Clone Information

BLAST Search Result

Clone Name	bast73e03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	FBX17_RAT (Q6AY27) F-box only protein 17	38	0.010
2	FBX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26)	38	0.013
3	FBX2_MOUSE (Q80UW2) F-box only protein 2	34	0.14
4	FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leuci...	34	0.14
5	FBX44_MOUSE (Q8BK26) F-box only protein 44 (F-box only protein 6a)	33	0.25
6	FBX6_HUMAN (Q9NRD1) F-box only protein 6 (F-box/G-domain protein 2)	33	0.25
7	FBX6_MOUSE (Q9QZN4) F-box only protein 6 (F-box only protein 6b)	33	0.32
8	FBX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)	33	0.32
9	FBX44_HUMAN (Q9H4M3) F-box only protein 44 (F-box protein FBX30)...	32	0.55
10	FBX6_RAT (Q923V4) F-box only protein 6 (F-box only protein 6b) (...	32	0.71
11	FBX27_MACFA (Q9N0C8) F-box only protein 27	31	1.2
12	IF2_PASMU (P57873) Translation initiation factor IF-2	31	1.2
13	RHLE_ECOLI (P25888) Putative ATP-dependent RNA helicase rhlE (EC...	31	1.2
14	REG1_PYRAB (Q9V2M0) Putative HTH-type transcriptional regulator ...	31	1.6
15	IF2_CORGL (Q8NP40) Translation initiation factor IF-2	30	2.1
16	YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I	30	2.1
17	IE68_SHV21 (Q01042) Immediate-early protein	30	2.1
18	FGD3_MOUSE (O88842) FYVE, RhoGEF and PH domain-containing protein 3	30	2.1
19	NEST_RAT (P21263) Nestin	30	2.7
20	FBX27_HUMAN (Q8NI29) F-box only protein 27 (F-box/G-domain prote...	30	2.7
21	IKBL_MACMU (Q5TM19) NF-kappa-B inhibitor-like protein 1 (Inhibit...	30	2.7
22	IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2	30	2.7
23	FXL12_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and leuc...	30	2.7
24	FBX27_MOUSE (Q6DIA9) F-box only protein 27	30	3.5
25	IF2_PROAC (Q6A7M5) Translation initiation factor IF-2	30	3.5
26	LRC41_MOUSE (Q8K1C9) Leucine-rich repeat-containing protein 41 (...	29	4.6
27	IKBL_PANTR (Q861W0) NF-kappa-B inhibitor-like protein 1 (Inhibit...	29	4.6
28	IKBL_HUMAN (Q9UBC1) NF-kappa-B inhibitor-like protein 1 (Inhibit...	29	4.6
29	CHLI_CHLRE (Q94FT3) Magnesium-chelatase subunit chlI, chloroplas...	29	4.6
30	FBX2_HUMAN (Q9UK22) F-box only protein 2	29	4.6
31	CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? ...	29	4.6
32	LRC27_HUMAN (Q9C0I9) Leucine-rich repeat-containing protein 27	29	4.6
33	PGCA_PIG (Q29011) Aggrecan core protein (Cartilage-specific prot...	29	6.0
34	CSP_PLACL (P08675) Circumsporozoite protein precursor (CS)	29	6.0
35	XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG pr...	29	6.0
36	IF2_CORJK (Q4JV51) Translation initiation factor IF-2	29	6.0
37	TRPA_HALVO (P18284) Tryptophan synthase alpha chain (EC 4.2.1.20)	29	6.0
38	ERYA1_SACER (Q03131) Erythronolide synthase, modules 1 and 2 (EC...	29	6.0
39	YACK_RHIME (Q9X447) Hypothetical 80.6 kDa protein in ackA 5'regi...	29	6.0
40	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	29	6.0
41	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	29	6.0
42	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	29	6.0
43	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	29	6.0
44	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	29	6.0
45	SPY1_MOUSE (Q9QXV9) Sprouty homolog 1 (Spry-1)	28	7.9
46	SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precur...	28	7.9
47	BSC1_YEAST (Q12140) Bypass of stop codon protein 1	28	7.9
48	TESK2_RAT (Q924U5) Dual specificity testis-specific protein kina...	28	7.9
49	AMPH_HUMAN (P49418) Amphiphysin	28	7.9
50	CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21	28	7.9

>FBX17_RAT (Q6AY27) F-box only protein 17|
          Length = 250

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +1

Query: 37  MRDPEAPSLVRLPEHVVLEILARVPGVADLFRCAAARKRWRDLVTEPS 180
           M + +  +L  LP  ++L++L+ VP  A + RC    + WRDLV  PS
Sbjct: 10  MTEAQHMALAELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPS 57

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>FBX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26)|
          Length = 286

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +1

Query: 34  EMRDPEAPSLVRLPEHVVLEILARVPGVADLFRCAAARKRWRDLVTEPS 180
           +M +    +L +LP  +++++L+ VP  A + RC    + WRDLV  PS
Sbjct: 9   QMTEARRLALTKLPPELLVQVLSHVPPRALVTRCRPVCRAWRDLVDGPS 57

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>FBX2_MOUSE (Q80UW2) F-box only protein 2|
          Length = 297

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = +1

Query: 4   AVAIASREEIEMRDPEAPS-------LVRLPEHVVLEILARVPGVADLFRCAAARKRWRD 162
           A A AS EE ++R+ E          L  LPE ++L +LA +P    +  C     RW++
Sbjct: 25  AGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKE 84

Query: 163 LVT-EPSFLRRRWPEG 207
           LV   P +L +   EG
Sbjct: 85  LVDGAPLWLLKCQQEG 100

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>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat|
           protein 7) (F-box protein FBL6/FBL7)
          Length = 491

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +1

Query: 7   VAIASREEIEMRDPEAPSLVRLPEHVVLEILARVPGVADLFRCAAARKRWRDLVTEPSFL 186
           + +ASR +      E  S+ RLP+H +++I + +P    L RCA   +RW +L  +P   
Sbjct: 101 IRLASRPQ-----KEQASIDRLPDHSMVQIFSFLP-TNQLCRCARVCRRWYNLAWDPRLW 154

Query: 187 R 189
           R
Sbjct: 155 R 155

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>FBX44_MOUSE (Q8BK26) F-box only protein 44 (F-box only protein 6a)|
          Length = 255

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 70  LPEHVVLEILARVPGVADLFRCAAARKRWRDLVTEPSFLRRR 195
           LPE+++LE+   +P    L RC      WRDL+   +  +R+
Sbjct: 9   LPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLWKRK 50

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>FBX6_HUMAN (Q9NRD1) F-box only protein 6 (F-box/G-domain protein 2)|
          Length = 293

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 58  SLVRLPEHVVLEILARVPGVADLFRCAAARKRWRDLVTEPSFLRRR 195
           S+  LPE+++LE+   VP    L  C      WRDL+   +  +R+
Sbjct: 12  SINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRK 57

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>FBX6_MOUSE (Q9QZN4) F-box only protein 6 (F-box only protein 6b)|
          Length = 295

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 70  LPEHVVLEILARVPGVADLFRCAAARKRWRDLVTEPSFLRRR 195
           LPE+++LE+   +P    L  C    + WRDL+   S  +R+
Sbjct: 7   LPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRK 48

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>FBX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)|
          Length = 278

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 40  RDPEAPSLV--RLPEHVVLEILARVPGVADLFRCAAARKRWRDLVTEPS 180
           R P  PSL    LP  +++++L+ VP  + + RC    + WRD+V  P+
Sbjct: 9   RLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPT 57

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>FBX44_HUMAN (Q9H4M3) F-box only protein 44 (F-box protein FBX30)|
           (F-box/G-domain protein 3)
          Length = 255

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 70  LPEHVVLEILARVPGVADLFRCAAARKRWRDLVTEPSFLRRR 195
           LPE+++LE+   VP    L  C      WRDL+   +  +R+
Sbjct: 9   LPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRK 50

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>FBX6_RAT (Q923V4) F-box only protein 6 (F-box only protein 6b)|
           (F-box/G-domain protein 2)
          Length = 284

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 70  LPEHVVLEILARVPGVADLFRCAAARKRWRDLVTEPSFLRRR 195
           LPE+++LE+   VP    L  C      WRDL+   +  +R+
Sbjct: 7   LPENILLELFTHVPAPQLLRNCRLVCSLWRDLIDVMTLWKRK 48

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>FBX27_MACFA (Q9N0C8) F-box only protein 27|
          Length = 280

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 28  EIEMRDPEAPSLVRLPEHVVLEILARVPGVADLFRCAAARKRWRDLV 168
           E E    EA  L +LP  ++L +L+ VP    L RC    + WR LV
Sbjct: 17  EPESEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALV 63

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>IF2_PASMU (P57873) Translation initiation factor IF-2|
          Length = 833

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 411 EERAAVRGER-HDAVVQEASGARDEGAKQGTTGAEDRPRRADEAGARRPFPALATLPAEE 235
           EE+A +  E+   A  +EA  A+   A       E   RRA+EA  RR    LA   AEE
Sbjct: 79  EEKARLEAEKAKQAKAEEAKKAQAVSAPTKAVDVEKEKRRAEEAELRRKADELARQKAEE 138

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>RHLE_ECOLI (P25888) Putative ATP-dependent RNA helicase rhlE (EC 3.6.1.-)|
          Length = 454

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -2

Query: 165 EVAPALARGR---AAEEVGD---AGHARQDLQHDMLRQPHQRGRFRIPHLDLLPRRD 13
           +  PA+  GR   A+ + G    AG     LQH + RQPH +GR  +  L L P R+
Sbjct: 30  QAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86

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>REG1_PYRAB (Q9V2M0) Putative HTH-type transcriptional regulator PYRAB00550|
          Length = 155

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
 Frame = +1

Query: 28  EIEMRDPEAPSLVRLPEHVVLEILARVPGVADLFRCA-----AARKRWRDLVTEPSFLR 189
           E+E+ DPEAP L +     VL+ + R+  ++D+++ +     A R  +RD+ +  SFL+
Sbjct: 71  EVELVDPEAPDLAK-----VLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFLK 124

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>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 18/139 (12%)
 Frame = -2

Query: 402 AAVRGERHDAVVQEASGARDEGAKQGTTGAEDRPRRADEAGARRPFPAL-----ATLPAE 238
           A   G R     +   G+R +G      GA+  P +  + G RRP PA+       +PA+
Sbjct: 270 AGAGGPRPQGGPRPQGGSRPQGGS--AQGAQGAPSQERQGGGRRPSPAMMPPTPGQMPAK 327

Query: 237 EADEGGXXXXX-------------XXXXXAQEGRLGDEVAPALARGRAAEEVGDAGHARQ 97
              +GG                        + GR G   A A  R   A   G     ++
Sbjct: 328 APGKGGRGGQAGGGAGGGFNRGGGTGGGAGRGGRRGG-TAGAFGRPGGAPRRGRKSKRQK 386

Query: 96  DLQHDMLRQPHQRGRFRIP 40
             +++ ++ P+  G  R+P
Sbjct: 387 RNEYESMQAPNVIGGVRLP 405

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>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I|
          Length = 1794

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -3

Query: 446  SASASASAPKRTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGP 312
            S S SAS+    R+A R +A    R ++R AALG K   +G P P
Sbjct: 1217 SESPSASSNLEDRAA-RIKAEAQRRMNERLAALGIKPRQKGTPSP 1260

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>IE68_SHV21 (Q01042) Immediate-early protein|
          Length = 407

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 33/134 (24%), Positives = 47/134 (35%), Gaps = 12/134 (8%)
 Frame = -2

Query: 423 AEAHEERAAVRGERHDAVVQEASGARDEGAKQGTTGAEDRP------------RRADEAG 280
           AEA EE A    E  +A  +EA  A +E A++    AE+                A+E  
Sbjct: 126 AEAEEEEA----EEEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEA 181

Query: 279 ARRPFPALATLPAEEADEGGXXXXXXXXXXAQEGRLGDEVAPALARGRAAEEVGDAGHAR 100
                 A     AEEA+E             +E    +E   A     A EE  +A    
Sbjct: 182 EEEAEEAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEEAEEA---EEAEEEAEEAEEEE 238

Query: 99  QDLQHDMLRQPHQR 58
           ++      R PH +
Sbjct: 239 EEAGPSTPRLPHYK 252

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>FGD3_MOUSE (O88842) FYVE, RhoGEF and PH domain-containing protein 3|
          Length = 733

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
 Frame = -2

Query: 435 LRLGAEAHEERAAVRGERHDAVVQEASGA-----RDEGAKQGTTGAEDRPRRADEAGARR 271
           L +G  AH    +      D+  +E SGA     RD G    ++         +E+    
Sbjct: 36  LPIGPGAHRGAHSSSAPAGDSSTREPSGAMKIPNRDSGIDSPSSSVASENFPCEESSEGS 95

Query: 270 PFPALATLPAEEADEGGXXXXXXXXXXAQEGRLGDEVAPALARGRAAEEV 121
           P PA+  LP+E A +             ++  +G+E  P +   R  E+V
Sbjct: 96  PSPAILGLPSETASD--SRVPQDNPQEEEDSGVGEEPDPKVTLFRPQEDV 143

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>NEST_RAT (P21263) Nestin|
          Length = 1805

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 18/120 (15%)
 Frame = -2

Query: 417  AHEERAAVRGERHDAVVQEA-SGAR--DEGAKQGTTGAEDRPRRADEA------------ 283
            A EE +   GE  DA  + A SGA+    GA  G    +D  +R D              
Sbjct: 1602 ADEEESGEEGEEEDADEEGAESGAQWWGSGASGGGCKVQDIAQRGDPVQESVGVSGLWDD 1661

Query: 282  ---GARRPFPALATLPAEEADEGGXXXXXXXXXXAQEGRLGDEVAPALARGRAAEEVGDA 112
               GA    PAL  +  + A+  G           +EG++ D +            VGDA
Sbjct: 1662 GLRGAAANVPALEMVSQDSAEPSGSEESESASLEGEEGQVTDHLDAPQEVTSMVPGVGDA 1721

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>FBX27_HUMAN (Q8NI29) F-box only protein 27 (F-box/G-domain protein 5)|
          Length = 283

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 34  EMRDPEAPSLVRLPEHVVLEILARVPGVADLFRCAAARKRWRDLV 168
           E    EA  L +LP  ++L +L+ VP    L RC    + WR LV
Sbjct: 17  EPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALV 61

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>IKBL_MACMU (Q5TM19) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa|
           B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of
           kappa light polypeptide gene enhancer in B-cells
           inhibitor-like 1)
          Length = 381

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 416 RTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDH 300
           R R+  + E    +R+ +   ALG +EP   R GPR +H
Sbjct: 247 RERARVKEEELRESRARRAQEALGDREPKPARAGPRAEH 285

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>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -3

Query: 446 SASASASAPKRTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDHGAR 291
           SA AS S+   T +AP  +AS        PA+   + P+ G P PR   GAR
Sbjct: 71  SAPASTSSSAPTPAAPARQAS--------PASAHQQAPTPGAPTPRPQGGAR 114

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>FXL12_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and leucine-rich repeat|
           protein 12) (F-box protein FBL12)
          Length = 326

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 58  SLVRLPEHVVLEILARVPGVADLFRCAAARKRWRDLVTE 174
           +LV LP+ V+LEI + +P V D  R +    RW+ LV +
Sbjct: 3   TLVELPDSVLLEIFSYLP-VRDRIRISRVCHRWKRLVDD 40

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>FBX27_MOUSE (Q6DIA9) F-box only protein 27|
          Length = 280

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 19  SREEIEMRDP---EAPSLVRLPEHVVLEILARVPGVADLFRCAAARKRWRDLV 168
           SR  +   +P   E   L RLP  ++L +L+ VP    L  C    + WR LV
Sbjct: 6   SRTRVPTPEPDPQEVLDLSRLPPELLLLVLSHVPPRTLLMHCRRVCRAWRALV 58

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>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/48 (39%), Positives = 19/48 (39%)
 Frame = -3

Query: 431 ASAPKRTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDHGART 288
           A APK    AP        R   RP       PS  RPGPR   G RT
Sbjct: 161 APAPKPKPGAPSKSPKPGARPGPRPGG-SAGLPSAARPGPRPGAGRRT 207

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>LRC41_MOUSE (Q8K1C9) Leucine-rich repeat-containing protein 41 (Protein Muf1)|
          Length = 785

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -3

Query: 446 SASASASAPKRTRSAPRCEASGTTRSSKRPAALGTKEP--------SRGRPGPRTDHGAR 291
           + S  AS  K+  SAP   ++ ++ SSKR  A    +P        + G+ GPRT  G+ 
Sbjct: 322 ATSYEASGTKQP-SAPAAASASSSTSSKRAPASSASQPKPLKRFKRAAGKKGPRTRQGSG 380

Query: 290 TKLE 279
            + E
Sbjct: 381 AESE 384

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>IKBL_PANTR (Q861W0) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa|
           B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of
           kappa light polypeptide gene enhancer in B-cells
           inhibitor-like 1)
          Length = 380

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 416 RTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDH 300
           R R+  + E    +R+ +   ALG +EP   R GPR +H
Sbjct: 246 RERARAKEEELRESRARRAQEALGDREPKPTRAGPREEH 284

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>IKBL_HUMAN (Q9UBC1) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa|
           B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of
           kappa light polypeptide gene enhancer in B-cells
           inhibitor-like 1)
          Length = 381

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 416 RTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDH 300
           R R+  + E    +R+ +   ALG +EP   R GPR +H
Sbjct: 247 RERARAKEEELRESRARRAQEALGDREPKPTRAGPREEH 285

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>CHLI_CHLRE (Q94FT3) Magnesium-chelatase subunit chlI, chloroplast precursor|
           (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase)
          Length = 417

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 325 PLLGSFVPSAAGLLDDRVVPLASHRGALLVRFGAEAEAEA 444
           P++ S V S+A +   +  P+A+ R ALLVR  A  E +A
Sbjct: 24  PVVSSKVASSARVAPFQGAPVAAQRAALLVRAAAATEVKA 63

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>FBX2_HUMAN (Q9UK22) F-box only protein 2|
          Length = 296

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = +1

Query: 16  ASREEIEMRDPE-------APSLVRLPEHVVLEILARVPGVADLFRCAAARKRWRDLVT- 171
           AS EE    D +       A  L  LPE ++L +LA +P    +  C     RW++LV  
Sbjct: 25  ASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACRLVCLRWKELVDG 84

Query: 172 EPSFLRRRWPEG 207
            P +L +   EG
Sbjct: 85  APLWLLKCQQEG 96

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>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)|
           (Zinc finger protein Cezanne 2) (OTU domain-containing
           protein 7)
          Length = 926

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = -3

Query: 434 SASAPKRTRSAPRCEASGTT-----RSSKRPAALGTKEPSRGRPGP 312
           SA   +R R A    A+ T      R ++RP A G   P R  PGP
Sbjct: 669 SAEQEQRRRDAAAAAAAATATATVKRPARRPEAEGAPGPERASPGP 714

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>LRC27_HUMAN (Q9C0I9) Leucine-rich repeat-containing protein 27|
          Length = 530

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 307 VLGPGRPLLGSFVPSAAGLLDDRVVPL 387
           +L P R ++ S +PSA  L+D+R VPL
Sbjct: 383 LLPPRRSMVASKIPSATDLIDNRKVPL 409

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>PGCA_PIG (Q29011) Aggrecan core protein (Cartilage-specific proteoglycan|
           core protein) (CSPCP) (Fragments)
          Length = 537

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 378 DAVVQEASGARDEGAKQGTTGAEDRPRRADEAGARRPFPALATLPAEE 235
           D VVQ  S A +EG  +G +  E      +   + +PFP+    P+EE
Sbjct: 447 DLVVQVTSAATEEGT-EGPSATEAPSTSEEPFPSEKPFPSEEPFPSEE 493

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>CSP_PLACL (P08675) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
 Frame = -2

Query: 426 GAEAHEERAAVRGERHDAVVQEASGARDEGAKQGTTG--AEDRPRRADEAGARRPFPALA 253
           GA A +   A  G R     + A GAR E   +   G  AED  R AD  GAR    A A
Sbjct: 118 GARAEDGARAADGARAADGARAADGARAEDGARAEDGARAEDGARAAD--GARAADGARA 175

Query: 252 TLPAEEAD--EGGXXXXXXXXXXAQEGRLGDEVAPALARGRAAEEVGDAG 109
              A  AD               A +G   ++ APA  R     E G AG
Sbjct: 176 ADGARAADGARAADGARAADGARAADGARAEDGAPAGNR-----EGGQAG 220

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>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)|
          Length = 439

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 30/107 (28%), Positives = 33/107 (30%)
 Frame = -2

Query: 423 AEAHEERAAVRGERHDAVVQEASGARDEGAKQGTTGAEDRPRRADEAGARRPFPALATLP 244
           AE      A  G    A  +  + A  EG       AE       + GA  P PA    P
Sbjct: 32  AEGVAPAPAEGGAPAPAPAEGEAPAPAEGGAPAPAPAEGAEPAPADGGAPAPAPAEGGAP 91

Query: 243 AEEADEGGXXXXXXXXXXAQEGRLGDEVAPALARGRAAEEVGDAGHA 103
           A    EGG          A     G   APA A G A       G A
Sbjct: 92  APAPAEGGAPAPAPAEGGAPAPAEGGAPAPAPAEGEAPAPAPAEGEA 138

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>IF2_CORJK (Q4JV51) Translation initiation factor IF-2|
          Length = 922

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = -2

Query: 426 GAEAHEERAAVRGERHDAVVQEASGARDEGAKQGTTGAEDRPRRADEAGARRPFPAL--- 256
           GA A       RG +         G+R  GAK+    A  +P  A + G RRP PA+   
Sbjct: 179 GAPAERPAPRPRGGQAGPGDMPRPGSRPGGAKK----AGPKPGGAKQGGGRRPSPAMMPS 234

Query: 255 ----ATLPAEEADEGG 220
               A +P++  + GG
Sbjct: 235 HPNPAQMPSKSDNFGG 250

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>TRPA_HALVO (P18284) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 277

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
 Frame = -2

Query: 393 RGERHDAVVQEASGARDEGAKQGTTGAEDRPRRADEAGARR----PFPALATLPAEEADE 226
           RGER D ++++ SG     A+ GTTGA+       ++   R      P        + D 
Sbjct: 154 RGERLDRIMEQVSGYVYVQARLGTTGAQSSVSDQTDSSLERLTDYDVPKAVGFGISDGDH 213

Query: 225 GGXXXXXXXXXXAQEGRLGDEVAPALARGRAAEEVGD 115
                            L D VA     G  AE V D
Sbjct: 214 AERIVASGADGIIVGSALVDIVAEGHENGDDAETVAD 250

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>ERYA1_SACER (Q03131) Erythronolide synthase, modules 1 and 2 (EC 2.3.1.94) (ORF|
            1) (6-deoxyerythronolide B synthase I) (DEBS 1)
          Length = 3491

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 318  GAEDRPR-RADEAGARRPFPALATLPAEEADEGGXXXXXXXXXXAQEGRLGDEVAPALAR 142
            G+ED+   RAD   ARR  PA  T  +E A  GG               LG EVA  LA 
Sbjct: 3024 GSEDQVAVRADAVRARRLSPAHVTATSEYAVPGGTILVTGGTAG-----LGAEVARWLA- 3077

Query: 141  GRAAEEV 121
            GR AE +
Sbjct: 3078 GRGAEHL 3084

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>YACK_RHIME (Q9X447) Hypothetical 80.6 kDa protein in ackA 5'region (ORFA)|
          Length = 733

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 289 VRAPWSVLGPGRPLLGSFVPSAAGLLDDRVVPLA 390
           +R  + V GPG P++ ++V +AAGL+ D   P+A
Sbjct: 488 LRLQYEVFGPGNPVM-AWVEAAAGLIRDARQPVA 520

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -3

Query: 446 SASASASAPKRTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDHGARTK 285
           +++ S+S    + ++ R  +S T+RSS   ++ G+  PSR R   R    +++K
Sbjct: 89  TSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSK 142



 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 107 TRARISSTTCSGSLTSEGAS--GSLISISSRDAMAT 6
           TR+R SST+ SGS TS G+S   S  S SSR   ++
Sbjct: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSS 110

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -3

Query: 446 SASASASAPKRTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDHGARTK 285
           +++ S+S    + ++ R  +S T+RSS   ++ G+  PSR R   R    +++K
Sbjct: 89  TSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSK 142



 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 107 TRARISSTTCSGSLTSEGAS--GSLISISSRDAMAT 6
           TR+R SST+ SGS TS G+S   S  S SSR   ++
Sbjct: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSS 110

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -3

Query: 446 SASASASAPKRTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDHGARTK 285
           +++ S+S    + ++ R  +S T+RSS   ++ G+  PSR R   R    +++K
Sbjct: 89  TSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSK 142



 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 107 TRARISSTTCSGSLTSEGAS--GSLISISSRDAMAT 6
           TR+R SST+ SGS TS G+S   S  S SSR   ++
Sbjct: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSS 110

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -3

Query: 446 SASASASAPKRTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDHGARTK 285
           +++ S+S    + ++ R  +S T+RSS   ++ G+  PSR R   R    +++K
Sbjct: 89  TSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSK 142



 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 107 TRARISSTTCSGSLTSEGAS--GSLISISSRDAMAT 6
           TR+R SST+ SGS TS G+S   S  S SSR   ++
Sbjct: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSS 110

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -3

Query: 446 SASASASAPKRTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDHGARTK 285
           +++ S+S    + ++ R  +S T+RSS   ++ G+  PSR R   R    +++K
Sbjct: 89  TSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSK 142



 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 107 TRARISSTTCSGSLTSEGAS--GSLISISSRDAMAT 6
           TR+R SST+ SGS TS G+S   S  S SSR   ++
Sbjct: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSS 110

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>SPY1_MOUSE (Q9QXV9) Sprouty homolog 1 (Spry-1)|
          Length = 313

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 440 SASASAPKRTRSAPRCEASGTTRS-SKRPAALGTKEPSRGRPGPRTDHGARTK 285
           +A  S   R+ S     +SG++ S S     LG   P+R  PG R+D   RT+
Sbjct: 99  NARGSVLSRSTSTGSAASSGSSSSVSSEQGLLGRSPPTRPIPGHRSDRVIRTQ 151

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>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC|
           3.2.1.-) (Soluble cell wall protein 11)
          Length = 542

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/66 (24%), Positives = 25/66 (37%)
 Frame = -3

Query: 221 EQWHAPSGQRRRRKDGSVTXXXXXXXXXXXXXXXATPGTRARISSTTCSGSLTSEGASGS 42
           E  + P+         S T                +  T +  SST  + + TSEG+S S
Sbjct: 214 ESTNTPTSSSTSSSTSSSTSSSTSSSTSSSTSSSTSSSTSSSTSSTQETAATTSEGSSSS 273

Query: 41  LISISS 24
             +I+S
Sbjct: 274 SAAITS 279

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>BSC1_YEAST (Q12140) Bypass of stop codon protein 1|
          Length = 328

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = -3

Query: 197 QRRRRKDGSVTXXXXXXXXXXXXXXXATPGTRARISSTTCSGSLTSEGASGSLISISSRD 18
           Q +   DG+ T               +T  +    SSTT S S TS   + S  + SS  
Sbjct: 148 QCKGNNDGTCTKASSSSITTSSITTSSTTTSSTTTSSTTTSSSTTSSSTTSSSTTSSSTT 207

Query: 17  AMAT 6
           + +T
Sbjct: 208 SSST 211

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>TESK2_RAT (Q924U5) Dual specificity testis-specific protein kinase 2 (EC|
           2.7.12.1) (Testicular protein kinase 2)
          Length = 570

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +1

Query: 82  VVLEILARVPGVADLFRC----AAARKRWRDLVTEPSFLRRRWPEGAC 213
           +V ++ A  PG   L  C    A + +RWR L   P FL +  P   C
Sbjct: 426 LVFDLDAPGPGTVSLADCQEPLAPSSRRWRSLPGSPEFLHQACPFVGC 473

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>AMPH_HUMAN (P49418) Amphiphysin|
          Length = 695

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 420 EAHEERAAVRGER--HDAVVQEASGARDEGAKQGTTGAEDRPRRADEA--GARRPFPALA 253
           EA E  A V  E+     V++ AS   +EG  + T GAE +    D A  G     P LA
Sbjct: 526 EAEELEATVPQEKVIPSVVIEPASNHEEEGENEITIGAEPKETTEDAAPPGPTSETPELA 585

Query: 252 T 250
           T
Sbjct: 586 T 586

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>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 446 SASASASAPKRTRSAPRCEASGTTRSSKRPAALGTKEPSRGRPGPRTDHG 297
           S S+ + +P R+RS  RC +S +   + RP    +   +   P PR   G
Sbjct: 298 SRSSRSRSPSRSRSPSRCASSRSRSPAHRPRRHSSSRVNPPGPPPRRPAG 347


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,365,979
Number of Sequences: 219361
Number of extensions: 689586
Number of successful extensions: 3423
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 3202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3409
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result