ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast73f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.1
2gb|AC125378.3| Mus musculus BAC clone RP23-52N17 from chromosome... 40 4.1
3gb|AC159149.10| Mus musculus 10 BAC RP23-56F17 (Roswell Park Can... 40 4.1
4gb|AF525299.1| Pseudonocardia autotrophica P-450 gene cluster, p... 40 4.1
5gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 4.1
6gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete ... 40 4.1
7dbj|AK132659.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 4.1
8gb|AC109193.16| Mus musculus chromosome 5, clone RP24-352I22, co... 40 4.1
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
10gb|AC159372.1| Mus musculus BAC clone RP24-285I4 from chromosome... 40 4.1
11gb|AC055736.20|AC055736 Homo sapiens 12 BAC RP11-1020M18 (Roswel... 40 4.1
12gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 ge... 40 4.1
13gb|AY827104.1| Pseudonocardia autotrophica BCRC12444 fad gene cl... 40 4.1
14gb|AC127225.5| Mus musculus BAC clone RP24-499N1 from 3, complet... 40 4.1
15gb|AC155637.4| Mus musculus 10 BAC RP24-227O16 (Roswell Park Can... 40 4.1
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.1

>gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0079P23, complete sequence
          Length = 125090

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   atcccctccctcccccaacc 180
             ||||||||||||||||||||
Sbjct: 40831 atcccctccctcccccaacc 40850



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>gb|AC125378.3| Mus musculus BAC clone RP23-52N17 from chromosome 5, complete
            sequence
          Length = 127270

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 191  agccctaccccaccccaccc 210
            ||||||||||||||||||||
Sbjct: 3509 agccctaccccaccccaccc 3528



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>gb|AC159149.10| Mus musculus 10 BAC RP23-56F17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 219585

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   agccctaccccaccccaccc 210
             ||||||||||||||||||||
Sbjct: 58178 agccctaccccaccccaccc 58159



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>gb|AF525299.1| Pseudonocardia autotrophica P-450 gene cluster, partial sequence
          Length = 4770

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 cgccgatctccgcgccgccg 307
           ||||||||||||||||||||
Sbjct: 413 cgccgatctccgcgccgccg 394



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 288     cgccgatctccgcgccgccg 307
               ||||||||||||||||||||
Sbjct: 1088670 cgccgatctccgcgccgccg 1088689



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>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
          Length = 102433

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  gatcccctccctcccccaac 179
            ||||||||||||||||||||
Sbjct: 2589 gatcccctccctcccccaac 2608



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>dbj|AK132659.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921508H18 product:unclassifiable, full
           insert sequence
          Length = 2124

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 187 gccgagccctaccccaccccaccc 210
           ||||||||| ||||||||||||||
Sbjct: 294 gccgagccccaccccaccccaccc 317



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>gb|AC109193.16| Mus musculus chromosome 5, clone RP24-352I22, complete sequence
          Length = 144094

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   agccctaccccaccccaccc 210
             ||||||||||||||||||||
Sbjct: 98422 agccctaccccaccccaccc 98441



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 161      atcccctccctcccccaacc 180
                ||||||||||||||||||||
Sbjct: 25102367 atcccctccctcccccaacc 25102386



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>gb|AC159372.1| Mus musculus BAC clone RP24-285I4 from chromosome 9, complete sequence
          Length = 171391

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 187    gccgagccctaccccaccccaccc 210
              ||||||||| ||||||||||||||
Sbjct: 126465 gccgagccccaccccaccccaccc 126488



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>gb|AC055736.20|AC055736 Homo sapiens 12 BAC RP11-1020M18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 150902

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   agccctaccccaccccaccc 210
             ||||||||||||||||||||
Sbjct: 14848 agccctaccccaccccaccc 14829



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>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence
          Length = 215241

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   gatcccctccctcccccaac 179
             ||||||||||||||||||||
Sbjct: 30250 gatcccctccctcccccaac 30269



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>gb|AY827104.1| Pseudonocardia autotrophica BCRC12444 fad gene cluster, partial
           sequence
          Length = 4656

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 cgccgatctccgcgccgccg 307
           ||||||||||||||||||||
Sbjct: 411 cgccgatctccgcgccgccg 392



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>gb|AC127225.5| Mus musculus BAC clone RP24-499N1 from 3, complete sequence
          Length = 190949

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    ccctaccccaccccacccgc 212
              ||||||||||||||||||||
Sbjct: 111923 ccctaccccaccccacccgc 111942



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>gb|AC155637.4| Mus musculus 10 BAC RP24-227O16 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 159189

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   agccctaccccaccccaccc 210
             ||||||||||||||||||||
Sbjct: 39206 agccctaccccaccccaccc 39225



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 161      atcccctccctcccccaacc 180
                ||||||||||||||||||||
Sbjct: 25413386 atcccctccctcccccaacc 25413405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,052,635
Number of Sequences: 3902068
Number of extensions: 2052635
Number of successful extensions: 47746
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47642
Number of HSP's gapped (non-prelim): 104
length of query: 309
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 287
effective length of database: 17,147,199,772
effective search space: 4921246334564
effective search space used: 4921246334564
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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