ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast73f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY104299.1| Zea mays PCO075569 mRNA sequence 373 e-100
2dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 369 6e-99
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
4dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5dbj|AB224367.1| Aspergillus oryzae cDNA, contig sequence: AoEST1212 44 0.41
6dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 44 0.41
7gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L... 42 1.6
8gb|AY971525.1| Myxobacter sp. HK1 putative Ser/Thr kinase gene, ... 42 1.6
9dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.6
10dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.6
11ref|XM_367786.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 6.5
12emb|AL645585.11| Human DNA sequence from clone RP13-520K9 on chr... 40 6.5
13emb|AL391280.15| Human DNA sequence from clone RP13-128O4 on chr... 40 6.5
14gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 6.5
15emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 40 6.5
16emb|AJ131817.1|SCO131817 Streptomyces coelicolor wdpA gene 40 6.5
17emb|CR788244.9| Zebrafish DNA sequence from clone DKEY-254A16 in... 40 6.5
18ref|XM_682842.1| PREDICTED: Danio rerio similar to ubiquitin spe... 40 6.5
19gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.5
20emb|BX324229.7| Zebrafish DNA sequence from clone RP71-10D19, co... 40 6.5
21emb|BX908749.6| Zebrafish DNA sequence from clone DKEY-247F18 in... 40 6.5
22gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p... 40 6.5
23gb|DQ368598.1| Sus scrofa p53-regulated receptor for death and l... 40 6.5
24gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 dapto... 40 6.5
25gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.5
26gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3... 40 6.5
27gb|AC012462.5| Homo sapiens BAC clone RP11-566P21 from 2, comple... 40 6.5
28gb|AC114632.9| Mus musculus chromosome 5, clone RP24-114E20, com... 40 6.5
29emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.5
30emb|BX908723.12| Zebrafish DNA sequence from clone DKEY-28K21 in... 40 6.5
31gb|AF092866.1|AF092866 Thermus filiformis strain Tok6A1 NAD-depe... 40 6.5
32gb|AF061572.1|AF061572 Thermus filiformis thermostable DNA ligas... 40 6.5
33gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complet... 40 6.5
34gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, comple... 40 6.5
35gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cance... 40 6.5
36emb|AL591865.8| Mouse DNA sequence from clone RP23-14G21 on chro... 40 6.5

>gb|AY104299.1| Zea mays PCO075569 mRNA sequence
          Length = 2139

 Score =  373 bits (188), Expect = e-100
 Identities = 326/372 (87%)
 Strand = Plus / Plus

                                                                       
Query: 78  acccgccgcgtccgtcgacccggacgtcgcgctcgcctacaagttccccgaggtctcctt 137
           |||||||||| |||| |||||    |||| ||||||| || ||||||||||||| || ||
Sbjct: 59  acccgccgcgcccgtggaccccatggtcgtgctcgcccacgagttccccgaggtgtcatt 118

                                                                       
Query: 138 cgcctacgacgagagggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcgga 197
           || ||||||||||||||| || ||| ||||||||||||| || || ||||||||||  ||
Sbjct: 119 cgactacgacgagagggatgtagcgttgtacgcgctcggggttggtgcctgcggcgatga 178

                                                                       
Query: 198 cgccgtcgacgacaaggagctccacctcgtgcaccacagggacgggcagcgccacatcaa 257
           |||||||||||| |||||||| ||| ||||| |||||||||| |||||||  ||||| ||
Sbjct: 179 cgccgtcgacgagaaggagcttcacttcgtgtaccacagggatgggcagccacacattaa 238

                                                                       
Query: 258 ggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattgt 317
           | | |||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 239 gacccttcctacttttgtttctttatttcccaacaagaacagcaatgggcttggatttgt 298

                                                                       
Query: 318 taatgtgcctggcattcacttcgatgcaagccttctattgcacggtcaacaatacataga 377
           | ||||||||||| || |||| ||||||||||||||| |||| |||||||||||||||||
Sbjct: 299 tgatgtgcctggccttaactttgatgcaagccttctactgcatggtcaacaatacataga 358

                                                                       
Query: 378 gatctacaagccaatcccttcatgtgccagtgttgtaaacaaggttaaggtagctggttt 437
           |||||| | |||||||||||| | ||||||||||||||||| |||||| |||||||||||
Sbjct: 359 gatctataggccaatcccttcgtatgccagtgttgtaaacagggttaaagtagctggttt 418

                       
Query: 438 gcacgacaaggg 449
           ||||||||||||
Sbjct: 419 gcacgacaaggg 430



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>dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B15, full
           insert sequence
          Length = 1256

 Score =  369 bits (186), Expect = 6e-99
 Identities = 344/394 (87%), Gaps = 2/394 (0%)
 Strand = Plus / Plus

                                                                       
Query: 77  cacccgccgcgtccgtcgacccggacgtcgcgctcgcctacaagttccccgaggtctcct 136
           |||| |||||| |||||||||| || | || |||| || |||  ||||||||||||||||
Sbjct: 109 caccagccgcggccgtcgaccccgaggccgtgctctcccacagcttccccgaggtctcct 168

                                                                       
Query: 137 tcgcctacgacgagagggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcgg 196
           ||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 169 tcgcctacgacgagagggatgtggcgctgtacgcgctcggagtcggggcgtgcggcgcgg 228

                                                                       
Query: 197 acgccgtcgacgacaaggagctccacctcgtgcaccacagggacgggcagcgccacatca 256
           ||||| ||||||| |||||||| ||||| ||| ||||||||||||| ||||  |||||||
Sbjct: 229 acgccatcgacgagaaggagctgcacctggtgtaccacagggacggccagccacacatca 288

                                                                       
Query: 257 aggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattg 316
           |||| |||||||| |||| |||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 289 aggctcttcctacttttgcttctttatttcctttcaagaacagcaatgggcttggaattg 348

                                                                       
Query: 317 ttaatgtgcctggcattcacttcgatgcaagccttctattgcacggtcaacaatacatag 376
           || ||||||||||| || |||| || ||||||||||||||||| |||||||| |||||||
Sbjct: 349 ttgatgtgcctggccttaactttgacgcaagccttctattgcatggtcaacattacatag 408

                                                                       
Query: 377 agatctacaagccaatcccttcatgtgccagtgttgtaaacaaggttaaggtagctggtt 436
           |||| ||||||||||| | |||  |||||| |||||||||||||   ||| ||||||| |
Sbjct: 409 agatatacaagccaattcattcgcgtgccaatgttgtaaacaagaccaagatagctggct 468

                                             
Query: 437 tgcacgac-aagggaaagc-actattctcgagat 468
           |||| ||| |||||||||| |||||||| |||||
Sbjct: 469 tgcatgacaaagggaaagcaactattcttgagat 502



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 151      agggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcggacgccgtcgacgac 210
                ||||| |||||||||||||||||||| || ||||| ||||||||||||||| ||||||| 
Sbjct: 21241140 agggatgtggcgctgtacgcgctcggagtcggggcgtgcggcgcggacgccatcgacgag 21241081

                                                                 
Query: 211      aaggagctccacctcgtgcaccacagggacgggcagcgccacatcaagg 259
                |||||||| ||||| ||| ||||||||||||| ||||  ||||||||||
Sbjct: 21241080 aaggagctgcacctggtgtaccacagggacggccagccacacatcaagg 21241032



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 257      aggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattg 316
                |||| |||||||| |||| |||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 21240153 aggctcttcctacttttgcttctttatttcctttcaagaacagcaatgggcttggaattg 21240094

                              
Query: 317      ttaatgtgcctggc 330
                || |||||||||||
Sbjct: 21240093 ttgatgtgcctggc 21240080



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                  
Query: 343      gcaagccttctattgcacggtcaacaatacatagagatctacaagccaat 392
                ||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 21239883 gcaagccttctattgcatggtcaacattacatagagatatacaagccaat 21239834



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 128      aggtctccttcgcctacgacgagagg 153
                ||||||||||||||||||||||||||
Sbjct: 21241280 aggtctccttcgcctacgacgagagg 21241255



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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone: P0705E11
          Length = 140729

 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                          
Query: 151    agggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcggacgccgtcgacgac 210
              ||||| |||||||||||||||||||| || ||||| ||||||||||||||| ||||||| 
Sbjct: 111897 agggatgtggcgctgtacgcgctcggagtcggggcgtgcggcgcggacgccatcgacgag 111838

                                                               
Query: 211    aaggagctccacctcgtgcaccacagggacgggcagcgccacatcaagg 259
              |||||||| ||||| ||| ||||||||||||| ||||  ||||||||||
Sbjct: 111837 aaggagctgcacctggtgtaccacagggacggccagccacacatcaagg 111789



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                          
Query: 257    aggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattg 316
              |||| |||||||| |||| |||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 110910 aggctcttcctacttttgcttctttatttcctttcaagaacagcaatgggcttggaattg 110851

                            
Query: 317    ttaatgtgcctggc 330
              || |||||||||||
Sbjct: 110850 ttgatgtgcctggc 110837



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                
Query: 343    gcaagccttctattgcacggtcaacaatacatagagatctacaagccaat 392
              ||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 110640 gcaagccttctattgcatggtcaacattacatagagatatacaagccaat 110591



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 128    aggtctccttcgcctacgacgagagg 153
              ||||||||||||||||||||||||||
Sbjct: 112037 aggtctccttcgcctacgacgagagg 112012



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>dbj|AB224367.1| Aspergillus oryzae cDNA, contig sequence: AoEST1212
          Length = 620

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 49  ggaggagcggccatggcgacga 70
           ||||||||||||||||||||||
Sbjct: 403 ggaggagcggccatggcgacga 382



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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 49      ggaggagcggccatggcgacga 70
               ||||||||||||||||||||||
Sbjct: 2282037 ggaggagcggccatggcgacga 2282058



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>gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L24 genomic sequence, complete
             sequence
          Length = 90459

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 367   caatacatagagatctacaag 387
             |||||||||||||||||||||
Sbjct: 77657 caatacatagagatctacaag 77677



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>gb|AY971525.1| Myxobacter sp. HK1 putative Ser/Thr kinase gene, complete cds
          Length = 1062

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 163 ctgtacgcgctcggcgtgggggcct 187
           ||||||||||||||||||| |||||
Sbjct: 727 ctgtacgcgctcggcgtggtggcct 751



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 27      cccggcgaccggacgcagcag 47
               |||||||||||||||||||||
Sbjct: 5696221 cccggcgaccggacgcagcag 5696201



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 237     ggacgggcagcgccacatca 256
               ||||||||||||||||||||
Sbjct: 2422668 ggacgggcagcgccacatca 2422649



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>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5
          Length = 74968

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 273   tgtttctttatttcctaacaa 293
             |||||||||||||||||||||
Sbjct: 70214 tgtttctttatttcctaacaa 70234



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>ref|XM_367786.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG07697.4) partial mRNA
          Length = 642

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 113 cctacaagttccccgaggtctccttcgcctacgacg 148
           |||||||| |||||||| || | |||||||||||||
Sbjct: 17  cctacaagctccccgagctcccattcgcctacgacg 52



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>emb|AL645585.11| Human DNA sequence from clone RP13-520K9 on chromosome X Contains a
             novel gene (FLJ35782), complete sequence
          Length = 55870

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cctttgtttctttatttcct 288
             ||||||||||||||||||||
Sbjct: 43710 cctttgtttctttatttcct 43691



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>emb|AL391280.15| Human DNA sequence from clone RP13-128O4 on chromosome X Contains the 3'
              end of the gene for a novel protein similar to zizimin1
              (FLJ32122), the IL13RA1 gene for interleukin 13 receptor,
              alpha 1 (NR4, IL-13RA, IL-13Ra), a novel pseudogene and a
              CpG island, complete sequence
          Length = 153026

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    caacaatacatagagatcta 383
              ||||||||||||||||||||
Sbjct: 145024 caacaatacatagagatcta 145043



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     gggcacccgccgcgtccgtc 93
              ||||||||||||||||||||
Sbjct: 920188 gggcacccgccgcgtccgtc 920169



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>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    cggccatggcgacgaacggg 75
             ||||||||||||||||||||
Sbjct: 31448 cggccatggcgacgaacggg 31467



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>emb|AJ131817.1|SCO131817 Streptomyces coelicolor wdpA gene
          Length = 4910

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   cggccatggcgacgaacggg 75
            ||||||||||||||||||||
Sbjct: 4846 cggccatggcgacgaacggg 4865



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>emb|CR788244.9| Zebrafish DNA sequence from clone DKEY-254A16 in linkage group 18,
              complete sequence
          Length = 208154

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     ccggacgcagcagcggagga 54
              ||||||||||||||||||||
Sbjct: 184604 ccggacgcagcagcggagga 184585



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>ref|XM_682842.1| PREDICTED: Danio rerio similar to ubiquitin specific protease 31
           (LOC559497), partial mRNA
          Length = 910

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  ccggacgcagcagcggagga 54
           ||||||||||||||||||||
Sbjct: 181 ccggacgcagcagcggagga 200



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 79      cccgccgcgtccgtcgacccggacgtcg 106
               ||||||||| ||| ||||||||||||||
Sbjct: 1149431 cccgccgcgcccgacgacccggacgtcg 1149458



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>emb|BX324229.7| Zebrafish DNA sequence from clone RP71-10D19, complete sequence
          Length = 72241

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  tgtttctttatttcctaaca 292
            ||||||||||||||||||||
Sbjct: 4783 tgtttctttatttcctaaca 4802



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>emb|BX908749.6| Zebrafish DNA sequence from clone DKEY-247F18 in linkage group 18,
              complete sequence
          Length = 186014

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     ccggacgcagcagcggagga 54
              ||||||||||||||||||||
Sbjct: 184737 ccggacgcagcagcggagga 184718



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>gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p, complete sequence
          Length = 181321

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    ccccgaggtctccttcgcct 142
              ||||||||||||||||||||
Sbjct: 173489 ccccgaggtctccttcgcct 173508



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>gb|DQ368598.1| Sus scrofa p53-regulated receptor for death and life mRNA, complete
            cds
          Length = 3092

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  gggacgtggcgctgtacgcg 171
            ||||||||||||||||||||
Sbjct: 1166 gggacgtggcgctgtacgcg 1185



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>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene
              cluster, partial sequence
          Length = 127559

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     gtcgacccggacgtcgcgct 110
              ||||||||||||||||||||
Sbjct: 109385 gtcgacccggacgtcgcgct 109366



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 177     cgtgggggcctgcggcgcgg 196
               ||||||||||||||||||||
Sbjct: 1059494 cgtgggggcctgcggcgcgg 1059475



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>gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3p, complete sequence
          Length = 160702

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ccccgaggtctccttcgcct 142
             ||||||||||||||||||||
Sbjct: 44751 ccccgaggtctccttcgcct 44732



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>gb|AC012462.5| Homo sapiens BAC clone RP11-566P21 from 2, complete sequence
          Length = 143947

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    ttgttaatgtgcctggcatt 333
              ||||||||||||||||||||
Sbjct: 111069 ttgttaatgtgcctggcatt 111050



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>gb|AC114632.9| Mus musculus chromosome 5, clone RP24-114E20, complete sequence
          Length = 160308

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cctttgtttctttatttcct 288
             ||||||||||||||||||||
Sbjct: 60789 cctttgtttctttatttcct 60770



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    ggcgctgtacgcgctcggcg 178
              ||||||||||||||||||||
Sbjct: 795996 ggcgctgtacgcgctcggcg 795977



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>emb|BX908723.12| Zebrafish DNA sequence from clone DKEY-28K21 in linkage group 18,
           complete sequence
          Length = 78282

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  ccggacgcagcagcggagga 54
           ||||||||||||||||||||
Sbjct: 723 ccggacgcagcagcggagga 704



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>gb|AF092866.1|AF092866 Thermus filiformis strain Tok6A1 NAD-dependent DNA ligase gene,
           partial cds
          Length = 1611

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 104 tcgcgctcgcctacaagttccccg 127
           |||| |||||||||||||||||||
Sbjct: 782 tcgccctcgcctacaagttccccg 805



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>gb|AF061572.1|AF061572 Thermus filiformis thermostable DNA ligase gene, complete cds
          Length = 2121

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 104  tcgcgctcgcctacaagttccccg 127
            |||| |||||||||||||||||||
Sbjct: 1014 tcgccctcgcctacaagttccccg 1037



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>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence
          Length = 173574

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   catgtgccagtgttgtaaac 417
             ||||||||||||||||||||
Sbjct: 69488 catgtgccagtgttgtaaac 69507



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>gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, complete sequence
          Length = 210088

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 282   atttcctaacaagaacagcaatgg 305
             ||||||| ||||||||||||||||
Sbjct: 90283 atttcctgacaagaacagcaatgg 90260



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>gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 182517

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    catgtgccagtgttgtaaac 417
              ||||||||||||||||||||
Sbjct: 156128 catgtgccagtgttgtaaac 156147



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>emb|AL591865.8| Mouse DNA sequence from clone RP23-14G21 on chromosome 5, complete
             sequence
          Length = 251952

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   atttcctaacaagaacagcaatgg 305
             ||||||||| ||||||||||||||
Sbjct: 28272 atttcctaagaagaacagcaatgg 28295


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,335,550
Number of Sequences: 3902068
Number of extensions: 3335550
Number of successful extensions: 67269
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66545
Number of HSP's gapped (non-prelim): 724
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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