ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast73d12 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_RHIME (Q92SW4) Translation initiation factor IF-2| Length = 889 Score = 33.1 bits (74), Expect = 0.19 Identities = 20/64 (31%), Positives = 29/64 (45%) Frame = -2 Query: 195 MVSGRTRCDAAEGTTVSGSANLQPQVSRCINASTPRARPDDRSPGPRS*KNQPSLQRQPP 16 M GRT+ E G + + A+TP ARP ++ P P +P+ Q QP Sbjct: 34 MGRGRTKAVVVETKRTRGPLKHKDERPITPVAATPAARPAEQRPMPPQPSGRPAPQPQPH 93 Query: 15 NPRR 4 PR+ Sbjct: 94 QPRQ 97
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 32.3 bits (72), Expect = 0.32 Identities = 18/38 (47%), Positives = 21/38 (55%) Frame = -2 Query: 114 RCINASTPRARPDDRSPGPRS*KNQPSLQRQPPNPRRR 1 R +S+PRAR SP PR P L+ QPP PR R Sbjct: 111 RVDRSSSPRAR----SPPPRRHSRSPPLRGQPPPPRHR 144
>FA12_HUMAN (P00748) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman| factor) (HAF) [Contains: Coagulation factor XIIa heavy chain; Beta-factor XIIa part 1; Beta-factor XIIa part 2; Coagulation factor XIIa light chain] Length = 615 Score = 31.2 bits (69), Expect = 0.72 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = -3 Query: 101 RAPPARAQTTGAPAHAHRKISQAFSGNPRTHGG 3 +A AR Q G AH R SQA NP HGG Sbjct: 155 QAAVARCQCKGPDAHCQRLASQACRTNPCLHGG 187
>NORM_PSEAE (Q9HTR0) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 488 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +1 Query: 10 WVRGLPLKAWLIFL*AWAGAPVVWARAGG 96 W+ G+PL L F W A V W AGG Sbjct: 401 WLVGVPLACLLAFAAGWGAAGVWWGLAGG 429
>ERBB3_MOUSE (Q61526) Receptor tyrosine-protein kinase erbB-3 precursor (EC| 2.7.10.1) (c-erbB3) (Glial growth factor receptor) Length = 1339 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -2 Query: 186 GRTRCDAAEGTTVSGSANLQPQVSRCINASTPRARPDDRSPGPR 55 GR +++EG A LQ +VS C R+R RSP PR Sbjct: 1087 GRQTSESSEGHVTGSEAELQERVSMC------RSRSRSRSPRPR 1124
>RIMS1_HUMAN (Q86UR5) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1692 Score = 30.0 bits (66), Expect = 1.6 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -2 Query: 138 ANLQPQVSRCINASTPRARPDD--RSPGPRS*KNQPSL-QRQPPNPR 7 + LQP + R +AST RPD SP + PSL +R+PP+PR Sbjct: 1103 SELQPFLDRARSASTNCLRPDTSLHSPERERGRWSPSLDRRRPPSPR 1149
>SUM2_SCHPO (Q9HGL3) Protein sum2| Length = 426 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/52 (28%), Positives = 22/52 (42%) Frame = -2 Query: 171 DAAEGTTVSGSANLQPQVSRCINASTPRARPDDRSPGPRS*KNQPSLQRQPP 16 + ++G N++P N P P +PGP + PSLQ PP Sbjct: 186 NVSQGFAGQAPYNVRPGYGMPSNQKPPNFAPGMPAPGPTAVSASPSLQSMPP 237
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = -2 Query: 165 AEGTTVSGSANLQPQVSRCINASTPRARP---DDRSPGPRS*KNQPSLQRQPPNPR 7 + G +VS S + SR A + R P RSPGPRS PS +R R Sbjct: 217 SRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSR 272
>BRNQ_ECOLI (P0AD99) Branched-chain amino acid transport system II carrier| protein (LIV-II) Length = 439 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Frame = +1 Query: 4 PPWVRGLPLK----AWLIFL*AWAGAPVVWARAGGARVNASA 117 P W + LPL AWL+ ++W RA G +V +SA Sbjct: 397 PSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSA 438
>BRNQ_ECO57 (P0ADA0) Branched-chain amino acid transport system II carrier| protein (LIV-II) Length = 439 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Frame = +1 Query: 4 PPWVRGLPLK----AWLIFL*AWAGAPVVWARAGGARVNASA 117 P W + LPL AWL+ ++W RA G +V +SA Sbjct: 397 PSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSA 438
>Y3974_YERPE (Q8ZA46) UPF0341 protein YPO3974/y3856/YP3336| Length = 256 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 97 ARVNASADLRLQVRRPRHGRPLRGVASRAA 186 A A A R+ V+RP + PL GVA++AA Sbjct: 208 APARALATKRVVVKRPDYAEPLAGVAAQAA 237
>Y3815_YERPS (Q664F4) UPF0341 protein YPTB3815| Length = 256 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 97 ARVNASADLRLQVRRPRHGRPLRGVASRAA 186 A A A R+ V+RP + PL GVA++AA Sbjct: 208 APARALATKRVVVKRPDYAEPLAGVAAQAA 237
>ERBB3_HUMAN (P21860) Receptor tyrosine-protein kinase erbB-3 precursor (EC| 2.7.10.1) (c-erbB3) (Tyrosine kinase-type cell surface receptor HER3) Length = 1342 Score = 28.1 bits (61), Expect = 6.1 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -2 Query: 195 MVSGRTRCDAAEGTTVSGSANLQPQVSRCINASTPRARPDDRSPGPR 55 M G +++EG A LQ +VS C R+R RSP PR Sbjct: 1087 MPRGCLASESSEGHVTGSEAELQEKVSMC------RSRSRSRSPRPR 1127
>ERBB3_PONPY (Q5RB22) Receptor tyrosine-protein kinase erbB-3 precursor (EC| 2.7.10.1) Length = 1342 Score = 27.7 bits (60), Expect = 8.0 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -2 Query: 195 MVSGRTRCDAAEGTTVSGSANLQPQVSRCINASTPRARPDDRSPGPR 55 M G +++EG A LQ +VS C R+R RSP PR Sbjct: 1087 MPRGCLASESSEGHVTHSEAELQEKVSMC------RSRSRSRSPRPR 1127 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,103,896 Number of Sequences: 219361 Number of extensions: 421490 Number of successful extensions: 1540 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1536 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
