ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast73g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507231.1| PREDICTED Oryza sativa (japonica cultivar-group... 119 7e-24
2ref|XM_482398.1| Oryza sativa (japonica cultivar-group), mRNA 119 7e-24
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
4dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
5dbj|AK101579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
6dbj|AK101578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
7ref|XM_750015.1| Aspergillus fumigatus Af293 nuclear migration p... 46 0.081
8gb|AC158667.8| Mus musculus 6 BAC RP23-83P5 (Roswell Park Cancer... 46 0.081
9ref|XM_472363.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
10emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
11gb|AC023277.5| Homo sapiens BAC clone RP11-438E5 from 4, complet... 42 1.3
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
13emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right termin... 42 1.3
14emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left termina... 42 1.3
15gb|DQ214041.1| Taeniopygia guttata clone 0058P0053D05 mitochondr... 40 5.0
16ref|NM_198103.1| Mus musculus exocyst complex component 8 (Exoc8... 40 5.0
17gb|AC103621.6| Mus musculus chromosome 5, clone RP24-230J14, com... 40 5.0
18gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, com... 40 5.0
19ref|XM_421173.1| PREDICTED: Gallus gallus similar to WD repeat d... 40 5.0
20ref|XM_956614.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.0
21ref|XM_326587.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.0
22gb|AC102050.13| Mus musculus chromosome 8, clone RP23-389O4, com... 40 5.0
23emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.0
24ref|XM_744222.1| Aspergillus fumigatus Af293 hypothetical protei... 40 5.0
25gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosom... 40 5.0
26gb|AC093141.2| Felis catus clone RP86-512F4, complete sequence 40 5.0
27emb|AL672234.27| Mouse DNA sequence from clone RP23-356I16 on ch... 40 5.0
28emb|AL670008.1|NCB13O8 Neurospora crassa DNA linkage group V BAC... 40 5.0
29gb|AC032044.28| Homo sapiens chromosome 17, clone RP11-818O24, c... 40 5.0
30emb|AJ250838.2|GGA250838 Gallus gallus IL-6 gene for interleukin... 40 5.0
31gb|BC057052.1| Mus musculus exocyst complex component 8, mRNA (c... 40 5.0
32gb|AC102953.5| Homo sapiens BAC clone RP11-1246C19 from 7, compl... 40 5.0
33gb|AE012048.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.0
34gb|AE012512.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.0
35dbj|AK070848.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
36dbj|AP001888.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.0
37gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.0
38emb|BX005181.5| Mouse DNA sequence from clone RP24-364O14 on chr... 40 5.0
39gb|AC139158.3| Mus musculus BAC clone RP24-77I7 from 8, complete... 40 5.0
40gb|AC142502.3| Mus musculus BAC clone RP24-530L11 from 3, comple... 40 5.0
41gb|AC149219.4| Mus musculus BAC clone RP24-91L19 from 19, comple... 40 5.0
42emb|AL928962.9| Mouse DNA sequence from clone RP23-455A4 on chro... 40 5.0 
>ref|XM_507231.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0007M04.44
           mRNA
          Length = 1644

 Score =  119 bits (60), Expect = 7e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                       
Query: 223 cccacccctacgcgctcctcccgcggccccgcgccggggacctcgtcctcctcgactccg 282
           ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 253 cccacccctacgcgctcctcccgcgcccgcgcgccggggacctcgtcctgctcgactccg 312

                                                           
Query: 283 ccggatccacgctctacaccctccccctccccgtctccgcggacgccg 330
           | |  ||| |||||||||||||| |||||||  |||||| || |||||
Sbjct: 313 cggcctccgcgctctacaccctcgccctcccgctctccgggggcgccg 360



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 158 cgccggactcgtcctcgaggacggctacaccgtctccacggtctccgacctaaacc 213
           |||||| |||||||| || ||||||||||||||| |||| | | ||||||| ||||
Sbjct: 176 cgccggcctcgtcctggacgacggctacaccgtcaccaccgccgccgacctcaacc 231
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>ref|XM_482398.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1644

 Score =  119 bits (60), Expect = 7e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                       
Query: 223 cccacccctacgcgctcctcccgcggccccgcgccggggacctcgtcctcctcgactccg 282
           ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 253 cccacccctacgcgctcctcccgcgcccgcgcgccggggacctcgtcctgctcgactccg 312

                                                           
Query: 283 ccggatccacgctctacaccctccccctccccgtctccgcggacgccg 330
           | |  ||| |||||||||||||| |||||||  |||||| || |||||
Sbjct: 313 cggcctccgcgctctacaccctcgccctcccgctctccgggggcgccg 360



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 158 cgccggactcgtcctcgaggacggctacaccgtctccacggtctccgacctaaacc 213
           |||||| |||||||| || ||||||||||||||| |||| | | ||||||| ||||
Sbjct: 176 cgccggcctcgtcctggacgacggctacaccgtcaccaccgccgccgacctcaacc 231
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  119 bits (60), Expect = 7e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                            
Query: 223      cccacccctacgcgctcctcccgcggccccgcgccggggacctcgtcctcctcgactccg 282
                ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 19819784 cccacccctacgcgctcctcccgcgcccgcgcgccggggacctcgtcctgctcgactccg 19819843

                                                                
Query: 283      ccggatccacgctctacaccctccccctccccgtctccgcggacgccg 330
                | |  ||| |||||||||||||| |||||||  |||||| || |||||
Sbjct: 19819844 cggcctccgcgctctacaccctcgccctcccgctctccgggggcgccg 19819891



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 158      cgccggactcgtcctcgaggacggctacaccgtctccacggtctccgacctaaacc 213
                |||||| |||||||| || ||||||||||||||| |||| | | ||||||| ||||
Sbjct: 19819707 cgccggcctcgtcctggacgacggctacaccgtcaccaccgccgccgacctcaacc 19819762
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>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0007M04
          Length = 176293

 Score =  119 bits (60), Expect = 7e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                          
Query: 223    cccacccctacgcgctcctcccgcggccccgcgccggggacctcgtcctcctcgactccg 282
              ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 148735 cccacccctacgcgctcctcccgcgcccgcgcgccggggacctcgtcctgctcgactccg 148794

                                                              
Query: 283    ccggatccacgctctacaccctccccctccccgtctccgcggacgccg 330
              | |  ||| |||||||||||||| |||||||  |||||| || |||||
Sbjct: 148795 cggcctccgcgctctacaccctcgccctcccgctctccgggggcgccg 148842



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                      
Query: 158    cgccggactcgtcctcgaggacggctacaccgtctccacggtctccgacctaaacc 213
              |||||| |||||||| || ||||||||||||||| |||| | | ||||||| ||||
Sbjct: 148658 cgccggcctcgtcctggacgacggctacaccgtcaccaccgccgccgacctcaacc 148713
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>dbj|AK101579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050N09, full
           insert sequence
          Length = 1643

 Score =  119 bits (60), Expect = 7e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                       
Query: 223 cccacccctacgcgctcctcccgcggccccgcgccggggacctcgtcctcctcgactccg 282
           ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 252 cccacccctacgcgctcctcccgcgcccgcgcgccggggacctcgtcctgctcgactccg 311

                                                           
Query: 283 ccggatccacgctctacaccctccccctccccgtctccgcggacgccg 330
           | |  ||| |||||||||||||| |||||||  |||||| || |||||
Sbjct: 312 cggcctccgcgctctacaccctcgccctcccgctctccgggggcgccg 359



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 158 cgccggactcgtcctcgaggacggctacaccgtctccacggtctccgacctaaacc 213
           |||||| |||||||| || ||||||||||||||| |||| | | ||||||| ||||
Sbjct: 175 cgccggcctcgtcctggacgacggctacaccgtcaccaccgccgccgacctcaacc 230
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>dbj|AK101578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050N07, full
           insert sequence
          Length = 1643

 Score =  119 bits (60), Expect = 7e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                       
Query: 223 cccacccctacgcgctcctcccgcggccccgcgccggggacctcgtcctcctcgactccg 282
           ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 252 cccacccctacgcgctcctcccgcgcccgcgcgccggggacctcgtcctgctcgactccg 311

                                                           
Query: 283 ccggatccacgctctacaccctccccctccccgtctccgcggacgccg 330
           | |  ||| |||||||||||||| |||||||  |||||| || |||||
Sbjct: 312 cggcctccgcgctctacaccctcgccctcccgctctccgggggcgccg 359



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 158 cgccggactcgtcctcgaggacggctacaccgtctccacggtctccgacctaaacc 213
           |||||| |||||||| || ||||||||||||||| |||| | | ||||||| ||||
Sbjct: 175 cgccggcctcgtcctggacgacggctacaccgtcaccaccgccgccgacctcaacc 230
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>ref|XM_750015.1| Aspergillus fumigatus Af293 nuclear migration protein (Afu2g07730)
            partial mRNA
          Length = 3801

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 335  gcggagactcgcggngggcgccggcg 360
            |||||||||||||| |||||||||||
Sbjct: 3222 gcggagactcgcggtgggcgccggcg 3197
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>gb|AC158667.8| Mus musculus 6 BAC RP23-83P5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 234055

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 298    acaccctccccctccccgtctcc 320
              |||||||||||||||||||||||
Sbjct: 108060 acaccctccccctccccgtctcc 108038
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>ref|XM_472363.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1461

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 298 acaccctccccctccccgtctccgc 322
           |||||||||||||| ||||||||||
Sbjct: 287 acaccctccccctcgccgtctccgc 311
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>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08,
             complete sequence
          Length = 106975

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 298   acaccctccccctccccgtctccgc 322
             |||||||||||||| ||||||||||
Sbjct: 12769 acaccctccccctcgccgtctccgc 12793
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>gb|AC023277.5| Homo sapiens BAC clone RP11-438E5 from 4, complete sequence
          Length = 163257

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 301 ccctccccctccccgtctccg 321
           |||||||||||||||||||||
Sbjct: 931 ccctccccctccccgtctccg 951
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 298      acaccctccccctccccgtctccgc 322
                |||||||||||||| ||||||||||
Sbjct: 19857961 acaccctccccctcgccgtctccgc 19857985
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>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat
          Length = 243019

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 256    ccggggacctcgtcctcctcg 276
              |||||||||||||||||||||
Sbjct: 109301 ccggggacctcgtcctcctcg 109321
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>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat
          Length = 273746

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 256    ccggggacctcgtcctcctcg 276
              |||||||||||||||||||||
Sbjct: 109301 ccggggacctcgtcctcctcg 109321
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>gb|DQ214041.1| Taeniopygia guttata clone 0058P0053D05 mitochondrial ribosomal
           protein S35 variant 2-like mRNA, complete sequence
          Length = 1226

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 cgcgctcctcccgcggcccc 252
           ||||||||||||||||||||
Sbjct: 21  cgcgctcctcccgcggcccc 2
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>ref|NM_198103.1| Mus musculus exocyst complex component 8 (Exoc8), mRNA
          Length = 4617

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 ctcccgcggccccgcgccgg 259
           ||||||||||||||||||||
Sbjct: 445 ctcccgcggccccgcgccgg 426
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>gb|AC103621.6| Mus musculus chromosome 5, clone RP24-230J14, complete sequence
          Length = 169247

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   ccctccccctccccgtctcc 320
             ||||||||||||||||||||
Sbjct: 56279 ccctccccctccccgtctcc 56298
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>gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, complete sequence
          Length = 179087

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   ctctacaccctccccctccc 313
             ||||||||||||||||||||
Sbjct: 38594 ctctacaccctccccctccc 38575
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>ref|XM_421173.1| PREDICTED: Gallus gallus similar to WD repeat domain 21
           (LOC423253), mRNA
          Length = 2774

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 ccggggacctcgtcctcctc 275
           ||||||||||||||||||||
Sbjct: 501 ccggggacctcgtcctcctc 482
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>ref|XM_956614.1| Neurospora crassa OR74A hypothetical protein (NCU01095.1) partial
            mRNA
          Length = 1761

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  tcgtcctcctcgactccgcc 284
            ||||||||||||||||||||
Sbjct: 1142 tcgtcctcctcgactccgcc 1161
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>ref|XM_326587.1| Neurospora crassa OR74A hypothetical protein (NCU01095.1) partial
            mRNA
          Length = 1761

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  tcgtcctcctcgactccgcc 284
            ||||||||||||||||||||
Sbjct: 1142 tcgtcctcctcgactccgcc 1161
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>gb|AC102050.13| Mus musculus chromosome 8, clone RP23-389O4, complete sequence
          Length = 203942

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ctcccgcggccccgcgccgg 259
             ||||||||||||||||||||
Sbjct: 44928 ctcccgcggccccgcgccgg 44947
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 178     acggctacaccgtctccacg 197
               ||||||||||||||||||||
Sbjct: 4688424 acggctacaccgtctccacg 4688443
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>ref|XM_744222.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g01800)
           partial mRNA
          Length = 924

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 301 ccctccccctccccgtctcc 320
           ||||||||||||||||||||
Sbjct: 516 ccctccccctccccgtctcc 497
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>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete
            sequence
          Length = 177109

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  ctctacaccctccccctccc 313
            ||||||||||||||||||||
Sbjct: 6627 ctctacaccctccccctccc 6646
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>gb|AC093141.2| Felis catus clone RP86-512F4, complete sequence
          Length = 119353

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   ccctccccctccccgtctcc 320
             ||||||||||||||||||||
Sbjct: 10523 ccctccccctccccgtctcc 10504
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>emb|AL672234.27| Mouse DNA sequence from clone RP23-356I16 on chromosome 8, complete
             sequence
          Length = 221012

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ctcccgcggccccgcgccgg 259
             ||||||||||||||||||||
Sbjct: 38980 ctcccgcggccccgcgccgg 38999
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>emb|AL670008.1|NCB13O8 Neurospora crassa DNA linkage group V BAC contig B13O8
          Length = 80765

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   tcgtcctcctcgactccgcc 284
             ||||||||||||||||||||
Sbjct: 55395 tcgtcctcctcgactccgcc 55376
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>gb|AC032044.28| Homo sapiens chromosome 17, clone RP11-818O24, complete sequence
          Length = 199656

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   ccctccccctccccgtctcc 320
             ||||||||||||||||||||
Sbjct: 89403 ccctccccctccccgtctcc 89422
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>emb|AJ250838.2|GGA250838 Gallus gallus IL-6 gene for interleukin-6 precursor
          Length = 3245

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 cctccccctccccgtctccg 321
           ||||||||||||||||||||
Sbjct: 347 cctccccctccccgtctccg 366
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>gb|BC057052.1| Mus musculus exocyst complex component 8, mRNA (cDNA clone
           MGC:67332 IMAGE:6822067), complete cds
          Length = 4617

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 ctcccgcggccccgcgccgg 259
           ||||||||||||||||||||
Sbjct: 445 ctcccgcggccccgcgccgg 426
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>gb|AC102953.5| Homo sapiens BAC clone RP11-1246C19 from 7, complete sequence
          Length = 148996

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   ccctccccctccccgtctcc 320
             ||||||||||||||||||||
Sbjct: 99992 ccctccccctccccgtctcc 99973
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>gb|AE012048.1| Xanthomonas axonopodis pv. citri str. 306,  section 426 of 469 of the
            complete genome
          Length = 12239

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 178  acggctacaccgtctccacg 197
            ||||||||||||||||||||
Sbjct: 8137 acggctacaccgtctccacg 8156
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>gb|AE012512.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 420
            of 460 of the complete genome
          Length = 11141

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 178  acggctacaccgtctccacg 197
            ||||||||||||||||||||
Sbjct: 4858 acggctacaccgtctccacg 4877
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>dbj|AK070848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068G12, full
           insert sequence
          Length = 2559

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  gccccctcccgtctccgccg 65
           ||||||||||||||||||||
Sbjct: 289 gccccctcccgtctccgccg 270
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>dbj|AP001888.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-300I6, complete
             sequence
          Length = 161505

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 233   cgcgctcctcccgcggccccgcgc 256
             ||||| ||||||||||||||||||
Sbjct: 63985 cgcgcccctcccgcggccccgcgc 63962
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 172     tcgaggacggctacaccgtctcca 195
               ||||||||||| ||||||||||||
Sbjct: 3370634 tcgaggacggcgacaccgtctcca 3370611
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>emb|BX005181.5| Mouse DNA sequence from clone RP24-364O14 on chromosome 2, complete
             sequence
          Length = 118597

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   ctctacaccctccccctccc 313
             ||||||||||||||||||||
Sbjct: 29738 ctctacaccctccccctccc 29757
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>gb|AC139158.3| Mus musculus BAC clone RP24-77I7 from 8, complete sequence
          Length = 203921

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    ctcccgcggccccgcgccgg 259
              ||||||||||||||||||||
Sbjct: 103054 ctcccgcggccccgcgccgg 103035
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>gb|AC142502.3| Mus musculus BAC clone RP24-530L11 from 3, complete sequence
          Length = 160259

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   ccctccccctccccgtctcc 320
             ||||||||||||||||||||
Sbjct: 17887 ccctccccctccccgtctcc 17906
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>gb|AC149219.4| Mus musculus BAC clone RP24-91L19 from 19, complete sequence
          Length = 205546

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    ccctccccctccccgtctcc 320
              ||||||||||||||||||||
Sbjct: 170489 ccctccccctccccgtctcc 170470
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>emb|AL928962.9| Mouse DNA sequence from clone RP23-455A4 on chromosome 2, complete
              sequence
          Length = 172286

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    ccctccccctccccgtctcc 320
              ||||||||||||||||||||
Sbjct: 158040 ccctccccctccccgtctcc 158021


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,925,133
Number of Sequences: 3902068
Number of extensions: 1925133
Number of successful extensions: 72076
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71839
Number of HSP's gapped (non-prelim): 237
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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