| Clone Name | bast73f05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104299.1| Zea mays PCO075569 mRNA sequence Length = 2139 Score = 373 bits (188), Expect = e-100 Identities = 326/372 (87%) Strand = Plus / Plus Query: 78 acccgccgcgtccgtcgacccggacgtcgcgctcgcctacaagttccccgaggtctcctt 137 |||||||||| |||| ||||| |||| ||||||| || ||||||||||||| || || Sbjct: 59 acccgccgcgcccgtggaccccatggtcgtgctcgcccacgagttccccgaggtgtcatt 118 Query: 138 cgcctacgacgagagggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcgga 197 || ||||||||||||||| || ||| ||||||||||||| || || |||||||||| || Sbjct: 119 cgactacgacgagagggatgtagcgttgtacgcgctcggggttggtgcctgcggcgatga 178 Query: 198 cgccgtcgacgacaaggagctccacctcgtgcaccacagggacgggcagcgccacatcaa 257 |||||||||||| |||||||| ||| ||||| |||||||||| ||||||| ||||| || Sbjct: 179 cgccgtcgacgagaaggagcttcacttcgtgtaccacagggatgggcagccacacattaa 238 Query: 258 ggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattgt 317 | | |||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||| Sbjct: 239 gacccttcctacttttgtttctttatttcccaacaagaacagcaatgggcttggatttgt 298 Query: 318 taatgtgcctggcattcacttcgatgcaagccttctattgcacggtcaacaatacataga 377 | ||||||||||| || |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 299 tgatgtgcctggccttaactttgatgcaagccttctactgcatggtcaacaatacataga 358 Query: 378 gatctacaagccaatcccttcatgtgccagtgttgtaaacaaggttaaggtagctggttt 437 |||||| | |||||||||||| | ||||||||||||||||| |||||| ||||||||||| Sbjct: 359 gatctataggccaatcccttcgtatgccagtgttgtaaacagggttaaagtagctggttt 418 Query: 438 gcacgacaaggg 449 |||||||||||| Sbjct: 419 gcacgacaaggg 430
>dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B15, full insert sequence Length = 1256 Score = 369 bits (186), Expect = 6e-99 Identities = 344/394 (87%), Gaps = 2/394 (0%) Strand = Plus / Plus Query: 77 cacccgccgcgtccgtcgacccggacgtcgcgctcgcctacaagttccccgaggtctcct 136 |||| |||||| |||||||||| || | || |||| || ||| |||||||||||||||| Sbjct: 109 caccagccgcggccgtcgaccccgaggccgtgctctcccacagcttccccgaggtctcct 168 Query: 137 tcgcctacgacgagagggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcgg 196 ||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||| Sbjct: 169 tcgcctacgacgagagggatgtggcgctgtacgcgctcggagtcggggcgtgcggcgcgg 228 Query: 197 acgccgtcgacgacaaggagctccacctcgtgcaccacagggacgggcagcgccacatca 256 ||||| ||||||| |||||||| ||||| ||| ||||||||||||| |||| ||||||| Sbjct: 229 acgccatcgacgagaaggagctgcacctggtgtaccacagggacggccagccacacatca 288 Query: 257 aggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattg 316 |||| |||||||| |||| ||||||||||||| ||||||||||||||||| |||||||| Sbjct: 289 aggctcttcctacttttgcttctttatttcctttcaagaacagcaatgggcttggaattg 348 Query: 317 ttaatgtgcctggcattcacttcgatgcaagccttctattgcacggtcaacaatacatag 376 || ||||||||||| || |||| || ||||||||||||||||| |||||||| ||||||| Sbjct: 349 ttgatgtgcctggccttaactttgacgcaagccttctattgcatggtcaacattacatag 408 Query: 377 agatctacaagccaatcccttcatgtgccagtgttgtaaacaaggttaaggtagctggtt 436 |||| ||||||||||| | ||| |||||| ||||||||||||| ||| ||||||| | Sbjct: 409 agatatacaagccaattcattcgcgtgccaatgttgtaaacaagaccaagatagctggct 468 Query: 437 tgcacgac-aagggaaagc-actattctcgagat 468 |||| ||| |||||||||| |||||||| ||||| Sbjct: 469 tgcatgacaaagggaaagcaactattcttgagat 502
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 151 agggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcggacgccgtcgacgac 210 ||||| |||||||||||||||||||| || ||||| ||||||||||||||| ||||||| Sbjct: 21241140 agggatgtggcgctgtacgcgctcggagtcggggcgtgcggcgcggacgccatcgacgag 21241081 Query: 211 aaggagctccacctcgtgcaccacagggacgggcagcgccacatcaagg 259 |||||||| ||||| ||| ||||||||||||| |||| |||||||||| Sbjct: 21241080 aaggagctgcacctggtgtaccacagggacggccagccacacatcaagg 21241032 Score = 91.7 bits (46), Expect = 2e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 257 aggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattg 316 |||| |||||||| |||| ||||||||||||| ||||||||||||||||| |||||||| Sbjct: 21240153 aggctcttcctacttttgcttctttatttcctttcaagaacagcaatgggcttggaattg 21240094 Query: 317 ttaatgtgcctggc 330 || ||||||||||| Sbjct: 21240093 ttgatgtgcctggc 21240080 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 343 gcaagccttctattgcacggtcaacaatacatagagatctacaagccaat 392 ||||||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct: 21239883 gcaagccttctattgcatggtcaacattacatagagatatacaagccaat 21239834 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 128 aggtctccttcgcctacgacgagagg 153 |||||||||||||||||||||||||| Sbjct: 21241280 aggtctccttcgcctacgacgagagg 21241255
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 151 agggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcggacgccgtcgacgac 210 ||||| |||||||||||||||||||| || ||||| ||||||||||||||| ||||||| Sbjct: 111897 agggatgtggcgctgtacgcgctcggagtcggggcgtgcggcgcggacgccatcgacgag 111838 Query: 211 aaggagctccacctcgtgcaccacagggacgggcagcgccacatcaagg 259 |||||||| ||||| ||| ||||||||||||| |||| |||||||||| Sbjct: 111837 aaggagctgcacctggtgtaccacagggacggccagccacacatcaagg 111789 Score = 91.7 bits (46), Expect = 2e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 257 aggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattg 316 |||| |||||||| |||| ||||||||||||| ||||||||||||||||| |||||||| Sbjct: 110910 aggctcttcctacttttgcttctttatttcctttcaagaacagcaatgggcttggaattg 110851 Query: 317 ttaatgtgcctggc 330 || ||||||||||| Sbjct: 110850 ttgatgtgcctggc 110837 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 343 gcaagccttctattgcacggtcaacaatacatagagatctacaagccaat 392 ||||||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct: 110640 gcaagccttctattgcatggtcaacattacatagagatatacaagccaat 110591 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 128 aggtctccttcgcctacgacgagagg 153 |||||||||||||||||||||||||| Sbjct: 112037 aggtctccttcgcctacgacgagagg 112012
>dbj|AB224367.1| Aspergillus oryzae cDNA, contig sequence: AoEST1212 Length = 620 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 ggaggagcggccatggcgacga 70 |||||||||||||||||||||| Sbjct: 403 ggaggagcggccatggcgacga 382
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 49 ggaggagcggccatggcgacga 70 |||||||||||||||||||||| Sbjct: 2282037 ggaggagcggccatggcgacga 2282058
>gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L24 genomic sequence, complete sequence Length = 90459 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 caatacatagagatctacaag 387 ||||||||||||||||||||| Sbjct: 77657 caatacatagagatctacaag 77677
>gb|AY971525.1| Myxobacter sp. HK1 putative Ser/Thr kinase gene, complete cds Length = 1062 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 ctgtacgcgctcggcgtgggggcct 187 ||||||||||||||||||| ||||| Sbjct: 727 ctgtacgcgctcggcgtggtggcct 751
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 cccggcgaccggacgcagcag 47 ||||||||||||||||||||| Sbjct: 5696221 cccggcgaccggacgcagcag 5696201 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ggacgggcagcgccacatca 256 |||||||||||||||||||| Sbjct: 2422668 ggacgggcagcgccacatca 2422649
>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5 Length = 74968 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 tgtttctttatttcctaacaa 293 ||||||||||||||||||||| Sbjct: 70214 tgtttctttatttcctaacaa 70234
>ref|XM_367786.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07697.4) partial mRNA Length = 642 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 113 cctacaagttccccgaggtctccttcgcctacgacg 148 |||||||| |||||||| || | ||||||||||||| Sbjct: 17 cctacaagctccccgagctcccattcgcctacgacg 52
>emb|AL645585.11| Human DNA sequence from clone RP13-520K9 on chromosome X Contains a novel gene (FLJ35782), complete sequence Length = 55870 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cctttgtttctttatttcct 288 |||||||||||||||||||| Sbjct: 43710 cctttgtttctttatttcct 43691
>emb|AL391280.15| Human DNA sequence from clone RP13-128O4 on chromosome X Contains the 3' end of the gene for a novel protein similar to zizimin1 (FLJ32122), the IL13RA1 gene for interleukin 13 receptor, alpha 1 (NR4, IL-13RA, IL-13Ra), a novel pseudogene and a CpG island, complete sequence Length = 153026 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 caacaatacatagagatcta 383 |||||||||||||||||||| Sbjct: 145024 caacaatacatagagatcta 145043
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gggcacccgccgcgtccgtc 93 |||||||||||||||||||| Sbjct: 920188 gggcacccgccgcgtccgtc 920169
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cggccatggcgacgaacggg 75 |||||||||||||||||||| Sbjct: 31448 cggccatggcgacgaacggg 31467
>emb|AJ131817.1|SCO131817 Streptomyces coelicolor wdpA gene Length = 4910 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cggccatggcgacgaacggg 75 |||||||||||||||||||| Sbjct: 4846 cggccatggcgacgaacggg 4865
>emb|CR788244.9| Zebrafish DNA sequence from clone DKEY-254A16 in linkage group 18, complete sequence Length = 208154 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ccggacgcagcagcggagga 54 |||||||||||||||||||| Sbjct: 184604 ccggacgcagcagcggagga 184585
>ref|XM_682842.1| PREDICTED: Danio rerio similar to ubiquitin specific protease 31 (LOC559497), partial mRNA Length = 910 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ccggacgcagcagcggagga 54 |||||||||||||||||||| Sbjct: 181 ccggacgcagcagcggagga 200
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 79 cccgccgcgtccgtcgacccggacgtcg 106 ||||||||| ||| |||||||||||||| Sbjct: 1149431 cccgccgcgcccgacgacccggacgtcg 1149458
>emb|BX324229.7| Zebrafish DNA sequence from clone RP71-10D19, complete sequence Length = 72241 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tgtttctttatttcctaaca 292 |||||||||||||||||||| Sbjct: 4783 tgtttctttatttcctaaca 4802
>emb|BX908749.6| Zebrafish DNA sequence from clone DKEY-247F18 in linkage group 18, complete sequence Length = 186014 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ccggacgcagcagcggagga 54 |||||||||||||||||||| Sbjct: 184737 ccggacgcagcagcggagga 184718
>gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p, complete sequence Length = 181321 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ccccgaggtctccttcgcct 142 |||||||||||||||||||| Sbjct: 173489 ccccgaggtctccttcgcct 173508
>gb|DQ368598.1| Sus scrofa p53-regulated receptor for death and life mRNA, complete cds Length = 3092 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gggacgtggcgctgtacgcg 171 |||||||||||||||||||| Sbjct: 1166 gggacgtggcgctgtacgcg 1185
>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene cluster, partial sequence Length = 127559 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 gtcgacccggacgtcgcgct 110 |||||||||||||||||||| Sbjct: 109385 gtcgacccggacgtcgcgct 109366
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cgtgggggcctgcggcgcgg 196 |||||||||||||||||||| Sbjct: 1059494 cgtgggggcctgcggcgcgg 1059475
>gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3p, complete sequence Length = 160702 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ccccgaggtctccttcgcct 142 |||||||||||||||||||| Sbjct: 44751 ccccgaggtctccttcgcct 44732
>gb|AC012462.5| Homo sapiens BAC clone RP11-566P21 from 2, complete sequence Length = 143947 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ttgttaatgtgcctggcatt 333 |||||||||||||||||||| Sbjct: 111069 ttgttaatgtgcctggcatt 111050
>gb|AC114632.9| Mus musculus chromosome 5, clone RP24-114E20, complete sequence Length = 160308 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cctttgtttctttatttcct 288 |||||||||||||||||||| Sbjct: 60789 cctttgtttctttatttcct 60770
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ggcgctgtacgcgctcggcg 178 |||||||||||||||||||| Sbjct: 795996 ggcgctgtacgcgctcggcg 795977
>emb|BX908723.12| Zebrafish DNA sequence from clone DKEY-28K21 in linkage group 18, complete sequence Length = 78282 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ccggacgcagcagcggagga 54 |||||||||||||||||||| Sbjct: 723 ccggacgcagcagcggagga 704
>gb|AF092866.1|AF092866 Thermus filiformis strain Tok6A1 NAD-dependent DNA ligase gene, partial cds Length = 1611 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 tcgcgctcgcctacaagttccccg 127 |||| ||||||||||||||||||| Sbjct: 782 tcgccctcgcctacaagttccccg 805
>gb|AF061572.1|AF061572 Thermus filiformis thermostable DNA ligase gene, complete cds Length = 2121 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 tcgcgctcgcctacaagttccccg 127 |||| ||||||||||||||||||| Sbjct: 1014 tcgccctcgcctacaagttccccg 1037
>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence Length = 173574 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 catgtgccagtgttgtaaac 417 |||||||||||||||||||| Sbjct: 69488 catgtgccagtgttgtaaac 69507
>gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, complete sequence Length = 210088 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 atttcctaacaagaacagcaatgg 305 ||||||| |||||||||||||||| Sbjct: 90283 atttcctgacaagaacagcaatgg 90260
>gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182517 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 catgtgccagtgttgtaaac 417 |||||||||||||||||||| Sbjct: 156128 catgtgccagtgttgtaaac 156147
>emb|AL591865.8| Mouse DNA sequence from clone RP23-14G21 on chromosome 5, complete sequence Length = 251952 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 atttcctaacaagaacagcaatgg 305 ||||||||| |||||||||||||| Sbjct: 28272 atttcctaagaagaacagcaatgg 28295 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,335,550 Number of Sequences: 3902068 Number of extensions: 3335550 Number of successful extensions: 67269 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66545 Number of HSP's gapped (non-prelim): 724 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)