| Length = 745 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Frame = +3 Query: 180 GYTVSTVSDLNPSGTHPYALLPRPRAGDLVL------LDSAGSTLYTLP 308 GY VST S LN + + ++ P + D VL L+SA + +P Sbjct: 620 GYNVSTESRLNDGNVYLHVIVQGPESADHVLERIEVFLESAREEIVAMP 668
>AROC_TOXGO (O02607) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 536 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 7/37 (18%) Frame = +3 Query: 174 EDGYTVSTV-------SDLNPSGTHPYALLPRPRAGD 263 EDGYT+ T D P H A +PRP GD Sbjct: 70 EDGYTLGTPLAMLVWNEDRRPQEYHALATVPRPGHGD 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.131 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,980,294 Number of Sequences: 219361 Number of extensions: 177182 Number of successful extensions: 478 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 478 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
