>CFAH_MOUSE (P06909) Complement factor H precursor (Protein beta-1-H)|
          Length = 1234

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 199 GSCWRSRRFCGERVCAPPHSLVGTDTEH 116
           GS W S+ FC E+ C+PP+ L G  T H
Sbjct: 253 GSGWSSQPFCEEKRCSPPYILNGIYTPH 280

>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)|
          Length = 3124

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 44   KGTKSG*GRGRIPGRDFTP--PPPPAVLSVRAYEGVRGRANPLAAKSP*TPAGA 199
            +G K   G+  +PGR  TP  P PP  +      G  G+  P   + P  PAGA
Sbjct: 2812 QGMKGDAGQPGLPGRSGTPGLPGPPGPVGPPGERGFTGKDGPTGPRGPPGPAGA 2865

>NFIX_MOUSE (P70257) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)|
           (NFI-X) (NF-I/X) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 488

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +2

Query: 47  GTKSG*GRGRIPGRDFTPPPPPAVLSVRAYEGVRGRANPLAAKSP*TPAGASVGSNLPTC 226
           G  +G G+G++PG    PPPPP             R  PL      T + A  G+ L   
Sbjct: 417 GQPNGSGQGKVPGSFLLPPPPPV-----------ARPVPLPMPDSKTTSTAPDGAALTPP 465

Query: 227 SPS 235
           SPS
Sbjct: 466 SPS 468

>NFIX_HUMAN (Q14938) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)|
           (NFI-X) (NF-I/X) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 502

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +2

Query: 47  GTKSG*GRGRIPGRDFTPPPPPAVLSV---RAYEGVRGRANPLAAKSP*TPAGASVGSNL 217
           G  +G G+G++PG    PPPPP    V            A   AA +P +P+ A+ G+  
Sbjct: 417 GQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKSTSTAPDGAALTPPSPSFATTGA-- 474

Query: 218 PTCSPSDLSRDPRIGDLL 271
            + +   +S  PR G+ L
Sbjct: 475 -SSANRFVSIGPRDGNFL 491

>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 94  HSAAAPGGAQCPCLRGSEGARKPSRRK 174
           HSAAA G A  P   GSE A  PS+RK
Sbjct: 672 HSAAAAGRAPSPPPPGSEAAPSPSKRK 698

>AB1IP_HUMAN (Q7Z5R6) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
           (Rap1-GTP-interacting adapter molecule) (RIAM)
           (Proline-rich EVH1 ligand 1) (PREL-1) (Proline-rich
           protein 73) (Retinoic ac
          Length = 666

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 80  PGRDFTPPPPPAVLSVRAYEGVRGRANPLAAKSP*TPAGASV 205
           P  DF PPPPP      +Y G+ G   P     P  PA A V
Sbjct: 578 PPPDFVPPPPP------SYAGIAGSELPPPPPPPPAPAPAPV 613

>STU1_YEAST (P38198) Mitotic spindle protein STU1|
          Length = 1513

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 331 EMIRLQTYAAFSLLATVTSVYYAFSSREQFYPAMVYLSTSKICFVLLLTRASSPV 495
           E++   +  A+       S +YA+ S    YP +++LS S +C+++      SPV
Sbjct: 52  ELVNESSIQAYFAALLFISGHYAYRS----YPRLIFLSHSSLCYLIKRVAMQSPV 102

>MBHL_BRAJA (P12636) Uptake hydrogenase large subunit (EC 1.12.99.6)|
           (Hydrogenlyase) (Membrane-bound hydrogenase large
           subunit)
          Length = 596

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +2

Query: 122 SVRAYEGVRGRANPLAAKSP*TPAGASVGSNLPTCSPSDLSRDPRIGDLLV 274
           SV AY  V   AN  +AKS   P GA +  NL    P D +    I + +V
Sbjct: 298 SVLAYGDVPEHANDYSAKSLKLPRGAIINGNLSEVFPVDHANPDEIQEFVV 348

>GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein)|
          Length = 647

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 68  RGRIPGRDFTPPPPPAVLSVRAYEGVRGRANPLAAKSP*TPAGASVGSNLP--TCSPSDL 241
           RG +P     PPPPP++    A       ++P  A +P  PA ++  ++L      P   
Sbjct: 175 RGNLPVAGTPPPPPPSLDLQPA-----AASSPYVAPAPSAPAASAAAADLGWFAGGPGPG 229

Query: 242 SRDPRI 259
           S DPR+
Sbjct: 230 SLDPRL 235

>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
 Frame = +2

Query: 44   KGTKSG*GRGRIPGRDFTP-----------PPPPAVLSVRAYEGVRGRANPLAAKSP*TP 190
            +GTK   G   +PG+D  P           P P   L ++  EG  G   P  +     P
Sbjct: 1037 EGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEGPPGPPGPAGSPGERGP 1096

Query: 191  AGASVGSNLP 220
            AGA+    +P
Sbjct: 1097 AGAAGPIGIP 1106

>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
 Frame = +2

Query: 44   KGTKSG*GRGRIPGRDFTP-----------PPPPAVLSVRAYEGVRGRANPLAAKSP*TP 190
            +GTK   G   +PG+D  P           P P   L ++  EG  G   P  +     P
Sbjct: 1037 EGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEGPPGPPGPAGSPGERGP 1096

Query: 191  AGASVGSNLP 220
            AGA+    +P
Sbjct: 1097 AGAAGPIGIP 1106

>DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrolase,|
           mitochondrial precursor (EC 3.6.1.23) (dUTPase) (dUTP
           pyrophosphatase)
          Length = 252

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
 Frame = +2

Query: 5   YLPS*SFSQSTNHKGTKSG*GRGRIPGRDFTPPPP-------PAVLSVRAYEGVRGRANP 163
           +L S   S   N +GT  G  RG +  R    PP        P   + R  +G RG +  
Sbjct: 14  FLTSLLRSAMQNARGTAEGRSRGTLRARPAPRPPAAQHGIPRPLSSAGRLSQGCRGASTV 73

Query: 164 LAA--KSP*TPAGAS--VGSNLPTCSPSDLSRDPRIGDL 268
            AA  K     AG S   G   P  SPS  +R   +G +
Sbjct: 74  GAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGM 112

>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
 Frame = +2

Query: 44   KGTKSG*GRGRIPGRDFTP-----------PPPPAVLSVRAYEGVRGRANPLAAKSP*TP 190
            +GTK   G   +PG+D  P           P P   L ++  EG  G   P  +     P
Sbjct: 1035 EGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGP 1094

Query: 191  AGASVGSNLP 220
            AGA+    +P
Sbjct: 1095 AGAAGPIGIP 1104

>AB1IP_BRARE (Q6PFT9) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
          Length = 646

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 89  DFTPPPPPAVLSVRAYEGVRGRANPLAAKSP*TPAGASVGSNLPTCSP 232
           DF PPPPP+ +S           +P+A+  P  PA  S G   P   P
Sbjct: 543 DFLPPPPPSFVSHGGESLPPPPPDPVASLPPPPPAFTSAGGAPPPPPP 590

>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 27.3 bits (59), Expect(2) = 4.5
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 98   PPPPPAVLSVRAYEGV-RGRANPLAAKSP*TPAGASVGSNLPTCSPSDLSRDP 253
            PPPP A   V+A  G+  G A P  A SP     A++    P  +P  L   P
Sbjct: 1275 PPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAK--PPGTPPSLGASP 1325



 Score = 20.8 bits (42), Expect(2) = 4.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 9    SPPRVSPNPP 38
            +PP VSP PP
Sbjct: 1266 TPPPVSPKPP 1275

>ATG1_PICAN (Q8TFN2) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)|
           (Autophagy-related protein 1) (Peroxisome degradation
           deficient protein 7)
          Length = 804

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
 Frame = +1

Query: 73  PHPGTRFHSAAAPGGAQCPCLRGSEGARKPSRRKIAVNASRSLRWIKSSDVFPVRSLPGS 252
           PH GT  HSAA P G   P    ++    PS R  ++ ++R   W       P+   P +
Sbjct: 457 PHLGTNEHSAANPSG---PTETQTQRRFSPSSRTSSIGSNRRPSW--GDRKMPISISPTN 511

Query: 253 SYR*SIGCVPLGLWRNSRGDSPRAAAEMIRLQ-TYAAFSLLATVT 384
           +   ++G     L+   +    +A    I    T    +LLAT T
Sbjct: 512 ALTKALGYTSNRLFGQQQQQPQQAQQAAIESAITNVTTNLLATKT 556

>CD99_MOUSE (Q8VCN6) CD99 antigen precursor (Paired immunoglobin-like type 2|
           receptor-ligand) (PILR-L)
          Length = 175

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 111 GGGGGVKSRPGMRPRPYP 58
           GGGGG   +PG RP+P P
Sbjct: 67  GGGGGAGEKPGNRPQPDP 84

>HAP1_HUMAN (P54257) Huntingtin-associated protein 1 (HAP-1) (Neuroan 1)|
          Length = 671

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 37  QSQGYEIRIGARPHPGTRFHSAAAPGGAQCPCLRGSEGARKPS 165
           Q++G   R+G+R   GT+F S A  G           GAR+PS
Sbjct: 42  QARGTGQRVGSRATSGTQFLSEARTGARPASEAGAKAGARRPS 84

>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
           (Ataxin-2-related protein)
          Length = 1075

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 44  KGTKSG*GRGRIPGRDFTPPPPPAVLSVRAYEGVRGRAN-PLAAKSP*TPAGASVGSNLP 220
           +G K+       P  + + PPPPAV  +      +  A  P++A  P  P G++V ++  
Sbjct: 417 RGAKTLSSPSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSA 476

Query: 221 TCSPSDLSRDPRIGDL 268
           +   +    DP +G +
Sbjct: 477 SIPVTSSVSDPGVGSI 492

>AB1IP_MOUSE (Q8R5A3) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
           (Proline-rich EVH1 ligand 1) (PREL-1) (Proline-rich
           protein 48)
          Length = 670

 Score = 25.0 bits (53), Expect(2) = 6.2
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 98  PPPPPAVLSVRAYEGVRGRANPLAAKSP*TPAGASVGSNLP 220
           PPPPP  LS         +++PL  K P  P        LP
Sbjct: 609 PPPPPPCLSQEI-----TKSSPLPPKKPLVPPKRQENQGLP 644



 Score = 22.7 bits (47), Expect(2) = 6.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 89  DFTPPPPP 112
           DF PPPPP
Sbjct: 590 DFVPPPPP 597

>API3_ASCSU (P19400) Major pepsin inhibitor 3 precursor (PI-3)|
          Length = 169

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 20  SFSQSTNHKGTKSG*GRGRIPGRDFTPPPPPAVLSVR 130
           +F +   ++   SG   G +P    +PPPPP+  +V+
Sbjct: 133 AFEEQQENQPPSSGMPHGAVPAGGLSPPPPPSFCTVQ 169

>P53_CHICK (P10360) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 367

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   AISPPRVSPNPPITRVRNPD 62
           A+SPP  +P PP  RV NPD
Sbjct: 288 AMSPPTEAPEPPKKRVLNPD 307

>PDCD7_MOUSE (Q9WTY1) Programmed cell death protein 7 (ES18)|
          Length = 482

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
 Frame = +2

Query: 80  PGRDFTP-----PPPPAVLSVRAYEGVRGR----------ANPLAAKSP*TPAGASVG 208
           PG  ++P     PPPP VL   A + +R R            P   ++P TPAG S+G
Sbjct: 114 PGPPWSPRWAEAPPPPDVLGDAALQRLRDRQWLEAVFGNPRRPGGLRTPRTPAGPSLG 171

>DOCK5_HUMAN (Q9H7D0) Dedicator of cytokinesis protein 5 (Fragment)|
          Length = 804

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +2

Query: 95  TPPPPPAVLSVRAYEGVRGRANPLA--------AKSP*TPAGASVGSNLPTCSP 232
           TP PPP     + YEG +  +  LA        AK+P  P   +  S +PT  P
Sbjct: 748 TPVPPPPPPKSKPYEGSQRNSTELAPPLPVRREAKAPPPPPPKARKSGIPTSEP 801

>AMPA_WOLPM (Q73IU2) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 500

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 333 DDPVADVRRVQPAGDGNVGVLCVQ 404
           D P+ADV+ + PAG G   ++  Q
Sbjct: 424 DSPIADVQNIAPAGSGGDSIMAAQ 447

>RPE_MYCTU (P65760) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)|
           (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E)
          Length = 229

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 216 RFDPTEAPAGVHG-DFAARGFARPLTPS*ARTLSTAGGGGGVKSRPGMRPRPYPDFVP 46
           R+ P  A AG +   F A     P+    AR +  AG   G+  +PG    PY D +P
Sbjct: 77  RWAPPYAEAGAYNVTFHAEATDNPVGV--ARDIRAAGAKAGISVKPGTPLEPYLDILP 132

>RPE_MYCBO (P65761) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)|
           (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E)
          Length = 229

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 216 RFDPTEAPAGVHG-DFAARGFARPLTPS*ARTLSTAGGGGGVKSRPGMRPRPYPDFVP 46
           R+ P  A AG +   F A     P+    AR +  AG   G+  +PG    PY D +P
Sbjct: 77  RWAPPYAEAGAYNVTFHAEATDNPVGV--ARDIRAAGAKAGISVKPGTPLEPYLDILP 132

>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
 Frame = +2

Query: 44   KGTKSG*GRGRIPGRDFTP-----------PPPPAVLSVRAYEGVRGRANPLAAKSP*TP 190
            +GTK   G   +PG+D  P           P P   L ++  EG  G   P  +     P
Sbjct: 1035 EGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEGPPGPPGPAGSPGERGP 1094

Query: 191  AGASVGSNLP 220
            AG++    +P
Sbjct: 1095 AGSAGPIGIP 1104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,736,173
Number of Sequences: 219361
Number of extensions: 1670368
Number of successful extensions: 6830
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 5939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6792
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)