ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast73f04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478126.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1458 Score = 139 bits (70), Expect = 1e-29 Identities = 109/122 (89%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcca 163 ||||||||||||||| ||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 24 ggcggcgcacgtgctcatgttcccgtgcccggtgcacggccacatcacctgcatgctcca 83 Query: 164 cttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaa 223 |||||| |||| ||||||| ||| ||||||||||| |||||||| |||| ||||||||| Sbjct: 84 cttcgccacgggcctcctcgccgctggcctccacgtcaccttcctccacagcgaccacaa 143 Query: 224 cc 225 || Sbjct: 144 cc 145 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 ttccctcccgtgacctgcgtcgtcgc 469 |||||||| ||||||||||||||||| Sbjct: 331 ttccctccggtgacctgcgtcgtcgc 356
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 139 bits (70), Expect = 1e-29 Identities = 109/122 (89%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcca 163 ||||||||||||||| ||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 17892156 ggcggcgcacgtgctcatgttcccgtgcccggtgcacggccacatcacctgcatgctcca 17892215 Query: 164 cttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaa 223 |||||| |||| ||||||| ||| ||||||||||| |||||||| |||| ||||||||| Sbjct: 17892216 cttcgccacgggcctcctcgccgctggcctccacgtcaccttcctccacagcgaccacaa 17892275 Query: 224 cc 225 || Sbjct: 17892276 cc 17892277 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcca 163 ||||||||||||||| || ||||||| ||| |||||||| ||||||||||||||| | || Sbjct: 18072727 ggcggcgcacgtgctcgtcttcccgttcccagcgcaggggcacatcaactgcatgatgca 18072668 Query: 164 cttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgacc 219 |||||| | || ||||||| ||||||||| ||||| |||||||||||| |||||| Sbjct: 18072667 cttcgccaccggcctcctcggcgccggcctgcacgtcaccttccttcactccgacc 18072612 Score = 111 bits (56), Expect = 2e-21 Identities = 104/120 (86%) Strand = Plus / Minus Query: 106 cggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccact 165 ||||||||||||| ||||||||| ||| |||||||||||| |||||||| | ||||||| Sbjct: 8381579 cggcgcacgtgctggtgttcccggccccagcgcagggccacctcaactgcttcctccact 8381520 Query: 166 tcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaacc 225 |||| ||| |||||| ||||||||||||||| |||||||| |||||| ||||||||| Sbjct: 8381519 tcgccacggccctcctccgcgccggcctccacgtcaccttcctccacacccaccacaacc 8381460 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Minus Query: 108 gcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccacttc 167 ||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 18061572 gcgcacgtgctcgtcttcccgtggccggtgcagggccacatcaactgcatgctccacttc 18061513 Query: 168 gctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 || | || |||||| || ||||||||||| |||||||| |||| |||||||| Sbjct: 18061512 gccaccggcctcctccgagcaggcctccacgtcaccttcctccacagcgaccaca 18061458 Score = 87.7 bits (44), Expect = 3e-14 Identities = 103/120 (85%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgt-gcccggcgcagggccacatcaactgcatgctcc 162 ||||||||||||||| || |||||| |||||| |||||||||||||||||||||| | | Sbjct: 17979521 ggcggcgcacgtgctcgtcttcccggcgcccgg-gcagggccacatcaactgcatgatgc 17979579 Query: 163 acttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 ||||||| | || ||| ||| |||||| || ||||| |||||||| ||||||||||||| Sbjct: 17979580 acttcgccaccggcctcgtcggcgccggtcttcacgtcaccttcctccacaccgaccaca 17979639 Score = 87.7 bits (44), Expect = 3e-14 Identities = 103/120 (85%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgt-gcccggcgcagggccacatcaactgcatgctcc 162 ||||||||||||||| || |||||| |||||| |||||||||||||||||||||| | | Sbjct: 17920400 ggcggcgcacgtgctcgtcttcccggcgcccgg-gcagggccacatcaactgcatgatgc 17920458 Query: 163 acttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 ||||||| | || ||| ||| |||||| || ||||| |||||||| ||||||||||||| Sbjct: 17920459 acttcgccaccggcctcgtcggcgccggtcttcacgtcaccttcctccacaccgaccaca 17920518 Score = 79.8 bits (40), Expect = 8e-12 Identities = 100/120 (83%) Strand = Plus / Plus Query: 106 cggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccact 165 |||||||||| || ||||||||||| ||| ||||||||| ||||| |||||||||| Sbjct: 18103743 cggcgcacgtcctcgtgttcccgtggccgattcagggccacctcaacgtcatgctccacc 18103802 Query: 166 tcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaacc 225 |||| | || |||| || ||||||| ||||||| |||||||| ||||||||| |||||| Sbjct: 18103803 tcgccgtggcgctcgccggcgccggcgtccacgtcaccttcctccacaccgactacaacc 18103862 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Minus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatca 150 |||||| |||||||| |||||||||||||||| |||||||||||||| Sbjct: 17897509 ggcggcacacgtgctcgtgttcccgtgcccggtgcagggccacatca 17897463 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 288 ctccggttcctgtccgtcaccgacggcctcccgaacgaccatccccgctc 337 ||||| |||||||||||| | ||||||||||| |||||||||||||||| Sbjct: 18150159 ctccgcttcctgtccgtcccggacggcctccccgacgaccatccccgctc 18150208 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 286 ggctccggttcctgtccgtcaccgacggcctcccgaacgaccatccccgc 335 ||||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct: 18103908 ggctccggttcatgtccgtcacggacggcctccccgacgaccacccccgc 18103957 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 185 cgccggcctccacgtgaccttccttcacaccgaccacaacc 225 ||||||| ||||||| |||||||| |||||||||||||||| Sbjct: 18150065 cgccggcgtccacgtcaccttcctccacaccgaccacaacc 18150105 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 441 ggcttccctcccgtgacctgcgtcgtcgctgacgg 475 ||||||||||| ||||||||||||||||| ||||| Sbjct: 17979855 ggcttccctccggtgacctgcgtcgtcgccgacgg 17979889 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctcccgaacgacca 328 ||||||||||||||| ||||| || ||||||||||||| ||||||| Sbjct: 17979687 ccgcggctccggttcatgtccatccccgacggcctccccgacgacca 17979733 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 441 ggcttccctcccgtgacctgcgtcgtcgctgacgg 475 ||||||||||| ||||||||||||||||| ||||| Sbjct: 17920734 ggcttccctccggtgacctgcgtcgtcgccgacgg 17920768 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctcccgaacgacca 328 ||||||||||||||| ||||| || ||||||||||||| ||||||| Sbjct: 17920566 ccgcggctccggttcatgtccatccccgacggcctccccgacgacca 17920612 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctccc 319 ||||||||||| ||||||||||| ||||||||||||| Sbjct: 8381415 ccgcggctccgcttcctgtccgtgcccgacggcctccc 8381378 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 441 ggcttccctcccgtgacctgcgtcgtcgc 469 ||||||||||| ||||||||||||||||| Sbjct: 18061251 ggcttccctccggtgacctgcgtcgtcgc 18061223 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 444 ttccctcccgtgacctgcgtcgtcgctgacgg 475 |||||||| ||||||||||||||||| ||||| Sbjct: 18072387 ttccctccggtgacctgcgtcgtcgccgacgg 18072356 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctcccgaacgacca 328 ||||| ||||| ||||||||| || ||||||||||||| ||||||| Sbjct: 18072561 ccgcgcctccgcttcctgtccatccccgacggcctccccgacgacca 18072515 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 ttccctcccgtgacctgcgtcgtcgc 469 |||||||| ||||||||||||||||| Sbjct: 17892463 ttccctccggtgacctgcgtcgtcgc 17892488
>dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0683C09 Length = 185139 Score = 139 bits (70), Expect = 1e-29 Identities = 109/122 (89%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcca 163 ||||||||||||||| ||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 119148 ggcggcgcacgtgctcatgttcccgtgcccggtgcacggccacatcacctgcatgctcca 119207 Query: 164 cttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaa 223 |||||| |||| ||||||| ||| ||||||||||| |||||||| |||| ||||||||| Sbjct: 119208 cttcgccacgggcctcctcgccgctggcctccacgtcaccttcctccacagcgaccacaa 119267 Query: 224 cc 225 || Sbjct: 119268 cc 119269 Score = 87.7 bits (44), Expect = 3e-14 Identities = 103/120 (85%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgt-gcccggcgcagggccacatcaactgcatgctcc 162 ||||||||||||||| || |||||| |||||| |||||||||||||||||||||| | | Sbjct: 147392 ggcggcgcacgtgctcgtcttcccggcgcccgg-gcagggccacatcaactgcatgatgc 147450 Query: 163 acttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 ||||||| | || ||| ||| |||||| || ||||| |||||||| ||||||||||||| Sbjct: 147451 acttcgccaccggcctcgtcggcgccggtcttcacgtcaccttcctccacaccgaccaca 147510 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Minus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatca 150 |||||| |||||||| |||||||||||||||| |||||||||||||| Sbjct: 124501 ggcggcacacgtgctcgtgttcccgtgcccggtgcagggccacatca 124455 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 441 ggcttccctcccgtgacctgcgtcgtcgctgacgg 475 ||||||||||| ||||||||||||||||| ||||| Sbjct: 147726 ggcttccctccggtgacctgcgtcgtcgccgacgg 147760 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctcccgaacgacca 328 ||||||||||||||| ||||| || ||||||||||||| ||||||| Sbjct: 147558 ccgcggctccggttcatgtccatccccgacggcctccccgacgacca 147604 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 ttccctcccgtgacctgcgtcgtcgc 469 |||||||| ||||||||||||||||| Sbjct: 119455 ttccctccggtgacctgcgtcgtcgc 119480
>ref|NM_186853.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1716 Score = 111 bits (56), Expect = 2e-21 Identities = 104/120 (86%) Strand = Plus / Plus Query: 106 cggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccact 165 ||||||||||||| ||||||||| ||| |||||||||||| |||||||| | ||||||| Sbjct: 269 cggcgcacgtgctggtgttcccggccccagcgcagggccacctcaactgcttcctccact 328 Query: 166 tcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaacc 225 |||| ||| |||||| ||||||||||||||| |||||||| |||||| ||||||||| Sbjct: 329 tcgccacggccctcctccgcgccggcctccacgtcaccttcctccacacccaccacaacc 388 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctccc 319 ||||||||||| ||||||||||| ||||||||||||| Sbjct: 433 ccgcggctccgcttcctgtccgtgcccgacggcctccc 470
>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0477A12 Length = 138141 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcca 163 ||||||||||||||| || ||||||| ||| |||||||| ||||||||||||||| | || Sbjct: 8033 ggcggcgcacgtgctcgtcttcccgttcccagcgcaggggcacatcaactgcatgatgca 7974 Query: 164 cttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgacc 219 |||||| | || ||||||| ||||||||| ||||| |||||||||||| |||||| Sbjct: 7973 cttcgccaccggcctcctcggcgccggcctgcacgtcaccttccttcactccgacc 7918 Score = 79.8 bits (40), Expect = 8e-12 Identities = 100/120 (83%) Strand = Plus / Plus Query: 106 cggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccact 165 |||||||||| || ||||||||||| ||| ||||||||| ||||| |||||||||| Sbjct: 39049 cggcgcacgtcctcgtgttcccgtggccgattcagggccacctcaacgtcatgctccacc 39108 Query: 166 tcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaacc 225 |||| | || |||| || ||||||| ||||||| |||||||| ||||||||| |||||| Sbjct: 39109 tcgccgtggcgctcgccggcgccggcgtccacgtcaccttcctccacaccgactacaacc 39168 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 288 ctccggttcctgtccgtcaccgacggcctcccgaacgaccatccccgctc 337 ||||| |||||||||||| | ||||||||||| |||||||||||||||| Sbjct: 85465 ctccgcttcctgtccgtcccggacggcctccccgacgaccatccccgctc 85514 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 286 ggctccggttcctgtccgtcaccgacggcctcccgaacgaccatccccgc 335 ||||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct: 39214 ggctccggttcatgtccgtcacggacggcctccccgacgaccacccccgc 39263 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 185 cgccggcctccacgtgaccttccttcacaccgaccacaacc 225 ||||||| ||||||| |||||||| |||||||||||||||| Sbjct: 85371 cgccggcgtccacgtcaccttcctccacaccgaccacaacc 85411 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 444 ttccctcccgtgacctgcgtcgtcgctgacgg 475 |||||||| ||||||||||||||||| ||||| Sbjct: 7693 ttccctccggtgacctgcgtcgtcgccgacgg 7662 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctcccgaacgacca 328 ||||| ||||| ||||||||| || ||||||||||||| ||||||| Sbjct: 7867 ccgcgcctccgcttcctgtccatccccgacggcctccccgacgacca 7821
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 111 bits (56), Expect = 2e-21 Identities = 104/120 (86%) Strand = Plus / Minus Query: 106 cggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccact 165 ||||||||||||| ||||||||| ||| |||||||||||| |||||||| | ||||||| Sbjct: 86677 cggcgcacgtgctggtgttcccggccccagcgcagggccacctcaactgcttcctccact 86618 Query: 166 tcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaacc 225 |||| ||| |||||| ||||||||||||||| |||||||| |||||| ||||||||| Sbjct: 86617 tcgccacggccctcctccgcgccggcctccacgtcaccttcctccacacccaccacaacc 86558 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctccc 319 ||||||||||| ||||||||||| ||||||||||||| Sbjct: 86513 ccgcggctccgcttcctgtccgtgcccgacggcctccc 86476
>dbj|AP005515.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0064M11 Length = 164263 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcca 163 ||||||||||||||| || ||||||| ||| |||||||| ||||||||||||||| | || Sbjct: 150886 ggcggcgcacgtgctcgtcttcccgttcccagcgcaggggcacatcaactgcatgatgca 150827 Query: 164 cttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgacc 219 |||||| | || ||||||| ||||||||| ||||| |||||||||||| |||||| Sbjct: 150826 cttcgccaccggcctcctcggcgccggcctgcacgtcaccttccttcactccgacc 150771 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Minus Query: 108 gcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccacttc 167 ||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 139731 gcgcacgtgctcgtcttcccgtggccggtgcagggccacatcaactgcatgctccacttc 139672 Query: 168 gctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 || | || |||||| || ||||||||||| |||||||| |||| |||||||| Sbjct: 139671 gccaccggcctcctccgagcaggcctccacgtcaccttcctccacagcgaccaca 139617 Score = 87.7 bits (44), Expect = 3e-14 Identities = 103/120 (85%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgt-gcccggcgcagggccacatcaactgcatgctcc 162 ||||||||||||||| || |||||| |||||| |||||||||||||||||||||| | | Sbjct: 57680 ggcggcgcacgtgctcgtcttcccggcgcccgg-gcagggccacatcaactgcatgatgc 57738 Query: 163 acttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 ||||||| | || ||| ||| |||||| || ||||| |||||||| ||||||||||||| Sbjct: 57739 acttcgccaccggcctcgtcggcgccggtcttcacgtcaccttcctccacaccgaccaca 57798 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 441 ggcttccctcccgtgacctgcgtcgtcgctgacgg 475 ||||||||||| ||||||||||||||||| ||||| Sbjct: 58014 ggcttccctccggtgacctgcgtcgtcgccgacgg 58048 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctcccgaacgacca 328 ||||||||||||||| ||||| || ||||||||||||| ||||||| Sbjct: 57846 ccgcggctccggttcatgtccatccccgacggcctccccgacgacca 57892 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 441 ggcttccctcccgtgacctgcgtcgtcgc 469 ||||||||||| ||||||||||||||||| Sbjct: 139410 ggcttccctccggtgacctgcgtcgtcgc 139382 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 444 ttccctcccgtgacctgcgtcgtcgctgacgg 475 |||||||| ||||||||||||||||| ||||| Sbjct: 150546 ttccctccggtgacctgcgtcgtcgccgacgg 150515 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctcccgaacgacca 328 ||||| ||||| ||||||||| || ||||||||||||| ||||||| Sbjct: 150720 ccgcgcctccgcttcctgtccatccccgacggcctccccgacgacca 150674
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 111 bits (56), Expect = 2e-21 Identities = 104/120 (86%) Strand = Plus / Minus Query: 106 cggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccact 165 ||||||||||||| ||||||||| ||| |||||||||||| |||||||| | ||||||| Sbjct: 13172 cggcgcacgtgctggtgttcccggccccagcgcagggccacctcaactgcttcctccact 13113 Query: 166 tcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaacc 225 |||| ||| |||||| ||||||||||||||| |||||||| |||||| ||||||||| Sbjct: 13112 tcgccacggccctcctccgcgccggcctccacgtcaccttcctccacacccaccacaacc 13053 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctccc 319 ||||||||||| ||||||||||| ||||||||||||| Sbjct: 13008 ccgcggctccgcttcctgtccgtgcccgacggcctccc 12971
>ref|XM_478152.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1449 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 108 gcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccacttc 167 ||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 10 gcgcacgtgctcgtcttcccgtggccggtgcagggccacatcaactgcatgctccacttc 69 Query: 168 gctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 || | || |||||| || ||||||||||| |||||||| |||| |||||||| Sbjct: 70 gccaccggcctcctccgagcaggcctccacgtcaccttcctccacagcgaccaca 124 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 441 ggcttccctcccgtgacctgcgtcgtcgc 469 ||||||||||| ||||||||||||||||| Sbjct: 331 ggcttccctccggtgacctgcgtcgtcgc 359
>ref|XM_450076.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1579 Score = 89.7 bits (45), Expect = 8e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 141 ggccacatcaactgcatgctccacttcgctgcggggctcctcgacgccggcctccacgtg 200 |||||||||||| |||||||||| |||| | | ||||||||||||||||||||||| Sbjct: 83 ggccacatcaaccccatgctccacctcgcctccgccctcctcgacgccggcctccacgtc 142 Query: 201 accttccttcacaccgaccacaacc 225 |||||||| |||||||||||||||| Sbjct: 143 accttcctccacaccgaccacaacc 167
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 89.7 bits (45), Expect = 8e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 141 ggccacatcaactgcatgctccacttcgctgcggggctcctcgacgccggcctccacgtg 200 |||||||||||| |||||||||| |||| | | ||||||||||||||||||||||| Sbjct: 1451986 ggccacatcaaccccatgctccacctcgcctccgccctcctcgacgccggcctccacgtc 1451927 Query: 201 accttccttcacaccgaccacaacc 225 |||||||| |||||||||||||||| Sbjct: 1451926 accttcctccacaccgaccacaacc 1451902
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1512_E04 Length = 157848 Score = 89.7 bits (45), Expect = 8e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 141 ggccacatcaactgcatgctccacttcgctgcggggctcctcgacgccggcctccacgtg 200 |||||||||||| |||||||||| |||| | | ||||||||||||||||||||||| Sbjct: 70099 ggccacatcaaccccatgctccacctcgcctccgccctcctcgacgccggcctccacgtc 70040 Query: 201 accttccttcacaccgaccacaacc 225 |||||||| |||||||||||||||| Sbjct: 70039 accttcctccacaccgaccacaacc 70015
>dbj|AK059022.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B05, full insert sequence Length = 1579 Score = 89.7 bits (45), Expect = 8e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 141 ggccacatcaactgcatgctccacttcgctgcggggctcctcgacgccggcctccacgtg 200 |||||||||||| |||||||||| |||| | | ||||||||||||||||||||||| Sbjct: 83 ggccacatcaaccccatgctccacctcgcctccgccctcctcgacgccggcctccacgtc 142 Query: 201 accttccttcacaccgaccacaacc 225 |||||||| |||||||||||||||| Sbjct: 143 accttcctccacaccgaccacaacc 167
>ref|XM_478140.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1461 Score = 87.7 bits (44), Expect = 3e-14 Identities = 103/120 (85%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgt-gcccggcgcagggccacatcaactgcatgctcc 162 ||||||||||||||| || |||||| |||||| |||||||||||||||||||||| | | Sbjct: 18 ggcggcgcacgtgctcgtcttcccggcgcccgg-gcagggccacatcaactgcatgatgc 76 Query: 163 acttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 ||||||| | || ||| ||| |||||| || ||||| |||||||| ||||||||||||| Sbjct: 77 acttcgccaccggcctcgtcggcgccggtcttcacgtcaccttcctccacaccgaccaca 136 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 441 ggcttccctcccgtgacctgcgtcgtcgctgacgg 475 ||||||||||| ||||||||||||||||| ||||| Sbjct: 352 ggcttccctccggtgacctgcgtcgtcgccgacgg 386 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctcccgaacgacca 328 ||||||||||||||| ||||| || ||||||||||||| ||||||| Sbjct: 184 ccgcggctccggttcatgtccatccccgacggcctccccgacgacca 230
>ref|XM_478130.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1461 Score = 87.7 bits (44), Expect = 3e-14 Identities = 103/120 (85%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgt-gcccggcgcagggccacatcaactgcatgctcc 162 ||||||||||||||| || |||||| |||||| |||||||||||||||||||||| | | Sbjct: 18 ggcggcgcacgtgctcgtcttcccggcgcccgg-gcagggccacatcaactgcatgatgc 76 Query: 163 acttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 ||||||| | || ||| ||| |||||| || ||||| |||||||| ||||||||||||| Sbjct: 77 acttcgccaccggcctcgtcggcgccggtcttcacgtcaccttcctccacaccgaccaca 136 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 441 ggcttccctcccgtgacctgcgtcgtcgctgacgg 475 ||||||||||| ||||||||||||||||| ||||| Sbjct: 352 ggcttccctccggtgacctgcgtcgtcgccgacgg 386 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 282 ccgcggctccggttcctgtccgtcaccgacggcctcccgaacgacca 328 ||||||||||||||| ||||| || ||||||||||||| ||||||| Sbjct: 184 ccgcggctccggttcatgtccatccccgacggcctccccgacgacca 230
>ref|XM_478159.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 79.8 bits (40), Expect = 8e-12 Identities = 100/120 (83%) Strand = Plus / Plus Query: 106 cggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccact 165 |||||||||| || ||||||||||| ||| ||||||||| ||||| |||||||||| Sbjct: 20 cggcgcacgtcctcgtgttcccgtggccgattcagggccacctcaacgtcatgctccacc 79 Query: 166 tcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccacaacc 225 |||| | || |||| || ||||||| ||||||| |||||||| ||||||||| |||||| Sbjct: 80 tcgccgtggcgctcgccggcgccggcgtccacgtcaccttcctccacaccgactacaacc 139 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 286 ggctccggttcctgtccgtcaccgacggcctcccgaacgaccatccccgc 335 ||||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct: 185 ggctccggttcatgtccgtcacggacggcctccccgacgaccacccccgc 234
>ref|XM_478153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1553 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcca 163 ||||||||||||||| || ||||||| ||| |||||||| ||||||||||||||| | || Sbjct: 83 ggcggcgcacgtgctcgtcttcccgttcccagcgcaggggcacatcaactgcatgatgca 142 Query: 164 cttcgc 169 |||||| Sbjct: 143 cttcgc 148 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 444 ttccctcccgtgacctgcgtcgtcgctgacgg 475 |||||||| ||||||||||||||||| ||||| Sbjct: 264 ttccctccggtgacctgcgtcgtcgccgacgg 295
>dbj|AK060228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G12, full insert sequence Length = 1553 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 104 ggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcca 163 ||||||||||||||| || ||||||| ||| |||||||| ||||||||||||||| | || Sbjct: 83 ggcggcgcacgtgctcgtcttcccgttcccagcgcaggggcacatcaactgcatgatgca 142 Query: 164 cttcgc 169 |||||| Sbjct: 143 cttcgc 148 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 444 ttccctcccgtgacctgcgtcgtcgctgacgg 475 |||||||| ||||||||||||||||| ||||| Sbjct: 264 ttccctccggtgacctgcgtcgtcgccgacgg 295
>ref|XM_465989.1| Oryza sativa (japonica cultivar-group), mRNA Length = 420 Score = 69.9 bits (35), Expect = 7e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| || |||||| |||| |||||||||||||||||||||| | | Sbjct: 71 tggcggcgcacgtgctcgtcttcccggcgccggggcagggccacatcaactgcatgatgc 130 Query: 163 acttcgc 169 ||||||| Sbjct: 131 acttcgc 137
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 7e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| || |||||| |||| |||||||||||||||||||||| | | Sbjct: 18923562 tggcggcgcacgtgctcgtcttcccggcgccggggcagggccacatcaactgcatgatgc 18923503 Query: 163 acttcgc 169 ||||||| Sbjct: 18923502 acttcgc 18923496 Score = 56.0 bits (28), Expect = 1e-04 Identities = 97/120 (80%) Strand = Plus / Minus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| || |||||| | || | | |||||||||||||||||| | | Sbjct: 31884315 tggcggcgcacgtgctcgtcttcccggcgctggggtaaggccacatcaactgcatgatgc 31884256 Query: 163 acttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 ||||| | | || ||| ||| ||||||||| ||||| || ||||| ||||| ||||||| Sbjct: 31884255 acttctccaccggcctcgtcggcgccggccttcacgtcactttcctccacacagaccaca 31884196
>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461D06 Length = 112895 Score = 69.9 bits (35), Expect = 7e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| || |||||| |||| |||||||||||||||||||||| | | Sbjct: 87095 tggcggcgcacgtgctcgtcttcccggcgccggggcagggccacatcaactgcatgatgc 87036 Query: 163 acttcgc 169 ||||||| Sbjct: 87035 acttcgc 87029
>ref|XM_478166.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1683 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 288 ctccggttcctgtccgtcaccgacggcctcccgaacgaccatccccgctc 337 ||||| |||||||||||| | ||||||||||| |||||||||||||||| Sbjct: 264 ctccgcttcctgtccgtcccggacggcctccccgacgaccatccccgctc 313 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 185 cgccggcctccacgtgaccttccttcacaccgaccacaacc 225 ||||||| ||||||| |||||||| |||||||||||||||| Sbjct: 170 cgccggcgtccacgtcaccttcctccacaccgaccacaacc 210
>ref|XM_506345.1| PREDICTED Oryza sativa (japonica cultivar-group), P0477A12.31 mRNA Length = 1711 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 288 ctccggttcctgtccgtcaccgacggcctcccgaacgaccatccccgctc 337 ||||| |||||||||||| | ||||||||||| |||||||||||||||| Sbjct: 295 ctccgcttcctgtccgtcccggacggcctccccgacgaccatccccgctc 344 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 185 cgccggcctccacgtgaccttccttcacaccgaccacaacc 225 ||||||| ||||||| |||||||| |||||||||||||||| Sbjct: 201 cgccggcgtccacgtcaccttcctccacaccgaccacaacc 241
>dbj|AK106006.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A06, full insert sequence Length = 1683 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 288 ctccggttcctgtccgtcaccgacggcctcccgaacgaccatccccgctc 337 ||||| |||||||||||| | ||||||||||| |||||||||||||||| Sbjct: 264 ctccgcttcctgtccgtcccggacggcctccccgacgaccatccccgctc 313 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 185 cgccggcctccacgtgaccttccttcacaccgaccacaacc 225 ||||||| ||||||| |||||||| |||||||||||||||| Sbjct: 170 cgccggcgtccacgtcaccttcctccacaccgaccacaacc 210
>dbj|AK072018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106P09, full insert sequence Length = 1706 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 288 ctccggttcctgtccgtcaccgacggcctcccgaacgaccatccccgctc 337 ||||| |||||||||||| | ||||||||||| |||||||||||||||| Sbjct: 295 ctccgcttcctgtccgtcccggacggcctccccgacgaccatccccgctc 344 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 185 cgccggcctccacgtgaccttccttcacaccgaccacaacc 225 ||||||| ||||||| |||||||| |||||||||||||||| Sbjct: 201 cgccggcgtccacgtcaccttcctccacaccgaccacaacc 241
>ref|XM_467882.1| Oryza sativa (japonica cultivar-group), mRNA Length = 876 Score = 56.0 bits (28), Expect = 1e-04 Identities = 97/120 (80%) Strand = Plus / Plus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| || |||||| | || | | |||||||||||||||||| | | Sbjct: 63 tggcggcgcacgtgctcgtcttcccggcgctggggtaaggccacatcaactgcatgatgc 122 Query: 163 acttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 ||||| | | || ||| ||| ||||||||| ||||| || ||||| ||||| ||||||| Sbjct: 123 acttctccaccggcctcgtcggcgccggccttcacgtcactttcctccacacagaccaca 182
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 56.0 bits (28), Expect = 1e-04 Identities = 97/120 (80%) Strand = Plus / Minus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| || |||||| | || | | |||||||||||||||||| | | Sbjct: 45316 tggcggcgcacgtgctcgtcttcccggcgctggggtaaggccacatcaactgcatgatgc 45257 Query: 163 acttcgctgcggggctcctcgacgccggcctccacgtgaccttccttcacaccgaccaca 222 ||||| | | || ||| ||| ||||||||| ||||| || ||||| ||||| ||||||| Sbjct: 45256 acttctccaccggcctcgtcggcgccggccttcacgtcactttcctccacacagaccaca 45197
>ref|NM_193225.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 645 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| | |||||| ||| |||||||||||||||||||||| | | Sbjct: 610 tggcggcgcacgtgctcttcttcccggcgtcggggcagggccacatcaactgcatgatgc 551 Query: 163 acttcgc 169 ||||||| Sbjct: 550 acttcgc 544
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 111 cacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccacttcgc 169 |||||||| || |||||| |||| |||||||||||||||||||||| | |||||||| Sbjct: 5062209 cacgtgctcgtcttcccggcgccggggcagggccacatcaactgcatgatgcacttcgc 5062267
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| || |||| | ||| |||||||||||||||||||||| | | Sbjct: 14425322 tggcggcgcacgtgctcgtcttcctggcgtcggggcagggccacatcaactgcatgatgc 14425381 Query: 163 acttcgc 169 ||||||| Sbjct: 14425382 acttcgc 14425388
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| | |||||| ||| |||||||||||||||||||||| | | Sbjct: 19360920 tggcggcgcacgtgctcttcttcccggcgtcggggcagggccacatcaactgcatgatgc 19360861 Query: 163 acttcgc 169 ||||||| Sbjct: 19360860 acttcgc 19360854
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1029_F04 Length = 141834 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| | |||||| ||| |||||||||||||||||||||| | | Sbjct: 88925 tggcggcgcacgtgctcttcttcccggcgtcggggcagggccacatcaactgcatgatgc 88866 Query: 163 acttcgc 169 ||||||| Sbjct: 88865 acttcgc 88859
>dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0547A06 Length = 150922 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 111 cacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccacttcgc 169 |||||||| || |||||| |||| |||||||||||||||||||||| | |||||||| Sbjct: 99766 cacgtgctcgtcttcccggcgccggggcagggccacatcaactgcatgatgcacttcgc 99824
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 103 tggcggcgcacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctcc 162 |||||||||||||||| || |||| | ||| |||||||||||||||||||||| | | Sbjct: 18496 tggcggcgcacgtgctcgtcttcctggcgtcggggcagggccacatcaactgcatgatgc 18555 Query: 163 acttcgc 169 ||||||| Sbjct: 18556 acttcgc 18562
>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0020B10 Length = 136175 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 111 cacgtgctagtgttcccgtgcccggcgcagggccacatcaactgcatgctccacttcgc 169 |||||||| || |||||| |||| |||||||||||||||||||||| | |||||||| Sbjct: 11973 cacgtgctcgtcttcccggcgccggggcagggccacatcaactgcatgatgcacttcgc 12031
>ref|XM_471860.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1479 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 124 tcccgtgcccggcgcagggccacatca 150 |||||| |||||||||||||||||||| Sbjct: 32 tcccgtacccggcgcagggccacatca 58
>ref|XM_527296.1| PREDICTED: Pan troglodytes similar to zinc finger protein 307; p373c6.1 (novel C2H2 type zinc finger protein) (LOC471918), mRNA Length = 1641 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 247 cctccgccgtcaaggcggaggct 269 ||||||||||||||||||||||| Sbjct: 115 cctccgccgtcaaggcggaggct 93
>gb|AY781778.1| Homo sapiens zinc finger protein 307 mRNA, complete cds Length = 2428 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 247 cctccgccgtcaaggcggaggct 269 ||||||||||||||||||||||| Sbjct: 401 cctccgccgtcaaggcggaggct 379
>ref|NM_019110.3| Homo sapiens zinc finger protein 307 (ZNF307), mRNA Length = 2307 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 247 cctccgccgtcaaggcggaggct 269 ||||||||||||||||||||||| Sbjct: 359 cctccgccgtcaaggcggaggct 337
>emb|AL022393.1|HSP373C6 Human DNA sequence from clone XX-P373C6 on chromosome 6p21.31-21.33 Contains the gene for a novel C2H2 type zinc finger protein, the ZNF193 gene for zinc finger protein 193, a TOB1 or 2 (transducer of ERBB2, 1 or 2) pseudogene, the 3' end of a novel gene, two zinc finger protein pseudogenes and a CpG island, complete sequence Length = 85654 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 247 cctccgccgtcaaggcggaggct 269 ||||||||||||||||||||||| Sbjct: 569 cctccgccgtcaaggcggaggct 547
>emb|AL731634.4|OSJN00276 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033P05, complete sequence Length = 120635 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 124 tcccgtgcccggcgcagggccacatca 150 |||||| |||||||||||||||||||| Sbjct: 57767 tcccgtacccggcgcagggccacatca 57741
>gb|BC014031.2| Homo sapiens zinc finger protein 307, mRNA (cDNA clone MGC:20459 IMAGE:4336904), complete cds Length = 2307 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 247 cctccgccgtcaaggcggaggct 269 ||||||||||||||||||||||| Sbjct: 359 cctccgccgtcaaggcggaggct 337
>emb|CR625010.1| full-length cDNA clone CS0DK008YF08 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 2358 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 247 cctccgccgtcaaggcggaggct 269 ||||||||||||||||||||||| Sbjct: 378 cctccgccgtcaaggcggaggct 356
>dbj|AK056698.1| Homo sapiens cDNA FLJ32136 fis, clone PEBLM2000395, moderately similar to ZINC FINGER PROTEIN 165 Length = 2180 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 247 cctccgccgtcaaggcggaggct 269 ||||||||||||||||||||||| Sbjct: 399 cctccgccgtcaaggcggaggct 377
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 124 tcccgtgcccggcgcagggccacatca 150 |||||| |||||||||||||||||||| Sbjct: 15164872 tcccgtacccggcgcagggccacatca 15164846 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Plus Query: 107 ggcgcacgtgctagtgttcccgtgcccggcgcagggcc 144 |||||||||||| |||||||| |||||||||||||| Sbjct: 26651439 ggcgcacgtgctggtgttccccgccccggcgcagggcc 26651476 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ttcccgtgcccggcgcagggccac 146 ||||||| |||||||||||||||| Sbjct: 11462722 ttcccgttcccggcgcagggccac 11462699 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ttcccgtgcccggcgcagggccac 146 ||||||| |||||||||||||||| Sbjct: 11429561 ttcccgttcccggcgcagggccac 11429538
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 126 ccgtgcccggcgcagggccacatcaactgcatgct 160 |||| |||||||||||||||| ||||| ||||||| Sbjct: 95324 ccgtacccggcgcagggccacctcaacggcatgct 95358
>ref|XM_473299.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 576 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Plus Query: 107 ggcgcacgtgctagtgttcccgtgcccggcgcagggcc 144 |||||||||||| |||||||| |||||||||||||| Sbjct: 15 ggcgcacgtgctggtgttccccgccccggcgcagggcc 52
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence Length = 121056 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Plus Query: 107 ggcgcacgtgctagtgttcccgtgcccggcgcagggcc 144 |||||||||||| |||||||| |||||||||||||| Sbjct: 90997 ggcgcacgtgctggtgttccccgccccggcgcagggcc 91034
>ref|XM_803843.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506505.50) partial mRNA Length = 2135 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 atgatgacgacgacgagggtc 389 ||||||||||||||||||||| Sbjct: 1462 atgatgacgacgacgagggtc 1482
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 426 gcggcccgcgacgatggcttc 446 ||||||||||||||||||||| Sbjct: 3733560 gcggcccgcgacgatggcttc 3733580
>ref|XM_514955.1| PREDICTED: Pan troglodytes similar to ATP-binding cassette, sub-family G, member 1 (White protein homolog) (ATP-binding cassette transporter 8) (LOC458623), mRNA Length = 764 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gcgcgcgcaggtgcgggcgg 79 |||||||||||||||||||| Sbjct: 541 gcgcgcgcaggtgcgggcgg 560
>ref|XM_471504.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1296 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ttcccgtgcccggcgcagggccac 146 ||||||| |||||||||||||||| Sbjct: 34 ttcccgttcccggcgcagggccac 57
>ref|XM_471498.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1479 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ttcccgtgcccggcgcagggccac 146 ||||||| |||||||||||||||| Sbjct: 34 ttcccgttcccggcgcagggccac 57
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 cgctcggcgggtgacatcgt 352 |||||||||||||||||||| Sbjct: 961598 cgctcggcgggtgacatcgt 961617
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 cgctcggcgggtgacatcgt 352 |||||||||||||||||||| Sbjct: 277321 cgctcggcgggtgacatcgt 277340
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 cgctcggcgggtgacatcgt 352 |||||||||||||||||||| Sbjct: 295295 cgctcggcgggtgacatcgt 295314
>gb|AE006013.1| Caulobacter crescentus CB15 section 339 of 359 of the complete genome Length = 13369 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 cgagcgcgcgcaggtgcggg 76 |||||||||||||||||||| Sbjct: 11997 cgagcgcgcgcaggtgcggg 12016
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaactgcatgctccacttc 167 |||||||||||||||||||| Sbjct: 2655677 tcaactgcatgctccacttc 2655696
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 aggccttgccgcctccgccg 255 |||||||||||||||||||| Sbjct: 15973 aggccttgccgcctccgccg 15954
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gcgcgggcgcggcccgcgac 437 |||||||||||||||||||| Sbjct: 153047 gcgcgggcgcggcccgcgac 153028
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 ccttgccgcctccgccgtcaaggcggag 266 |||||||||| |||||||||||| |||| Sbjct: 2152207 ccttgccgccgccgccgtcaaggtggag 2152180
>gb|AC015555.13|AC015555 Homo sapiens chromosome 21 clone RP11-113F1, complete sequence Length = 181511 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcgcgcgcaggtgcgggcgg 79 |||||||||||||||||||| Sbjct: 160765 gcgcgcgcaggtgcgggcgg 160746
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 tcctgtccgtcaccgacggc 314 |||||||||||||||||||| Sbjct: 5402180 tcctgtccgtcaccgacggc 5402199
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gctcctcgacgccggcctcc 195 |||||||||||||||||||| Sbjct: 2037318 gctcctcgacgccggcctcc 2037337
>dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, map 22, complete sequences Length = 148847 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gcgcgcgcaggtgcgggcgg 79 |||||||||||||||||||| Sbjct: 120224 gcgcgcgcaggtgcgggcgg 120243
>dbj|AK121700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073F21, full insert sequence Length = 2324 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 ccttgccgcctccgccgtcaaggcggag 266 |||||||||| |||||||||||| |||| Sbjct: 621 ccttgccgccgccgccgtcaaggtggag 594
>dbj|AK105759.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D05, full insert sequence Length = 2027 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 ccttgccgcctccgccgtcaaggcggag 266 |||||||||| |||||||||||| |||| Sbjct: 338 ccttgccgccgccgccgtcaaggtggag 311
>dbj|AK099145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059E20, full insert sequence Length = 1705 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ttcccgtgcccggcgcagggccac 146 ||||||| |||||||||||||||| Sbjct: 148 ttcccgttcccggcgcagggccac 171
>dbj|AK070110.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045L03, full insert sequence Length = 1719 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ttcccgtgcccggcgcagggccac 146 ||||||| |||||||||||||||| Sbjct: 116 ttcccgttcccggcgcagggccac 139
>dbj|AK059031.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C03, full insert sequence Length = 1776 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ttcccgtgcccggcgcagggccac 146 ||||||| |||||||||||||||| Sbjct: 246 ttcccgttcccggcgcagggccac 269
>dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, section 90/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gcgcgcgcaggtgcgggcgg 79 |||||||||||||||||||| Sbjct: 68664 gcgcgcgcaggtgcgggcgg 68683
>dbj|AK116617.1| Ciona intestinalis cDNA, clone:cits040m21, full insert sequence Length = 1780 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ccatgatgacgacgacgagg 386 |||||||||||||||||||| Sbjct: 700 ccatgatgacgacgacgagg 719
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 ccttgccgcctccgccgtcaaggcggag 266 |||||||||| |||||||||||| |||| Sbjct: 2159988 ccttgccgccgccgccgtcaaggtggag 2159961
>emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0056F09, complete sequence Length = 148191 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ttcccgtgcccggcgcagggccac 146 ||||||| |||||||||||||||| Sbjct: 88335 ttcccgttcccggcgcagggccac 88312 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ttcccgtgcccggcgcagggccac 146 ||||||| |||||||||||||||| Sbjct: 55174 ttcccgttcccggcgcagggccac 55151
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125593 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 ccttgccgcctccgccgtcaaggcggag 266 |||||||||| |||||||||||| |||| Sbjct: 48901 ccttgccgccgccgccgtcaaggtggag 48874
>dbj|AP001622.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1430A10, MX1-D21S171 region, complete sequence Length = 149850 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gcgcgcgcaggtgcgggcgg 79 |||||||||||||||||||| Sbjct: 93933 gcgcgcgcaggtgcgggcgg 93952
>dbj|AB038161.1| Homo sapiens ABCG1 gene for ABC transporter (ATP-binding cassette, sub-family G (WHITE), member 1), complete cds Length = 81000 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gcgcgcgcaggtgcgggcgg 79 |||||||||||||||||||| Sbjct: 16616 gcgcgcgcaggtgcgggcgg 16635 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,576,174 Number of Sequences: 3902068 Number of extensions: 2576174 Number of successful extensions: 55235 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 53629 Number of HSP's gapped (non-prelim): 1584 length of query: 490 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 468 effective length of database: 17,147,199,772 effective search space: 8024889493296 effective search space used: 8024889493296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
