>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 25/100 (25%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
 Frame = +3

Query: 45   GTMPAPRR*ERPRDGRAIPRVRGLRLPRGHRIPRV-----------PXXXXXXXXXXXGG 191
            G+ P P     P      P V GL +     +P             P           G 
Sbjct: 968  GSQPIP-----PTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGP 1022

Query: 192  HPDRPAGAPRGRAVLAGARADGEHGVLLHPLPDATPRRLP 311
               +PAGAP+  AV  G    G HG    P     P  +P
Sbjct: 1023 QQQQPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMP 1062

>NODI_RHILO (P23703) Nod factor export ATP-binding protein I (Nodulation|
           ATP-binding protein I)
          Length = 340

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 142 GMRCPRGSRSPRTRGMALPSRGRSQRRGAGMVPE 41
           GM CP    +    G+ +P+R R  RRG G+VP+
Sbjct: 89  GMTCPDAG-TITVLGVPVPARARLARRGIGVVPQ 121

>SHP_RAT (P97947) Nuclear receptor 0B2 (Orphan nuclear receptor SHP) (Small|
           heterodimer partner)
          Length = 260

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 266 SVLSVGPRSRQYSPASRSSC 207
           ++LS GPR+R  +PASRS C
Sbjct: 23  TLLSPGPRTRPMAPASRSHC 42

>KHSE_LISMO (Q8Y4A6) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 189 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 290
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>KHSE_LISMF (Q71WN3) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 189 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 290
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>KHSE_LISIN (Q927U8) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 189 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 290
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
 Frame = +3

Query: 45  GTMPAPR-R*ERPRDGR-AIPRVRGLRLPRGHRIPRVPXXXXXXXXXXXGGHPDRPA-GA 215
           G   APR   + PR G     R +G+  P    IPR             GG P RP  G 
Sbjct: 175 GNASAPRPHAQGPRPGNNPFSRKQGMHTPTPGDIPRPHPMARPTADNGRGGRPGRPGQGQ 234

Query: 216 PRGRAVLAGARADGEHG 266
            +GR    G    G  G
Sbjct: 235 GQGRGFRGGRPGQGGQG 251

>PRTP_EBV (P25939) Probable processing and transport protein|
          Length = 789

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 151 GTRGM-RCPRGSRSPRTRGMALPSRGRS 71
           G RG  + P G RSPRTRG+  P    S
Sbjct: 79  GLRGQTQAPSGHRSPRTRGLETPGAAMS 106

>HUG1_HUMAN (O75698) Protein HUG-1 (HOX11 upstream gene 1 protein)|
          Length = 362

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 142 GMRCPRGSRSPRTRGMALPSRGR 74
           G R PR +RSPR  G+    RGR
Sbjct: 204 GSRAPRAARSPRDNGIISGERGR 226

>CBX8_MOUSE (Q9QXV1) Chromobox protein homolog 8 (Polycomb 3 homolog) (Pc3)|
           (MPc3)
          Length = 362

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 148 TRGMRCPRGSRSPRTRGMALPSRGRSQRRGAGMVPEATFSARTR 17
           TRG+R P   RSP  + +A  SR R   R  G+ P  + ++  R
Sbjct: 99  TRGIRIPYPGRSP--QDLASTSRAREGLRNTGLPPPGSSTSTCR 140

>GUDP_ECOLI (Q46916) Probable glucarate transporter (D-glucarate permease)|
          Length = 450

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 141 VCDVLAGVVAHVHAEWLCRRVGALS 67
           VC  + GV+  + ++WL RR G+L+
Sbjct: 299 VCGFIGGVLGGIISDWLMRRTGSLN 323

>FUSC3_FUSCU (Q8J1X7) Allergen Fus c 3|
          Length = 450

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
 Frame = +2

Query: 11  PVTRPRRKCRLRHH---------ASSSALRAPTRRQSHSACTWATTPARTSH 139
           PVTRPR+  R R           AS  A  + T   +HS    A +P+ TSH
Sbjct: 269 PVTRPRKPARARRQKKEPRKLSDASQGARSSSTGGTAHSVSD-AASPSSTSH 319

>ZDH12_RAT (Q6DGF5) Probable palmitoyltransferase ZDHHC12 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 12) (DHHC-12)
          Length = 267

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 2   TSYPVTRPRRKCRLRHHASSSALRAPTRRQSHSACTWATTPART 133
           T++      R   LR   S+   R PTR  +H  C W + P  T
Sbjct: 210 TTWEFISSHRIAYLRQRTSNPFDRGPTRNLAHFFCGWPSGPWET 253

>ZDH12_MOUSE (Q8VC90) Probable palmitoyltransferase ZDHHC12 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 12) (DHHC-12)
          Length = 267

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 2   TSYPVTRPRRKCRLRHHASSSALRAPTRRQSHSACTWATTPART 133
           T++      R   LR   S+   R PTR  +H  C W + P  T
Sbjct: 210 TTWEFISSHRIAYLRQRTSNPFDRGPTRNLAHFFCGWPSGPWET 253

>ESR2_ANGJA (O13012) Estrogen receptor beta (ER-beta)|
          Length = 573

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
 Frame = -2

Query: 151 GTRGMRCP----RGSRSPRTRGMALPSRG-RSQRRGAGMVP---EATFSART 20
           G R  RC     R  R P  R +A    G R+QRRG G+VP   EA  SA T
Sbjct: 240 GVRRERCTYRGARHRRMPHIRELAGTGGGARTQRRGEGVVPQTQEAQSSALT 291

>SPT6H_MOUSE (Q62383) Transcription elongation factor SPT6|
          Length = 1726

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 312 AVAGEVWRQEAGEGELRALRRPALPP 235
           A+AGE+++ E GE    A+  P  PP
Sbjct: 144 AIAGEIFQDEEGEEGQEAVEAPMAPP 169

>PCDB9_HUMAN (Q9Y5E1) Protocadherin beta 9 precursor (PCDH-beta9) (Protocadherin|
           3H)
          Length = 797

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 247 GPTESTEFSFTRFLTPHLAGYRG 315
           G +E+ EF F + +TPHL  +RG
Sbjct: 757 GGSETGEFKFLKPITPHLPPHRG 779

>NNP1_HUMAN (P56182) NNP-1 protein (Novel nuclear protein 1) (Nucleolar protein|
           Nop52) (D21S2056E)
          Length = 461

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 127 RGSRSPRTRGMALPSRGRSQRRGAGMVPEATFSA 26
           +G + P + GM    R RS+RRG G  PEA   A
Sbjct: 376 KGEKEPPSPGM---ERKRSRRRGVGADPEARAEA 406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,842,473
Number of Sequences: 219361
Number of extensions: 685563
Number of successful extensions: 2888
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2879
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)